mRNA_H-elongata_contig118994.1470.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig118994.1470.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 132 bits (333), Expect = 1.590e-34 Identity = 72/169 (42.60%), Postives = 106/169 (62.72%), Query Frame = 1
Query: 31 EVEEMRQIPYREIVGALMRAATMTRPEVSFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRNLGITYRGEPGGGTKLSAWVDADYGTCTCLDTRRSGSGGTVMMAGGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKEFMIPPIDV-AIKRHEDNEGAIKM 534
E E +P+RE+VG+LM AT TRP+++ A +A++ +P HW+AA L Y+ RT +GIT+ G + +VDADY + RRS SGG VM GG ++WFSR QK +++E+EYVA+A+++ E+ FLRQV FM+P + I EDN+GAI++
Sbjct: 91 ENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADY--ASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQI 257
BLAST of mRNA_H-elongata_contig118994.1470.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 133 bits (334), Expect = 3.360e-34 Identity = 72/169 (42.60%), Postives = 106/169 (62.72%), Query Frame = 1
Query: 31 EVEEMRQIPYREIVGALMRAATMTRPEVSFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRNLGITYRGEPGGGTKLSAWVDADYGTCTCLDTRRSGSGGTVMMAGGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKEFMIPPIDV-AIKRHEDNEGAIKM 534
E E +P+RE+VG+LM AT TRP+++ A +A++ +P HW+AA L Y+ RT +GIT+ G + +VDADY + RRS SGG VM GG ++WFSR QK +++E+EYVA+A+++ E+ FLRQV FM+P + I EDN+GAI++
Sbjct: 146 ENEASADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADY--ASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQI 312
BLAST of mRNA_H-elongata_contig118994.1470.1 vs. uniprot
Match: UPI001E1BB9B0 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BB9B0) HSP 1 Score: 128 bits (321), Expect = 3.660e-34 Identity = 75/176 (42.61%), Postives = 110/176 (62.50%), Query Frame = 1
Query: 13 SSQTDAEVEEMRQIPYREIVGALMRAATMTRPEVSFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRNLGITYRGEPGGGTK-LSAWVDADYGTCTCLDTRRSGSGGTVMMAGGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQ-VKEFMIPPIDVAIKRHEDNEGAIKM 534
S QTD EVEEM+QIPY+E VGAL+ +T TRP++S+A Q+AKFN+NPG HW+A ++ +YL TR GI + P G + + + DAD+ D + S SG + GG+ SWFSR Q T+ +++E+E+VA E E ++R +KE ++ AI DN+GAI++
Sbjct: 2 SPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGIFFSPNPSGKEEEIVGFTDADHAGDP--DDQTSTSGCVFICHGGSFSWFSRKQGCTSLSTTEAEFVAGGEAAKEATWIRAFLKEIGKRNLE-AIPLFCDNQGAIRV 174
BLAST of mRNA_H-elongata_contig118994.1470.1 vs. uniprot
Match: A0A6H5K2P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2P8_9PHAE) HSP 1 Score: 131 bits (330), Expect = 5.120e-34 Identity = 73/172 (42.44%), Postives = 109/172 (63.37%), Query Frame = 1
Query: 22 TDAEVEEMR-QIPYREIVGALMRAATMTRPEVSFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRNLGITYRGEPGGGTKLSAWVDADYGTCTCLDTRRSGSGGTVMMAGGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKEFMIPPIDV-AIKRHEDNEGAIK 531
+D +V E +P+RE+VG+LM AT TRP+++ AA +A++ +P HW+AA L Y+ RT +GIT+ G G + +VDADY + RRS SGG VM G ++WFSR QK +++E+EYVA+A+++ E+ FLRQV F++P + I EDN+GAI+
