mRNA_H-elongata_contig11871.1448.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11871.1448.1
Unique NamemRNA_H-elongata_contig11871.1448.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11871.1448.1 vs. uniprot
Match: D8LTE8_ECTSI (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTE8_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 3.280e-32
Identity = 59/72 (81.94%), Postives = 68/72 (94.44%), Query Frame = 2 
Query:  248 ADVVVEFTRTGKTVNAVVGTPLSQMCAKHGIKVKYNCKQGNCATCEINIDGRYVKACQGKVPSSRRIVKIKA 463
            A+VVVEFT + KTVNAVVG+PLSQ+CAK+GIKVKY+CKQG+CATC INIDGR VKACQG+VP+SRRIVKIKA
Sbjct:    2 ANVVVEFTNSKKTVNAVVGSPLSQLCAKNGIKVKYSCKQGDCATCSINIDGRNVKACQGRVPASRRIVKIKA 73
[Close]
BLAST of mRNA_H-elongata_contig11871.1448.1 vs. uniprot
Match: A0A835Z7N4_9STRA (2Fe-2S ferredoxin-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7N4_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 1.120e-14
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 2 
Query:  254 VVVEFTRTGKTVNAVVGTPLSQMCAKHGIKVKYNCKQGNCATCEINIDGRYVKACQGKV-PSSRRIVKIK 460
            + V FT + K + A  GT LSQ+ AK G+KV+YNCK G CATC +N+DGR  KAC  K+ P +RR+VKIK
Sbjct:   48 IEVHFTVSDKKITAEGGTLLSQVAAKAGVKVRYNCKAGTCATCVLNVDGRMQKACVTKLDPFTRRVVKIK 117
[Close]
BLAST of mRNA_H-elongata_contig11871.1448.1 vs. uniprot
Match: A0A7S4JWQ5_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JWQ5_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 2.990e-12
Identity = 32/60 (53.33%), Postives = 43/60 (71.67%), Query Frame = 2 
Query:  263 EFTRTGKTVNAVVGTPLSQMCAKHGIKVKYNCKQGNCATCEINIDGRYVKACQGKVPSSR 442
            E T  GK V AVVG  +SQ+ A   +K+ Y+CK+G+C TCEIN++GR VKACQG +P  +
Sbjct:   71 EVTINGKQVKAVVGQKVSQVAASARVKISYSCKKGDCGTCEINMNGRVVKACQGVIPKGK 130
[Close]
BLAST of mRNA_H-elongata_contig11871.1448.1 vs. uniprot
Match: A0A7R9VC32_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VC32_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.140e-10
Identity = 31/55 (56.36%), Postives = 40/55 (72.73%), Query Frame = 2 
Query:  263 EFTRTGKTVNAVVGTPLSQMCAKHGIKVKYNCKQGNCATCEINIDGRYVKACQGK 427
            E T  GK V AVVG  +SQ+ A   +K+ Y+CK+G+C TCEIN++GR VKACQ K
Sbjct:   51 EVTINGKPVKAVVGQKVSQVAASARVKITYSCKKGDCGTCEINMNGRVVKACQEK 105
[Close]
BLAST of mRNA_H-elongata_contig11871.1448.1 vs. uniprot
Match: A0A7S2SLY0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2SLY0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.680e-10
Identity = 27/69 (39.13%), Postives = 45/69 (65.22%), Query Frame = 2 
Query:  257 VVEFTRTGKTVNAVVGTPLSQMCAKHGIKVKYNCKQGNCATCEINIDGRYVKACQGKVPSSRRIVKIKA 463
            + + T  GK +    G+P+   CAK G+K +Y+CK+G+CA+C I++ G  +K C GKVP + R+  ++A
Sbjct:   40 MTKLTYNGKAIEFKEGSPMKSACAKLGMKPRYSCKKGDCASCTISVGGTRIKPCVGKVPPAPRLKSLQA 108
[Close]
BLAST of mRNA_H-elongata_contig11871.1448.1 vs. uniprot
Match: A0A7S0B0B1_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0B0B1_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 1.710e-9
Identity = 28/60 (46.67%), Postives = 40/60 (66.67%), Query Frame = 2 
Query:  278 GKTVNAVVGTPLSQMCAKHGIKVKYNCKQGNCATCEINIDGRYVKACQGKVPSSRRIVKI 457
            GK VNAVVG  +SQ+ A   +K+ Y+CK G+C TC + I+GR  KACQ  VP+ +  + +
Sbjct:   93 GKPVNAVVGQKISQVAASARVKIPYSCKNGDCGTCVVKINGRNQKACQATVPNGKCQISV 152
[Close]
BLAST of mRNA_H-elongata_contig11871.1448.1 vs. uniprot
Match: A0A7S2U7E3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U7E3_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.120e-8
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 2 
Query:  263 EFTRTGKTVNAVVGTPLSQMCAKHGIKVKYNCKQGNCATCEINIDGRYVKACQGKVPS 436
            + T  GK+V A+VG  +S + A   +K+ YNCK G+C TC I ++GR  KACQ  +PS
Sbjct:   83 KVTINGKSVKAIVGQKVSVVAAAARVKIPYNCKNGDCGTCMIKVNGRKAKACQMNIPS 140
[Close]
BLAST of mRNA_H-elongata_contig11871.1448.1 vs. uniprot
Match: A0A7S2D671_9STRA (Hypothetical protein n=2 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D671_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 6.370e-8
Identity = 24/59 (40.68%), Postives = 38/59 (64.41%), Query Frame = 2 
Query:  281 KTVNAVVGTPLSQMCAKHGIKVKYNCKQGNCATCEINIDGRYVKACQGKVPSSRRIVKI 457
            K ++   G+ +   C K GIKV  NCK+G+C TC +N+ G+ +KAC GKVP + ++  +
Sbjct:   65 KKISVPEGSSMMAACKKLGIKVPTNCKKGDCGTCTVNVGGKNIKACVGKVPPAPKLKSV 123
[Close]
BLAST of mRNA_H-elongata_contig11871.1448.1 vs. uniprot
Match: A0A8J5X503_DIALT (2Fe-2S ferredoxin-type domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5X503_DIALT)

