mRNA_H-elongata_contig118757.1452.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118757.1452.1
Unique NamemRNA_H-elongata_contig118757.1452.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118757.1452.1 vs. uniprot
Match: D8LLB0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LLB0_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 2.530e-39
Identity = 69/85 (81.18%), Postives = 75/85 (88.24%), Query Frame = 1 
Query:   10 PSRFGQAEHHHAWSEVYKYWKEKRSKLGKPLLRRFWAVTSPNDTDPHKVFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKVQ 264
            P    QA HH AW+EVY++WK+KRS++GKPLLRRFW VT  NDTDPHKVFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEK Q
Sbjct:  136 PIPLPQAVHHDAWTEVYRFWKDKRSRMGKPLLRRFWPVTPSNDTDPHKVFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKQQ 220
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BLAST of mRNA_H-elongata_contig118757.1452.1 vs. uniprot
Match: A0A835YT95_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YT95_9STRA)

HSP 1 Score: 118 bits (296), Expect = 1.490e-29
Identity = 54/85 (63.53%), Postives = 70/85 (82.35%), Query Frame = 1 
Query:   13 SRFGQAEHHH--AWSEVYKYWKEKRSKLGKPLLRRFWAVTSPNDTDPHKVFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKV 261
            S+ G  +H +   W++VY YWK++R KLGKPLL+RFW  TS NDTDPHKVFRPREKERYKLR+ R N+L+SF K+QQ+K+DF+K+
Sbjct:  144 SQLGMEKHQYQAVWNDVYSYWKQRRQKLGKPLLQRFWPTTSANDTDPHKVFRPREKERYKLRRSRVNELESFNKMQQLKQDFDKL 228
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BLAST of mRNA_H-elongata_contig118757.1452.1 vs. uniprot
Match: A0A7R9Y8G1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9Y8G1_9STRA)

HSP 1 Score: 114 bits (284), Expect = 1.400e-27
Identity = 50/76 (65.79%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:   34 HHHAWSEVYKYWKEKRSKLGKPLLRRFWAVTSPNDTDPHKVFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKV 261
            H   W++VY+YW  KR +L +PLLR+FW VTS ND +PHKVFRPREKERYKLR++R+NDLDSFR++QQ+++DFEK+
Sbjct:  162 HGRMWADVYQYWHAKRHRLKRPLLRKFWPVTSVNDNNPHKVFRPREKERYKLRRNRRNDLDSFRRMQQLRRDFEKL 237
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BLAST of mRNA_H-elongata_contig118757.1452.1 vs. uniprot
Match: F0YRC6_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YRC6_AURAN)

HSP 1 Score: 111 bits (277), Expect = 2.630e-27
Identity = 51/67 (76.12%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:   55 VYKYWKEKRSKLGKPLLRRFWAVTSPNDTDPHKVFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFE 255
             ++YW  KRSKLGKPLLRRFW  T+P DT+PH VFRPREKERYKLRKHRKND+D+FRKLQQ+++DFE
Sbjct:  150 AHQYWLAKRSKLGKPLLRRFWPKTAPTDTNPHCVFRPREKERYKLRKHRKNDVDAFRKLQQLRRDFE 216
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BLAST of mRNA_H-elongata_contig118757.1452.1 vs. uniprot
Match: A0A8J2SPQ6_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SPQ6_9STRA)

HSP 1 Score: 111 bits (278), Expect = 1.080e-26
Identity = 50/67 (74.63%), Postives = 60/67 (89.55%), Query Frame = 1 
Query:   55 VYKYWKEKRSKLGKPLLRRFWAVTSPNDTDPHKVFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFE 255
            ++ YW +KR KLGKPLLRRFW  TSP D++PH VFRPREKERYKLRKHRKND+D+FRKLQQ+++DFE
Sbjct:  327 IHAYWLQKRQKLGKPLLRRFWPATSPTDSNPHCVFRPREKERYKLRKHRKNDVDAFRKLQQLRRDFE 393
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BLAST of mRNA_H-elongata_contig118757.1452.1 vs. uniprot
Match: A0A7S1TPQ6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TPQ6_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.320e-26
Identity = 46/69 (66.67%), Postives = 61/69 (88.41%), Query Frame = 1 
Query:   34 HHHAWSEVYKYWKEKRSKLGKPLLRRFWAVTSPNDTDPHKVFRPREKERYKLRKHRKNDLDSFRKLQQV 240
            H   W++VYKYW+EKR +L +PLLR++W VTS ND +PHKVFRPREKERYKLR++R+NDL+SFR++QQ+
Sbjct:  141 HGRMWADVYKYWEEKRKRLKRPLLRKYWPVTSVNDNNPHKVFRPREKERYKLRRNRRNDLESFRRMQQL 209
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BLAST of mRNA_H-elongata_contig118757.1452.1 vs. uniprot
Match: A0A225X147_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X147_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.350e-25
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:   52 EVYKYWKEKRSKLGKPLLRRFWAVTSPNDTDPHKVFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKV 261
            +VY YW  KR KL +PLLRRFW  T  NDT+PH VFRPREKERYKLRKHRKNDL+ FRKLQQ++ DFE+V
Sbjct:  195 DVYAYWAAKRQKLRRPLLRRFWPQTPLNDTNPHSVFRPREKERYKLRKHRKNDLEGFRKLQQLRVDFERV 264
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BLAST of mRNA_H-elongata_contig118757.1452.1 vs. uniprot
Match: A0A425CE82_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CE82_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.480e-25
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:   52 EVYKYWKEKRSKLGKPLLRRFWAVTSPNDTDPHKVFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKV 261
            +VY YW  KR KL +PLLRRFW  T  NDT+PH VFRPREKERYKLRKHRKNDL+ FRKLQQ++ DFE+V
Sbjct:  195 DVYAYWAAKRQKLRRPLLRRFWPQTPLNDTNPHSVFRPREKERYKLRKHRKNDLEGFRKLQQLRVDFERV 264
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BLAST of mRNA_H-elongata_contig118757.1452.1 vs. uniprot
Match: H3GTE9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GTE9_PHYRM)

