mRNA_H-elongata_contig118860.1459.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118860.1459.1
Unique NamemRNA_H-elongata_contig118860.1459.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig118860.1459.1 vs. uniprot
Match: D8LTS5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTS5_ECTSI)

HSP 1 Score: 181 bits (459), Expect = 1.650e-50
Identity = 87/112 (77.68%), Postives = 99/112 (88.39%), Query Frame = 1
Query:    1 FPSDGTVIAGTTYVDESMITGESIPVAKGEGDPVVGGTVNQHGSVFVRAERVGEDTMLAQLCRLVEEAQMSKAPIQRQADRVAGVFVPTVMTISFITFLAWFMAGEAGIVPQ 336
            FP+DGT+++G TYVDESMITGES PVAK EGD V GGT NQHGSV +RAERVG++TMLAQLCRLVEEAQMSKAPIQRQADRVAGVFVP V+  S  TFL WF+AGEAG++P+
Sbjct:  812 FPTDGTLLSGQTYVDESMITGESSPVAKREGDAVCGGTANQHGSVLMRAERVGQETMLAQLCRLVEEAQMSKAPIQRQADRVAGVFVPAVICASVATFLGWFIAGEAGLIPE 923          
BLAST of mRNA_H-elongata_contig118860.1459.1 vs. uniprot
Match: A0A836CEY3_9STRA (Putative copper-transporting ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEY3_9STRA)

HSP 1 Score: 145 bits (367), Expect = 4.080e-38
Identity = 66/111 (59.46%), Postives = 91/111 (81.98%), Query Frame = 1
Query:    4 PSDGTVIAGTTYVDESMITGESIPVAKGEGDPVVGGTVNQHGSVFVRAERVGEDTMLAQLCRLVEEAQMSKAPIQRQADRVAGVFVPTVMTISFITFLAWFMAGEAGIVPQ 336
            P+DG V++GT+YVDESMITGE + V +  GD V+GGTVNQ+G + ++A +VG DT+++Q+ RLVEEAQMSKAPIQ  ADRVAGVF PTV++++ +TF+ W+ A E+G+VP 
Sbjct:  622 PTDGMVVSGTSYVDESMITGEPLAVLRQAGDEVIGGTVNQNGMLIMKAHKVGGDTLISQIGRLVEEAQMSKAPIQEFADRVAGVFTPTVLSLALLTFVVWYTAAESGLVPD 732          
BLAST of mRNA_H-elongata_contig118860.1459.1 vs. uniprot
Match: A0A5P1EIN2_ASPOF (Uncharacterized protein n=2 Tax=Asparagus officinalis TaxID=4686 RepID=A0A5P1EIN2_ASPOF)

HSP 1 Score: 142 bits (357), Expect = 8.760e-37
Identity = 64/111 (57.66%), Postives = 87/111 (78.38%), Query Frame = 1
Query:    4 PSDGTVIAGTTYVDESMITGESIPVAKGEGDPVVGGTVNQHGSVFVRAERVGEDTMLAQLCRLVEEAQMSKAPIQRQADRVAGVFVPTVMTISFITFLAWFMAGEAGIVPQ 336
            PSDG V+ G++Y+DESM+TGESIP+AKG   PV+GGT+N HG++ ++A +VG +T+L+Q+  LVE AQMSKAPIQ+ AD VA +FVPTV+ +S +TFL WF+ G  G  P 
Sbjct:  466 PSDGIVVWGSSYIDESMVTGESIPIAKGVSSPVIGGTMNLHGALHIQATKVGSNTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVLLSLLTFLGWFVCGSFGAYPS 576          
BLAST of mRNA_H-elongata_contig118860.1459.1 vs. uniprot
Match: A0A7C1KEG6_9CHLR (Heavy metal translocating P-type ATPase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C1KEG6_9CHLR)