HSP 1 Score: 62.0 bits (149), Expect = 7.350e-8
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 2 
Query:  254 VVVEFTRTGKTVNAVVGTPLSQMCAKHGIKVKYNCKQGNCATCEINIDGRYVKACQGKVP 433
            V V F+  G+TVNAV G  LS +    G K++Y+CK G+C TC + ++GR V+AC  KVP
Sbjct:   71 VEVSFSN-GRTVNAVPGQGLSDVARAAGSKIQYDCKNGDCGTCTVKLNGRSVRACVAKVP 129
[Close]
BLAST of mRNA_H-elongata_contig11871.1448.1 vs. uniprot
Match: A0A7S0EBW5_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0EBW5_9EUKA)

HSP 1 Score: 60.5 bits (145), Expect = 2.340e-7
Identity = 32/66 (48.48%), Postives = 43/66 (65.15%), Query Frame = 2 
Query:  245 QADVVVEFTRTG-KTVNAVVGTPLSQMCAKHGIKVKYNCKQGNCATCEINIDGRY-VKACQG-KVP 433
            +  V V F + G K V A+ G  + ++C K GIKVK++CK G C TCE++I+GR   K CQG KVP
Sbjct:   87 KGQVEVTFPQKGNKVVKAMQGDAIGKVCQKAGIKVKFDCKNGRCGTCEVSINGRSKAKVCQGAKVP 152
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11871.1448.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTE8_ECTSI3.280e-3281.942Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A835Z7N4_9STRA1.120e-1455.712Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S4JWQ5_9STRA2.990e-1253.33Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7R9VC32_9STRA1.140e-1056.36Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A7S2SLY0_9STRA2.680e-1039.13Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S0B0B1_9STRA1.710e-946.67Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2U7E3_9STRA3.120e-846.55Hypothetical protein (Fragment) n=1 Tax=Attheya se... [more]
A0A7S2D671_9STRA6.370e-840.68Hypothetical protein n=2 Tax=Florenciella parvula ... [more]
A0A8J5X503_DIALT7.350e-848.332Fe-2S ferredoxin-type domain-containing protein n... [more]
A0A7S0EBW5_9EUKA2.340e-748.48Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11871contigH-elongata_contig11871:6366..7880 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionBeta-grasp domain
Ec32 orthologEc-02_006080.1
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size1105
Cds size147
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11871.1448.1prot_H-elongata_contig11871.1448.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11871 7005..7561 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929694.5489907-UTR-H-elongata_contig11871:6365..70041622929694.5489907-UTR-H-elongata_contig11871:6365..7004Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11871 6366..7004 -
1691679121.8012102-UTR-H-elongata_contig11871:6365..70041691679121.8012102-UTR-H-elongata_contig11871:6365..7004Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11871 6366..7004 -
1622929694.595003-UTR-H-elongata_contig11871:7561..78801622929694.595003-UTR-H-elongata_contig11871:7561..7880Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11871 7562..7880 -
1691679121.8290515-UTR-H-elongata_contig11871:7561..78801691679121.8290515-UTR-H-elongata_contig11871:7561..7880Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11871 7562..7880 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929694.5646722-CDS-H-elongata_contig11871:7004..71271622929694.5646722-CDS-H-elongata_contig11871:7004..7127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11871 7005..7127 -
1691679121.8108044-CDS-H-elongata_contig11871:7004..71271691679121.8108044-CDS-H-elongata_contig11871:7004..7127Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11871 7005..7127 -
1622929694.5819921-CDS-H-elongata_contig11871:7537..75611622929694.5819921-CDS-H-elongata_contig11871:7537..7561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11871 7538..7561 -
1691679121.8196208-CDS-H-elongata_contig11871:7537..75611691679121.8196208-CDS-H-elongata_contig11871:7537..7561Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11871 7538..7561 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11871.1448.1

