mRNA_H-elongata_contig11860.1434.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11860.1434.1
Unique NamemRNA_H-elongata_contig11860.1434.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11860.1434.1 vs. uniprot
Match: D7G8K1_ECTSI (SET domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8K1_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 4.470e-46
Identity = 86/124 (69.35%), Postives = 94/124 (75.81%), Query Frame = 1
Query:    1 NYNCRYDFDVESNGVFRLFPSGANRYPTGTEVLNSYGRRANDNLLLEYGFAMLDNPWDAAEIACCLLPGET---LFERRKARLRASGQRTFRIIRVRRGQWSLDLLRFNRCACLTASELNDLEA 363
            N   +YDFDV  NG FRLFPSG NRYP  +EVLNSYGRRANDNLLL+YGFAMLDN WDAAE+ C L P      L  RRKA LRASGQ T RI+RVRR  W  +LLRF RCACLTA EL++LEA
Sbjct:  217 NVQTKYDFDVGGNGTFRLFPSGNNRYPRNSEVLNSYGRRANDNLLLDYGFAMLDNEWDAAEVICSLPPSHDQSPLDRRRKACLRASGQHTVRILRVRRDVWPEELLRFCRCACLTAPELDNLEA 340          
BLAST of mRNA_H-elongata_contig11860.1434.1 vs. uniprot
Match: A0A6H5JC99_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JC99_9PHAE)

HSP 1 Score: 162 bits (410), Expect = 3.530e-44
Identity = 83/124 (66.94%), Postives = 92/124 (74.19%), Query Frame = 1
Query:    1 NYNCRYDFDVESNGVFRLFPSGANRYPTGTEVLNSYGRRANDNLLLEYGFAMLDNPWDAAEIACCLLPGE---TLFERRKARLRASGQRTFRIIRVRRGQWSLDLLRFNRCACLTASELNDLEA 363
            N   +YDFDVE NG FRLFPSG NRYP  +EVLNSYGRRANDNLLL+YGFAMLDN WD AE+ C L P      L  RRKA L ASGQ T R++RV R  W  +LLRF RCACLTA EL++LEA
Sbjct:  245 NVQTKYDFDVERNGTFRLFPSGNNRYPRNSEVLNSYGRRANDNLLLDYGFAMLDNEWDTAEVTCFLPPSHGQSPLDRRRKACLLASGQHTVRMLRVHRDVWPEELLRFCRCACLTAPELDNLEA 368          
BLAST of mRNA_H-elongata_contig11860.1434.1 vs. uniprot
Match: A0A7S3Y0Q1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0Q1_HETAK)

HSP 1 Score: 107 bits (268), Expect = 2.180e-25
Identity = 52/119 (43.70%), Postives = 74/119 (62.18%), Query Frame = 1
Query:    1 NYNCRYDFDVESNGVFRLFPSGANRYPTGTEVLNSYGRRANDNLLLEYGFAMLDNPWDAAEIACCLLPGETLFERRKARLRASGQRTFRIIRVRRGQWSLDLLRFNRCACLTASELNDL 357
            N   +YD+DV+ NG+FRLFPS +N YP G+EV NSYGRR N+NLL+EYGFA+  N WD+  I   L   +  +  +++ L   G  + R   +   Q+S + L F R  CL+ +EL +L
Sbjct:   22 NVATKYDYDVDGNGLFRLFPSNSNNYPAGSEVFNSYGRRTNENLLMEYGFALPKNEWDSVHIPIKLELDDPNYAAKRSLLLRFGTPSSRTFHIETSQFSFEALMFCRLVCLSDTELQNL 140          
BLAST of mRNA_H-elongata_contig11860.1434.1 vs. uniprot
Match: A0A7S2WBA3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WBA3_9STRA)