HSP 1 Score: 108 bits (269), Expect = 1.480e-25
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:   52 EVYKYWKEKRSKLGKPLLRRFWAVTSPNDTDPHKVFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKV 261
            +VY YW  KR KL +PLLRRFW  T  NDT+PH VFRPREKERYKLRKHRKNDL+ FRKLQQ++ DFE+V
Sbjct:  195 DVYAYWAAKRQKLRRPLLRRFWPQTPLNDTNPHSVFRPREKERYKLRKHRKNDLEGFRKLQQLRVDFERV 264
[Close]
BLAST of mRNA_H-elongata_contig118757.1452.1 vs. uniprot
Match: G4YJM1_PHYSP (Uncharacterized protein n=4 Tax=Phytophthora TaxID=4783 RepID=G4YJM1_PHYSP)

HSP 1 Score: 107 bits (268), Expect = 1.880e-25
Identity = 51/70 (72.86%), Postives = 58/70 (82.86%), Query Frame = 1 
Query:   52 EVYKYWKEKRSKLGKPLLRRFWAVTSPNDTDPHKVFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKV 261
            +VY YW  KR KL +PLLRRFW  T  NDT+PH VFRPREKERYKLRKHRKNDL+ FRKLQQ++ DFE+V
Sbjct:  196 DVYAYWAAKRQKLRRPLLRRFWPQTPLNDTNPHAVFRPREKERYKLRKHRKNDLEGFRKLQQLRVDFERV 265
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118757.1452.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLB0_ECTSI2.530e-3981.18Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YT95_9STRA1.490e-2963.53Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7R9Y8G1_9STRA1.400e-2765.79Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
F0YRC6_AURAN2.630e-2776.12Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A8J2SPQ6_9STRA1.080e-2674.63Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S1TPQ6_9STRA3.320e-2666.67Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A225X147_9STRA1.350e-2572.86Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A425CE82_9STRA1.480e-2572.86Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
H3GTE9_PHYRM1.480e-2572.86Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
G4YJM1_PHYSP1.880e-2572.86Uncharacterized protein n=4 Tax=Phytophthora TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118757contigH-elongata_contig118757:1..764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.7
Seed ortholog evalue4.9e-33
Seed eggNOG ortholog2880.D8LLB0
Preferred nameEPC1
KEGG koko:K11322
GOsGO:0000122,GO:0000123,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0000902,GO:0000904,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005700,GO:0005720,GO:0005725,GO:0006139,GO:0006259,GO:0006281,GO:0006325,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006464,GO:0006473,GO:0006475,GO:0006725,GO:0006807,GO:0006928,GO:0006935,GO:0006950,GO:0006974,GO:0006996,GO:0007275,GO:0007399,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009653,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009896,GO:0009987,GO:0010467,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010557,GO:0010558,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010948,GO:0012505,GO:0016020,GO:0016043,GO:0016070,GO:0016239,GO:0016241,GO:0016358,GO:0016569,GO:0016570,GO:0016573,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022008,GO:0030030,GO:0030154,GO:0030182,GO:0031090,GO:0031175,GO:0031248,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031331,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0032777,GO:0032989,GO:0032990,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0035267,GO:0036211,GO:0040011,GO:0040029,GO:0042221,GO:0042330,GO:0043044,GO:0043170,GO:0043189,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0043968,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0045595,GO:0045597,GO:0045786,GO:0045814,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048468,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048813,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051147,GO:0051149,GO:0051153,GO:0051155,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0051716,GO:0051726,GO:0060255,GO:0065007,GO:0070013,GO:0070316,GO:0070317,GO:0070983,GO:0071704,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0097485,GO:0097659,GO:0120036,GO:0120039,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902493,GO:1902494,GO:1902562,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.internal peptidyl-lysine acetylation
EggNOG OGsKOG2261@1,KOG2261@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929694.8960118-CDS-H-elongata_contig118757:0..1111622929694.8960118-CDS-H-elongata_contig118757:0..111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118757 1..111 -
1691679121.9316077-CDS-H-elongata_contig118757:0..1111691679121.9316077-CDS-H-elongata_contig118757:0..111Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118757 1..111 -
1622929694.909374-CDS-H-elongata_contig118757:611..7641622929694.909374-CDS-H-elongata_contig118757:611..764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118757 612..764 -
1691679121.945081-CDS-H-elongata_contig118757:611..7641691679121.945081-CDS-H-elongata_contig118757:611..764Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118757 612..764 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118757.1452.1prot_H-elongata_contig118757.1452.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118757 1..764 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118757.1452.1