>prot_H-elongata_contig11871.1448.1 ID=prot_H-elongata_contig11871.1448.1|Name=mRNA_H-elongata_contig11871.1448.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=49bp
MCAKHGIKVKYNCKQGNCATCEINIDGRYVKACQGKVPSSRRIVKIKA*
back to top

mRNA from alignment at H-elongata_contig11871:6366..7880-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11871.1448.1 ID=mRNA_H-elongata_contig11871.1448.1|Name=mRNA_H-elongata_contig11871.1448.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1515bp|location=Sequence derived from alignment at H-elongata_contig11871:6366..7880- (Himanthalia elongata Himel1 dioecious)
CCACGAGTGAGTGTGCTTTCTTACCTTGCGACCACGGGCTGAATTTTGAC
ATCAGCTTGTATGGAAATTCAATCAAAAATCAACTTCTCAAGTATAGAGT
TTAGACTTGTGTCGCGCAACGGTGTACAGCGCTCGTACAGGTGTTCGCGT
TGGGGGGGGGTATAAATTCTGACCCCTTAGTTCGCGTGATGACTATCTCT
GAACTGTTTGATTGACGGTCTCGTGCAACCCGCGTCCCACGCTTCAGGCG
GACGTAGTGGTGGAGTTTACCCGCACGGGCAAGACGGTCAACGCGGTCGT
GGGCACCCCTCTCTCACAGATGTGCGCGAAGCACGGGATCAAGGTGATTA
TATTCCACCCCTCCGAATCATTTTGGCACTGTAGCACTACAGCATCTCAG
TTGTCTTGGGGGGACGGGGACGGGGAGGCAGAGTGTTTATTTATTATTTC
TACTTCTATCTCGAGCACTATCTCTAGCATGATCGAACGAAACTTGTCGC
CGAGCTGCCGATCAGTTATATCTTCCCCCAAATGGAAGCTCCTTGTATGT
ATTTGAGTACATGATGAGATCGACGACGCCGGCCAAAGCAAACCGTACTT
TTATAAGACCACCCCACCCTGAGGGCTATTTCTAGTGATCCTTCCACGCG
CGTCGTTAGCTTCGCCCTCTCCGGGTTATATTAGTAGACATTCTCTACCT
TGCCGCGTGGTGTCCCGACGCCCCTCGCACTGGCGTAATACCGACGGCGA
CAGGTGAAATATAATTGCAAGCAGGGGAACTGCGCAACGTGTGAGATCAA
CATCGACGGTCGATATGTGAAAGCCTGTCAGGGGAAGGTTCCATCGTCCC
GCCGCATTGTCAAGATCAAGGCATGAGAAAACGATTGGACCAAAGGCTGG
CGCTTAGCCCTTAGCGACTAGCCCAGCGCGGCGGTTGATAGCTGAATGAA
GATAGGCGTGATGGCTGCCACATGTTGATGCTACCTCTCGACTAGTAATA
CCTTCATCGTGTCCTTTATTCTATTCCGTACGTATATAGGTCAAACTTCC
GTCTCAGATTAATTTGACCCCCATTTTTGTTGGAGAAAGAAGAGAAGTTC
CTATGAGCTGAATGCCATGCACGCCCAACAGGCATACACGTATGCCTCCT
GCAATGCGGAGGATTAGTGCGAGGTTTCTTGGGTGATTTAGGGGGGAGGG
GTTAGAGCAACCAGAGAAGAGCACTGAAGTTGCTCTGAGACTTAAGATTT
TGACAGAGAATGCCTCGCCTCGATCGGTTTCCGTCCAGCATCGCTGCTTT
GTGGACCTCGGGAAGAGTGCTTTGAATCGGTCGATTCGCTAATGCTCCAT
AGCTTGTTCCAGAAACATTGTAGAAAAAAATATTTGCAAACTTCATCGTG
CAGACCGCAGTAACCGTCGTGTCAGAAACTGTAGCGGGGATTGAGGTGAA
CTTGGCGATGATGATGTAACCACATGATGATGTCATATTCTCGACCGCAC
TAAACCGTCCTGTAA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11871:6366..7880-

>mRNA_H-elongata_contig11871.1448.1 ID=mRNA_H-elongata_contig11871.1448.1|Name=mRNA_H-elongata_contig11871.1448.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=294bp|location=Sequence derived from alignment at H-elongata_contig11871:6366..7880- (Himanthalia elongata Himel1 dioecious)
ATGTGCGCGAAGCACGGGATCAAGATGTGCGCGAAGCACGGGATCAAGGT
GAAATATAATTGCAAGCAGGGGAACTGCGCAACGTGTGAGATCAACATCG
ACGGTCGATATGTGAAAGCCTGTCAGGGGAAGGTTCCATCGTCCCGCCGC
ATTGTCAAGATCAAGGCATGAGTGAAATATAATTGCAAGCAGGGGAACTG
CGCAACGTGTGAGATCAACATCGACGGTCGATATGTGAAAGCCTGTCAGG
GGAAGGTTCCATCGTCCCGCCGCATTGTCAAGATCAAGGCATGA
back to top