HSP 1 Score: 92.0 bits (227), Expect = 2.880e-19
Identity = 50/107 (46.73%), Postives = 62/107 (57.94%), Query Frame = 1
Query:    1 NYNCRYDFDVESNGVFRLFPSGANRYPTGTEVLNSYGRRANDNLLLEYGFAMLDNPWDAAEIACCLLPGETLFERRKARLRASGQRTFRIIRVRRGQWSLDLLRFNR 321
            N   +YDFD E +  FRLFPS  N+Y  G EV NSYGRR NDNLLLEYGFAML N WD   +       + L+ RR+  L  +G    R  ++R  +   DLL + R
Sbjct:  281 NVPTKYDFDSEESHTFRLFPSSQNKYRAGEEVFNSYGRRPNDNLLLEYGFAMLGNEWDHMPVHAPHHKEDQLWPRRRKALARNGVTVVRPFQLRDQELCRDLLVYCR 387          
BLAST of mRNA_H-elongata_contig11860.1434.1 vs. uniprot
Match: K3X8I1_GLOUD (SET domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8I1_GLOUD)

HSP 1 Score: 89.0 bits (219), Expect = 1.070e-18
Identity = 38/62 (61.29%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    1 NYNCRYDFDVESNGVFRLFPSGANRYPTGTEVLNSYGRRANDNLLLEYGFAMLDNPWDAAEI 186
            N   +YDF+V++NG+FRLFPS  N Y  GTEV NSYGRR+N  LLL+YGFA+L+N WD  +I
Sbjct:  194 NVATKYDFNVDNNGMFRLFPSSTNTYAAGTEVFNSYGRRSNFQLLLDYGFALLENEWDYVDI 255          
BLAST of mRNA_H-elongata_contig11860.1434.1 vs. uniprot
Match: A0A2D4CAI0_PYTIN (SET domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CAI0_PYTIN)

HSP 1 Score: 84.0 bits (206), Expect = 1.540e-17
Identity = 36/58 (62.07%), Postives = 42/58 (72.41%), Query Frame = 1
Query:    1 NYNCRYDFDVESNGVFRLFPSGANRYPTGTEVLNSYGRRANDNLLLEYGFAMLDNPWD 174
            N   +YDFDV+ NG+FRL+PS  N Y  G EV NSYGRR N  LLL+YGFA+ DN WD
Sbjct:  148 NVATKYDFDVDGNGMFRLYPSAGNAYAQGMEVFNSYGRRPNFQLLLDYGFALTDNEWD 205          
BLAST of mRNA_H-elongata_contig11860.1434.1 vs. uniprot
Match: A0A3F2RHI4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RHI4_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 2.660e-17
Identity = 37/62 (59.68%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 NYNCRYDFDVESNGVFRLFPSGANRYPTGTEVLNSYGRRANDNLLLEYGFAMLDNPWDAAEI 186
            N   +YDFDV+ NG+FRL+PSGA  Y  G E  NSYGRR+N  LLL+YGFA+ DN WD  +I
Sbjct:  176 NVATKYDFDVDGNGMFRLYPSGATSYVAGAEAFNSYGRRSNFQLLLDYGFALPDNEWDYVDI 237          
BLAST of mRNA_H-elongata_contig11860.1434.1 vs. uniprot
Match: A0A8K1FF70_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FF70_PYTOL)