>prot_H-elongata_contig118757.1452.1 ID=prot_H-elongata_contig118757.1452.1|Name=mRNA_H-elongata_contig118757.1452.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MFSPSRFGQAEHHHAWSEVYKYWKEKRSKLGKPLLRRFWAVTSPNDTDPH
KVFRPREKERYKLRKHRKNDLDSFRKLQQVKKDFEKVQ
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mRNA from alignment at H-elongata_contig118757:1..764-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118757.1452.1 ID=mRNA_H-elongata_contig118757.1452.1|Name=mRNA_H-elongata_contig118757.1452.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=764bp|location=Sequence derived from alignment at H-elongata_contig118757:1..764- (Himanthalia elongata Himel1 dioecious)
ATGTTTTCCCCCTCGCGCTTCGGTCAGGCCGAGCACCACCACGCCTGGTC
GGAGGTATACAAATACTGGAAGGAGAAGCGATCAAAGCTGGGTAAGCCGC
TTCTTCGGCGGTTCTGGGCCGTGACGTCACCCAACGACACAGACCCTCAC
AAGGTGCGACATGCGACATGTTGGGCACGCTGCAGCATCTTCCGACGCCG
ATGCCGCTGTTGATGTTGATGTTGATGTAGCTTTTGGGTAGGGCCGCGCC
CTCGTGTGGCGTCTTTGCTTGATGTAAGTATTCGAGGGGGGGGTCTTCTT
ATATTTTTCTGTCATCTCGAAGCTCTTTTTTGTTACCCTTCTAGTCTACA
CCAATATGCTATTGCAGTCGCGTCGTGTCGTGTCGTGTCGTCCTATTGTC
ATATTGGTACTACCTACAACAACATGGTCATTTCCTCTGTCCCCTTCTCC
ACGGGGCGGGCTCTCTAGGGTTGTTTACCCTCGAGTATTATTTTATCTCC
TCTTCTCCACGAAAACGCGCCGTCAAGAGTTCCAGTAACTCTCCCCCCCA
TCCGGGGGGTCCTCCCGAGGACGCGTGGTCATTGGTCTAACATATAGTAG
TCAAAACTTGAGTATGCCCCGCCCCCCTTTTTTGCTGTGACTGTTCCTGT
TAGGTGTTCCGACCTCGAGAAAAAGAACGGTACAAACTCAGAAAGCATCG
GAAGAACGATCTCGACAGCTTCCGGAAGCTCCAGCAGGTCAAGAAGGACT
TCGAAAAGGTGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig118757:1..764-

>mRNA_H-elongata_contig118757.1452.1 ID=mRNA_H-elongata_contig118757.1452.1|Name=mRNA_H-elongata_contig118757.1452.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig118757:1..764- (Himanthalia elongata Himel1 dioecious)
ATGTTTTCCCCCTCGCGCTTCGGTCAGGCCGAGCACCACCACGCCTGGTC
GGAGGTATACAAATACTGGAAGGAGAAGCGATCAAAGCTGGGTAAGCCGC
TTCTTCGGCGGTTCTGGGCCGTGACGTCACCCAACGACACAGACCCTCAC
AAGATGTTTTCCCCCTCGCGCTTCGGTCAGGCCGAGCACCACCACGCCTG
GTCGGAGGTATACAAATACTGGAAGGAGAAGCGATCAAAGCTGGGTAAGC
CGCTTCTTCGGCGGTTCTGGGCCGTGACGTCACCCAACGACACAGACCCT
CACAAGGTGTTCCGACCTCGAGAAAAAGAACGGTACAAACTCAGAAAGCA
TCGGAAGAACGATCTCGACAGCTTCCGGAAGCTCCAGCAGGTCAAGAAGG
ACTTCGAAAAGGTGCAGGTGTTCCGACCTCGAGAAAAAGAACGGTACAAA
CTCAGAAAGCATCGGAAGAACGATCTCGACAGCTTCCGGAAGCTCCAGCA
GGTCAAGAAGGACTTCGAAAAGGTGCAG
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