HSP 1 Score: 141 bits (356), Expect = 1.220e-36
Identity = 66/112 (58.93%), Postives = 87/112 (77.68%), Query Frame = 1
Query:    4 PSDGTVIAGTTYVDESMITGESIPVAKGEGDPVVGGTVNQHGSVFVRAERVGEDTMLAQLCRLVEEAQMSKAPIQRQADRVAGVFVPTVMTISFITFLAWFMAGEAGIVPQV 339
            P DGTV+ G + VDESMITGESIPV KG GDPV+GGTVN+HG + VRAE+VG DT LAQ+ RLV+ AQ +KAP+Q+ ADRV+ VFVP ++ ++ +TF+ W +AG + +   V
Sbjct:  351 PVDGTVVDGASAVDESMITGESIPVDKGPGDPVIGGTVNKHGLLKVRAEKVGRDTQLAQIIRLVQLAQTAKAPVQQLADRVSAVFVPAILVVAALTFVGWLLAGRSPVAGMV 462          
BLAST of mRNA_H-elongata_contig118860.1459.1 vs. uniprot
Match: A0A835UPW7_VANPL (Uncharacterized protein n=2 Tax=Vanilla planifolia TaxID=51239 RepID=A0A835UPW7_VANPL)

HSP 1 Score: 140 bits (353), Expect = 3.100e-36
Identity = 66/110 (60.00%), Postives = 84/110 (76.36%), Query Frame = 1
Query:    4 PSDGTVIAGTTYVDESMITGESIPVAKGEGDPVVGGTVNQHGSVFVRAERVGEDTMLAQLCRLVEEAQMSKAPIQRQADRVAGVFVPTVMTISFITFLAWFMAGEAGIVP 333
            PSDG V  GT+YVDESM+TGES P+AKG   PV+GGT+N HGS+ ++A RVG  T+L+Q+  LVE AQMSKAPIQ+ AD VAG+FVPTV+ ++ +TF  WF+ G  G  P
Sbjct:  485 PSDGVVTWGTSYVDESMVTGESKPIAKGISSPVIGGTINLHGSLHIKATRVGSKTVLSQIISLVEAAQMSKAPIQQFADYVAGIFVPTVVALACLTFFLWFICGSFGAYP 594          
BLAST of mRNA_H-elongata_contig118860.1459.1 vs. uniprot
Match: UPI0013A66467 (HAD-IC family P-type ATPase n=2 Tax=Gammaproteobacteria TaxID=1236 RepID=UPI0013A66467)

HSP 1 Score: 129 bits (324), Expect = 6.750e-36
Identity = 60/104 (57.69%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    4 PSDGTVIAGTTYVDESMITGESIPVAKGEGDPVVGGTVNQHGSVFVRAERVGEDTMLAQLCRLVEEAQMSKAPIQRQADRVAGVFVPTVMTISFITFLAWFMAG 315
            P DG V+ G T VDESM+TGES+PV K EGDPV+GGT+NQ GS+ +RAE+VG++TML+++ ++V +AQ S+APIQR AD V+G FVP V+ I+ + FL W + G
Sbjct:   46 PVDGIVVEGKTTVDESMVTGESMPVTKTEGDPVIGGTINQTGSLIIRAEKVGDETMLSRIVQMVADAQRSRAPIQRMADSVSGWFVPLVILIAVVAFLIWSVWG 149          
BLAST of mRNA_H-elongata_contig118860.1459.1 vs. uniprot
Match: A0A3N1Y7J1_9GAMM (Cu+-exporting ATPase n=1 Tax=Inmirania thermothiophila TaxID=1750597 RepID=A0A3N1Y7J1_9GAMM)