HSP 1 Score: 85.9 bits (211), Expect = 2.940e-17
Identity = 40/71 (56.34%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 NYNCRYDFDVESNGVFRLFPSGANRYPTGTEVLNSYGRRANDNLLLEYGFAMLDNPWDAAEIACCLLPGET 213
            N   +YDFDV+ NG FRLFPS +N Y  G EV NSYGRR N  LLL+YGFA+ DN W+  E++   LP +T
Sbjct:  203 NVATKYDFDVDGNGSFRLFPSASNSYAKGAEVFNSYGRRPNFQLLLDYGFALEDNEWEYVEVS---LPRDT 270          
BLAST of mRNA_H-elongata_contig11860.1434.1 vs. uniprot
Match: A0A5D6XWK1_9STRA (SET domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XWK1_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 3.230e-17
Identity = 38/62 (61.29%), Postives = 45/62 (72.58%), Query Frame = 1
Query:    1 NYNCRYDFDVESNGVFRLFPSGANRYPTGTEVLNSYGRRANDNLLLEYGFAMLDNPWDAAEI 186
            N   +YDFDV  NG+FRLFPS A  Y  G EV NSYGRR+N +LLL+YGFA+ DN WD  +I
Sbjct:  204 NVATKYDFDVARNGMFRLFPSAATAYAAGAEVFNSYGRRSNFHLLLDYGFALRDNEWDYVDI 265          
BLAST of mRNA_H-elongata_contig11860.1434.1 vs. uniprot
Match: A0A2R5GWH5_9STRA (Histone-lysine N-methyltransferase setd3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GWH5_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 5.130e-17
Identity = 48/108 (44.44%), Postives = 63/108 (58.33%), Query Frame = 1
Query:   40 GVFRLFPSGANRYPTGTEVLNSYGRRANDNLLLEYGFAMLDNPWDAAEIACCLLPGETLFERRKARLRASGQRTFRIIRVRRGQWSLDLLRFNRCACLTASELNDLEA 363
            G F+LFP+G NRY  G E  NSYGRR+N  LLLEYGF + +N WD+ ++   L P    +E + A LR  G   F+  R+ RG+   DLL F R + L A  +  L A
Sbjct:  319 GKFQLFPTGKNRYAKGEEAFNSYGRRSNSFLLLEYGFCLENNEWDSYKLTVRLDPEVVEYEAKCALLRDLGLTRFKSFRLERGKLQEDLLAFMRLSVLDAGGVRALLA 426          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11860.1434.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8K1_ECTSI4.470e-4669.35SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JC99_9PHAE3.530e-4466.94SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S3Y0Q1_HETAK2.180e-2543.70Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S2WBA3_9STRA2.880e-1946.73Hypothetical protein (Fragment) n=2 Tax=Rhizochrom... [more]
K3X8I1_GLOUD1.070e-1861.29SET domain-containing protein n=1 Tax=Globisporang... [more]
A0A2D4CAI0_PYTIN1.540e-1762.07SET domain-containing protein n=1 Tax=Pythium insi... [more]
A0A3F2RHI4_9STRA2.660e-1759.68Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A8K1FF70_PYTOL2.940e-1756.34Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6XWK1_9STRA3.230e-1761.29SET domain-containing protein n=1 Tax=Pythium bras... [more]
A0A2R5GWH5_9STRA5.130e-1744.44Histone-lysine N-methyltransferase setd3 n=1 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11860contigH-elongata_contig11860:644..1285 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score166.8
Seed ortholog evalue6.4e-39
Seed eggNOG ortholog2880.D7G8K1
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K19199
KEGG ReactionR03875,R04866,R04867
KEGG Pathwayko00310,map00310
EggNOG free text desc.peptidyl-lysine monomethylation
EggNOG OGsKOG1337@1,KOG1337@2759
Ec32 ortholog descriptionSET domain and Rubisco LSMT substrate-binding domain protein
Ec32 orthologEc-14_003300.1
EC2.1.1.43
COG Functional cat.I
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size363
Cds size363
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929693.323834-CDS-H-elongata_contig11860:643..9091622929693.323834-CDS-H-elongata_contig11860:643..909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11860 644..909 +
1691679121.28252-CDS-H-elongata_contig11860:643..9091691679121.28252-CDS-H-elongata_contig11860:643..909Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11860 644..909 +
1622929693.3345287-CDS-H-elongata_contig11860:1188..12851622929693.3345287-CDS-H-elongata_contig11860:1188..1285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11860 1189..1285 +
1691679121.2927313-CDS-H-elongata_contig11860:1188..12851691679121.2927313-CDS-H-elongata_contig11860:1188..1285Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11860 1189..1285 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11860.1434.1prot_H-elongata_contig11860.1434.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11860 644..1285 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11860.1434.1