Sbjct: 94 SDFDVNEASADVPFRELVGSLMWLATQTRPDIADAARAVARYCPSPKMVHWKAALGILGYVRRTSWMGITFEGGVVTGMSMQVFVDADYASKAA--DRRSVSGGLVMCVWGGVTWFSRTQKSVTLSTTEAEYVAIADVLKEVLFLRQVWRFILPDASMPCIPVFEDNQGAIQ 263
BLAST of mRNA_H-elongata_contig118994.1470.1 vs. uniprot
Match: UPI001E1BCD31 (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BCD31) HSP 1 Score: 129 bits (325), Expect = 5.950e-34 Identity = 71/173 (41.04%), Postives = 107/173 (61.85%), Query Frame = 1
Query: 13 SSQTDAEVEEMRQIPYREIVGALMRAATMTRPEVSFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRNLGITYRGEPGGGTKLSAWVDADYGTCTCLDTRRSGSGGTVMMAGGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKEFMIPPIDVAIKRHEDNEGAIK 531
S Q E EEM+ IPY+E VGAL+ +T TRP++S+A Q+AKF+ NPG HW+A ++ ++Y+ TR GI Y E G ++ + DADYG LD R S SG ++ + G+ISWFSR Q+ T+ +++ESE+V +E E ++R + + + I DN+GAI+
Sbjct: 22 SPQQQKEKEEMKNIPYKEAVGALLYLSTTTRPDISYAVGQVAKFSQNPGIQHWKAVKRIIRYIAGTRTYGILYSQEKG--EMVTGYTDADYGGD--LDDRTSTSGCVLLCSSGSISWFSRKQECTSLSTTESEFVTASEAAKEATWIRSLLKEIRRREQEPIPLLWDNQGAIR 190
BLAST of mRNA_H-elongata_contig118994.1470.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 132 bits (333), Expect = 1.290e-33 Identity = 72/169 (42.60%), Postives = 106/169 (62.72%), Query Frame = 1
Query: 31 EVEEMRQIPYREIVGALMRAATMTRPEVSFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRNLGITYRGEPGGGTKLSAWVDADYGTCTCLDTRRSGSGGTVMMAGGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKEFMIPPIDV-AIKRHEDNEGAIKM 534
E E +P+RE+VG+LM AT TRP+++ A +A++ +P HW+AA L Y+ RT +GIT+ G + +VDADY + RRS SGG VM GG ++WFSR QK +++E+EYVA+A+++ E+ FLRQV FM+P + I EDN+GAI++
Sbjct: 208 ENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADY--ASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQI 374
BLAST of mRNA_H-elongata_contig118994.1470.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE) HSP 1 Score: 130 bits (326), Expect = 1.460e-33 Identity = 71/169 (42.01%), Postives = 105/169 (62.13%), Query Frame = 1
Query: 31 EVEEMRQIPYREIVGALMRAATMTRPEVSFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRNLGITYRGEPGGGTKLSAWVDADYGTCTCLDTRRSGSGGTVMMAGGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKEFMIPPIDV-AIKRHEDNEGAIKM 534
E E +P+RE+VG++M AT TRP+++ A +A++ +P HW+AA L Y+ RT +GIT+ G + +VDADY RRS SGG VM GG ++WFSR QK +++E+EYVA+A+++ E+ FLRQV FM+P + I EDN+GAI++
Sbjct: 63 ENEACADVPFRELVGSVMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADY--VRKAADRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQV 229
BLAST of mRNA_H-elongata_contig118994.1470.1 vs. uniprot
Match: UPI001E1BDE4E (secreted RxLR effector protein 161-like n=1 Tax=Daphnia magna TaxID=35525 RepID=UPI001E1BDE4E) HSP 1 Score: 127 bits (320), Expect = 3.740e-33 Identity = 75/176 (42.61%), Postives = 110/176 (62.50%), Query Frame = 1
Query: 13 SSQTDAEVEEMRQIPYREIVGALMRAATMTRPEVSFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRNLGITYRGEPGGGTK-LSAWVDADYGTCTCLDTRRSGSGGTVMMAGGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQ-VKEFMIPPIDVAIKRHEDNEGAIKM 534