HSP 1 Score: 139 bits (349), Expect = 1.020e-35
Identity = 66/119 (55.46%), Postives = 87/119 (73.11%), Query Frame = 1
Query:    4 PSDGTVIAGTTYVDESMITGESIPVAKGEGDPVVGGTVNQHGSVFVRAERVGEDTMLAQLCRLVEEAQMSKAPIQRQADRVAGVFVPTVMTISFITFLAWFMAGEAGIVPQVREREIDI 360
            P DGTV  G++YVDESM++GE +PVAKG GD VVGGTVN+ GS   RAERVG DT+LAQ+ R+VEEAQ +K PIQ+ ADR+AGVFVP VM ++ +TF+ W + G +  +       + +
Sbjct:  335 PVDGTVTEGSSYVDESMLSGEPVPVAKGPGDTVVGGTVNKTGSFTFRAERVGADTVLAQIIRMVEEAQAAKPPIQQLADRIAGVFVPVVMVVAALTFVIWLLVGPSPALSYAFVAAVSV 453          
BLAST of mRNA_H-elongata_contig118860.1459.1 vs. uniprot
Match: I0YVV9_COCSC (Copper-translocating P-t n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YVV9_COCSC)

HSP 1 Score: 139 bits (349), Expect = 1.070e-35
Identity = 65/110 (59.09%), Postives = 82/110 (74.55%), Query Frame = 1
Query:    4 PSDGTVIAGTTYVDESMITGESIPVAKGEGDPVVGGTVNQHGSVFVRAERVGEDTMLAQLCRLVEEAQMSKAPIQRQADRVAGVFVPTVMTISFITFLAWFMAGEAGIVP 333
            P+DG V+ G +YVDESM+TGES PV K  GD V+ GTVN    + V+A RVG DT LAQ+ RLVE AQMSKAPIQ  ADR++ VFVP ++ ++F+T+L WF+AGE G  P
Sbjct:  458 PADGEVVEGRSYVDESMVTGESKPVGKRNGDAVISGTVNGSAPLIVKATRVGSDTTLAQIVRLVERAQMSKAPIQAVADRISAVFVPIILAVAFVTWLGWFVAGETGAFP 567          
BLAST of mRNA_H-elongata_contig118860.1459.1 vs. uniprot
Match: UPI0013304FBA (HAD-IC family P-type ATPase n=3 Tax=Enterobacteriaceae TaxID=543 RepID=UPI0013304FBA)

HSP 1 Score: 128 bits (321), Expect = 1.350e-35
Identity = 60/104 (57.69%), Postives = 82/104 (78.85%), Query Frame = 1
Query:    4 PSDGTVIAGTTYVDESMITGESIPVAKGEGDPVVGGTVNQHGSVFVRAERVGEDTMLAQLCRLVEEAQMSKAPIQRQADRVAGVFVPTVMTISFITFLAWFMAG 315
            P DG VI G T VDESM+TGES+PV K +GDPV+GGT+NQ GS+ +RAE+VG++TML+++ ++V +AQ S+APIQR AD V+G FVP V+ I+ + FL W + G
Sbjct:   13 PVDGIVIEGKTTVDESMVTGESMPVTKTKGDPVIGGTINQTGSLIIRAEKVGDETMLSRIVQMVADAQRSRAPIQRMADSVSGWFVPLVILIAVVAFLIWSVWG 116          
BLAST of mRNA_H-elongata_contig118860.1459.1 vs. uniprot
Match: A0A0Q0ZRQ4_9BACI (Copper-exporting P-type ATPase n=6 Tax=Geobacillus TaxID=129337 RepID=A0A0Q0ZRQ4_9BACI)