>prot_H-elongata_contig11860.1434.1 ID=prot_H-elongata_contig11860.1434.1|Name=mRNA_H-elongata_contig11860.1434.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=121bp
NYNCRYDFDVESNGVFRLFPSGANRYPTGTEVLNSYGRRANDNLLLEYGF
AMLDNPWDAAEIACCLLPGETLFERRKARLRASGQRTFRIIRVRRGQWSL
DLLRFNRCACLTASELNDLEA
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mRNA from alignment at H-elongata_contig11860:644..1285+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11860.1434.1 ID=mRNA_H-elongata_contig11860.1434.1|Name=mRNA_H-elongata_contig11860.1434.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=642bp|location=Sequence derived from alignment at H-elongata_contig11860:644..1285+ (Himanthalia elongata Himel1 dioecious)
AACTATAACTGCAGATATGATTTTGATGTCGAGAGCAACGGTGTCTTCCG ACTATTTCCTTCGGGAGCGAACCGTTATCCAACGGGTACCGAGGTGCTCA ACAGCTACGGACGACGAGCGAACGATAACCTACTCCTCGAGTACGGGTTC GCGATGCTCGACAACCCTTGGGACGCGGCCGAGATAGCCTGCTGCCTCTT ACCTGGGGAGACGCTATTCGAACGGAGGAAAGCTCGATTGCGTGCCAGCG GTCAGCGGACTTTCCGGTGAGCGAACCCGTCGTGGTTTGCTGTCGCGATA TTCGGGCCGTGGTACTTGATACGTGTTCCGTTCTACCATTCTTATACACC CCCCCAAAAAAACTCATGACAGAGCCTCTTTGTGTTAAATCTATTAACAC AAAAGACGTCGCAAAGAAGTCGCGCTGTGCTGCGACCGATGACGCGACCG ATGCACAGCTCCAGATGAATCGTACAACAAAAGTAATATACTTCTTGCTA CCATCTGTCGACAGCTTTTCGCCCATGCGCCGCTACCCGAACCAGAATAA TACGCGTCCGCCGGGGCCAGTGGTCCTTAGACCTGCTGCGGTTTAACCGC TGTGCGTGTCTGACGGCGTCTGAGCTGAACGATTTGGAGGCT
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Coding sequence (CDS) from alignment at H-elongata_contig11860:644..1285+

>mRNA_H-elongata_contig11860.1434.1 ID=mRNA_H-elongata_contig11860.1434.1|Name=mRNA_H-elongata_contig11860.1434.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=726bp|location=Sequence derived from alignment at H-elongata_contig11860:644..1285+ (Himanthalia elongata Himel1 dioecious)
AACTATAACTGCAGATATGATTTTGATGTCGAGAGCAACGGTGTCTTCCG
ACTATTTCCTTCGGGAGCGAACCGTTATCCAACGGGTACCGAGGTGCTCA
ACAGCTACGGACGACGAGCGAACGATAACCTACTCCTCGAGTACGGGTTC
GCGATGCTCGACAACCCTTGGGACGCGGCCGAGATAGCCTGCTGCCTCTT
ACCTGGGGAGACGCTATTCGAACGGAGGAAAGCTCGATTGCGTGCCAGCG
GTCAGCGGACTTTCCGAACTATAACTGCAGATATGATTTTGATGTCGAGA
GCAACGGTGTCTTCCGACTATTTCCTTCGGGAGCGAACCGTTATCCAACG
GGTACCGAGGTGCTCAACAGCTACGGACGACGAGCGAACGATAACCTACT
CCTCGAGTACGGGTTCGCGATGCTCGACAACCCTTGGGACGCGGCCGAGA
TAGCCTGCTGCCTCTTACCTGGGGAGACGCTATTCGAACGGAGGAAAGCT
CGATTGCGTGCCAGCGGTCAGCGGACTTTCCGAATAATACGCGTCCGCCG
GGGCCAGTGGTCCTTAGACCTGCTGCGGTTTAACCGCTGTGCGTGTCTGA
CGGCGTCTGAGCTGAACGATTTGGAGGCTAATAATACGCGTCCGCCGGGG
CCAGTGGTCCTTAGACCTGCTGCGGTTTAACCGCTGTGCGTGTCTGACGG
CGTCTGAGCTGAACGATTTGGAGGCT
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