S QTD EVEEM+QIPY+E VGAL+ +T TRP++S+A Q+AKFN+NPG HW+A ++ +YL TR GI + P G + + + DAD+ D + S SG + GG+ SWFSR Q T+ +++E+E+VA E E ++R +KE ++ AI DN+GAI++
Sbjct: 22 SPQTDKEVEEMKQIPYKEAVGALLYLSTTTRPDISYAVGQVAKFNHNPGVQHWKAVKRIFRYLAGTREYGILFSPNPSGKEEEIVDFTDADHAGDP--DDQTSTSGCVFICHGGSFSWFSRKQGCTSLSTTEAEFVAGGEAAKEATWIRAFLKEIGKRNLE-AIPLFCDNQGAIRV 194
BLAST of mRNA_H-elongata_contig118994.1470.1 vs. uniprot
Match: A0A6H5KD14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD14_9PHAE) HSP 1 Score: 125 bits (314), Expect = 7.740e-33 Identity = 69/173 (39.88%), Postives = 106/173 (61.27%), Query Frame = 1
Query: 22 TDAEVEEMR-QIPYREIVGALMRAATMTRPEVSFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRNLGITYRGEPGGGTKLSAWVDADYGTCTCLDTRRSGSGGTVMMAGGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKEFMIPPIDV-AIKRHEDNEGAIKM 534
+D +V E +P RE++G+LM AT TRP+++ A +A++ +P HW+A L Y+ RT +GIT+ G + +VD DY + RRS SGG VM GG ++WFSR +K +++E+EYVA+A+++ E+ FLRQV FM+P + I EDN+GAI++
Sbjct: 18 SDFDVNEASADVPIRELIGSLMWLATQTRPDIANAVQAVARYCASPKMVHWKAPLGILGYVCRTNWMGITFERGVVTGMSMQVFVDPDYASKAA--DRRSVSGGLVMREGGGVTWFSRTKKCVTLSTTEAEYVAIADVMKEVLFLRQVWRFMLPDASMPCIPVFEDNQGAIQI 188
BLAST of mRNA_H-elongata_contig118994.1470.1 vs. uniprot
Match: A0A6H5JMV5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMV5_9PHAE) HSP 1 Score: 127 bits (318), Expect = 8.170e-33 Identity = 69/169 (40.83%), Postives = 104/169 (61.54%), Query Frame = 1
Query: 31 EVEEMRQIPYREIVGALMRAATMTRPEVSFAAHQLAKFNNNPGPTHWRAAQKALQYLWRTRNLGITYRGEPGGGTKLSAWVDADYGTCTCLDTRRSGSGGTVMMAGGAISWFSRVQKVTAAASSESEYVALAEMVNELRFLRQVKEFMIPPIDV-AIKRHEDNEGAIKM 534
E E +P+RE+VG+LM AT TRP+++ A +A++ +P HW+AA L Y+ RT +GI + G + +VDADY + RS SGG V+ GG ++WFSR QK A +++E++YVA+A ++ E+ FLRQV FM+P + I EDN+GAI++
Sbjct: 48 ENEACADVPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGIAFERGVVTGMSVQVFVDADY--TSKATEHRSVSGGRVICGGGCVTWFSRTQKCVALSTTETQYVAIANVLKEVLFLRQVWRFMLPDAGIPCIPVFEDNQGAIQI 214 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118994.1470.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig118994.1470.1 >prot_H-elongata_contig118994.1470.1 ID=prot_H-elongata_contig118994.1470.1|Name=mRNA_H-elongata_contig118994.1470.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=178bp IIPYSSQTDAEVEEMRQIPYREIVGALMRAATMTRPEVSFAAHQLAKFNNback to top mRNA from alignment at H-elongata_contig118994:7..540- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig118994.1470.1 ID=mRNA_H-elongata_contig118994.1470.1|Name=mRNA_H-elongata_contig118994.1470.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=534bp|location=Sequence derived from alignment at H-elongata_contig118994:7..540- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig118994:7..540- >mRNA_H-elongata_contig118994.1470.1 ID=mRNA_H-elongata_contig118994.1470.1|Name=mRNA_H-elongata_contig118994.1470.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1068bp|location=Sequence derived from alignment at H-elongata_contig118994:7..540- (Himanthalia elongata Himel1 dioecious)back to top |