HSP 1 Score: 138 bits (348), Expect = 1.360e-35
Identity = 68/119 (57.14%), Postives = 88/119 (73.95%), Query Frame = 1
Query:    4 PSDGTVIAGTTYVDESMITGESIPVAKGEGDPVVGGTVNQHGSVFVRAERVGEDTMLAQLCRLVEEAQMSKAPIQRQADRVAGVFVPTVMTISFITFLAWFMAGEAGIVPQVREREIDI 360
            P DGTVIAG + VDESMITGESIPV K EGD V+G T+NQ+G + +RAE+VG+DT LA + R+VEEAQ SKAPIQR AD ++G+FVP V+ I+ ++FL W++    G V    E  I +
Sbjct:  329 PVDGTVIAGASSVDESMITGESIPVDKKEGDSVIGATINQNGVLTIRAEKVGKDTALAHIVRIVEEAQGSKAPIQRMADVISGIFVPIVVAIATVSFLVWYLIVAPGDVTAALEAAIAV 447          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118860.1459.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTS5_ECTSI1.650e-5077.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CEY3_9STRA4.080e-3859.46Putative copper-transporting ATPase n=1 Tax=Tribon... [more]
A0A5P1EIN2_ASPOF8.760e-3757.66Uncharacterized protein n=2 Tax=Asparagus officina... [more]
A0A7C1KEG6_9CHLR1.220e-3658.93Heavy metal translocating P-type ATPase n=1 Tax=Ch... [more]
A0A835UPW7_VANPL3.100e-3660.00Uncharacterized protein n=2 Tax=Vanilla planifolia... [more]
UPI0013A664676.750e-3657.69HAD-IC family P-type ATPase n=2 Tax=Gammaproteobac... [more]
A0A3N1Y7J1_9GAMM1.020e-3555.46Cu+-exporting ATPase n=1 Tax=Inmirania thermothiop... [more]
I0YVV9_COCSC1.070e-3559.09Copper-translocating P-t n=1 Tax=Coccomyxa subelli... [more]
UPI0013304FBA1.350e-3557.69HAD-IC family P-type ATPase n=3 Tax=Enterobacteria... [more]
A0A0Q0ZRQ4_9BACI1.360e-3557.14Copper-exporting P-type ATPase n=6 Tax=Geobacillus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118860contigH-elongata_contig118860:95..1138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score181.4
Seed ortholog evalue2.5e-43
Seed eggNOG ortholog2880.D8LTS5
KEGG rclassRC00002
KEGG koko:K17686
KEGG TC3.A.3.5
KEGG ReactionR00086
KEGG Pathwayko01524,ko04016,map01524,map04016
EggNOG free text desc.cation-transporting ATPase activity
EggNOG OGsCOG2217@1,KOG0207@2759
EC3.6.3.54
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size363
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929695.3811014-CDS-H-elongata_contig118860:94..2741622929695.3811014-CDS-H-elongata_contig118860:94..274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118860 95..274 +
1691679122.0979307-CDS-H-elongata_contig118860:94..2741691679122.0979307-CDS-H-elongata_contig118860:94..274Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118860 95..274 +
1622929695.4186668-CDS-H-elongata_contig118860:955..11381622929695.4186668-CDS-H-elongata_contig118860:955..1138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118860 956..1138 +
1691679122.1093287-CDS-H-elongata_contig118860:955..11381691679122.1093287-CDS-H-elongata_contig118860:955..1138Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118860 956..1138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118860.1459.1prot_H-elongata_contig118860.1459.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118860 95..1138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118860.1459.1

>prot_H-elongata_contig118860.1459.1 ID=prot_H-elongata_contig118860.1459.1|Name=mRNA_H-elongata_contig118860.1459.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
FPSDGTVIAGTTYVDESMITGESIPVAKGEGDPVVGGTVNQHGSVFVRAE
RVGEDTMLAQLCRLVEEAQMSKAPIQRQADRVAGVFVPTVMTISFITFLA
WFMAGEAGIVPQVREREIDI*
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mRNA from alignment at H-elongata_contig118860:95..1138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118860.1459.1 ID=mRNA_H-elongata_contig118860.1459.1|Name=mRNA_H-elongata_contig118860.1459.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1044bp|location=Sequence derived from alignment at H-elongata_contig118860:95..1138+ (Himanthalia elongata Himel1 dioecious)
TTTCCTTCGGACGGAACGGTCATCGCCGGCACAACCTACGTGGACGAGAG CATGATCACGGGCGAGTCCATCCCGGTGGCCAAGGGCGAAGGCGATCCCG TGGTCGGGGGCACCGTGAACCAGCACGGGTCGGTCTTTGTTAGGGCGGAG AGGGTCGGGGAGGACACAATGCTCGCTCAGGTGAAATACATTTCGATTAG ACATTTAGAGAGAGACCTATATTATATATACTACAGTACAGTACATTACA TTACATTACTATAATAGTTACAGTATAGTTTTGAGAAAGGGAACTACTAT AGAAAAACATGTTAAAGAGACAGATGATATTATAATATATTATTATGTAT ATGTGAAAATATATACAGTACTGTACTTTTTATATTTTTTGAGAAAGGGA GCTATTATAAAAAATGTATTTAAGAGAGAGATCATATATATATATATAAA AAATATTATTTATAATTTTGTGAAAGGGAGCTATTTATAGAAAATACGCG TTCGAATGCCGCCGTAGCTGTCTCTCTAGACCAGAATTACTCCTAGGAAC ATTCTCTGGAGTAATTACCATAAATACTCTGTATAGACTACGGTGATAGA TTTGAAGTAGCGATCGATCGATCCCTCACTAGGACTTGTCTGAAATGTCT CTCTTTTGTCTGAAATATCTCTTTTTTGTCTGAAATGTCTCTCTTTGTGT CTGAAATGTCTCTCTTTGTGTCTGAAATGTCTCTCTTTTAAATGTATGAC TTGTCTGCCGGTGGTTTTGTCTTTCTCTGCTTTTATGTCTCGTCTCCCCA TAATCTCGTGGATGTCTCGTGTCGTGTGCGGTGTGTCGTGTGCGATGTAC GGTTTCGAAAGCTCTGTCGGCTTGTGGAGGAAGCCCAGATGTCCAAGGCG CCGATCCAGAGGCAGGCCGACCGAGTAGCGGGCGTATTCGTCCCTACTGT TATGACGATAAGCTTCATCACTTTTCTTGCCTGGTTCATGGCGGGCGAGG CTGGCATCGTACCCCAGGTCAGGGAGAGAGAGATAGATATATAG
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Coding sequence (CDS) from alignment at H-elongata_contig118860:95..1138+

>mRNA_H-elongata_contig118860.1459.1 ID=mRNA_H-elongata_contig118860.1459.1|Name=mRNA_H-elongata_contig118860.1459.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig118860:95..1138+ (Himanthalia elongata Himel1 dioecious)
TTTCCTTCGGACGGAACGGTCATCGCCGGCACAACCTACGTGGACGAGAG
CATGATCACGGGCGAGTCCATCCCGGTGGCCAAGGGCGAAGGCGATCCCG
TGGTCGGGGGCACCGTGAACCAGCACGGGTCGGTCTTTGTTAGGGCGGAG
AGGGTCGGGGAGGACACAATGCTCGCTCAGTTTCCTTCGGACGGAACGGT
CATCGCCGGCACAACCTACGTGGACGAGAGCATGATCACGGGCGAGTCCA
TCCCGGTGGCCAAGGGCGAAGGCGATCCCGTGGTCGGGGGCACCGTGAAC
CAGCACGGGTCGGTCTTTGTTAGGGCGGAGAGGGTCGGGGAGGACACAAT
GCTCGCTCAGCTCTGTCGGCTTGTGGAGGAAGCCCAGATGTCCAAGGCGC
CGATCCAGAGGCAGGCCGACCGAGTAGCGGGCGTATTCGTCCCTACTGTT
ATGACGATAAGCTTCATCACTTTTCTTGCCTGGTTCATGGCGGGCGAGGC
TGGCATCGTACCCCAGGTCAGGGAGAGAGAGATAGATATATAGCTCTGTC
GGCTTGTGGAGGAAGCCCAGATGTCCAAGGCGCCGATCCAGAGGCAGGCC
GACCGAGTAGCGGGCGTATTCGTCCCTACTGTTATGACGATAAGCTTCAT
CACTTTTCTTGCCTGGTTCATGGCGGGCGAGGCTGGCATCGTACCCCAGG
TCAGGGAGAGAGAGATAGATATATAG
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