mRNA_H-elongata_contig118554.1432.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118554.1432.1
Unique NamemRNA_H-elongata_contig118554.1432.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118554.1432.1 vs. uniprot
Match: A0A177TP70_9BASI (Uncharacterized protein n=1 Tax=Tilletia indica TaxID=43049 RepID=A0A177TP70_9BASI)

HSP 1 Score: 57.4 bits (137), Expect = 1.020e-6
Identity = 35/89 (39.33%), Postives = 51/89 (57.30%), Query Frame = 1 
Query:    1 WVNDSGAIEHMTQDPAGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNNNFANSTRQLALKHVAHVPN-LGQHNLLSTKRLTQ 264
            ++ D+G+  H+  DP+ L DY  A     +E A G L+PVAGYG+LR+    G         ++ LK VAH P+ +G  NL+  KRLT+
Sbjct:  751 FILDTGSSRHIVADPSSLTDYRNAAPETGIECANGGLMPVAGYGNLRVTTQAG--------LKIELKDVAHCPSAIG--NLIGGKRLTK 829
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BLAST of mRNA_H-elongata_contig118554.1432.1 vs. uniprot
Match: A0A2P6P2V5_ROSCH (Uncharacterized protein n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6P2V5_ROSCH)

HSP 1 Score: 50.4 bits (119), Expect = 4.540e-5
Identity = 32/90 (35.56%), Postives = 46/90 (51.11%), Query Frame = 1 
Query:    1 WVNDSGAIEHMTQDPAGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNNNFANSTRQLALKHVAHVPNLGQHNLLSTKRLTQFF 270
            W+ DSGA +HMT +P+ +   TP      V +A G   P+ G G + L            T+ + L  V  VP+L  HNLLS K++T+ F
Sbjct:   23 WIIDSGATDHMTNNPSNIHHLTPVRRSG-VTNANGDSYPITGAGSVTL------------TKSITLDTVLLVPSLS-HNLLSVKQITKQF 98
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118554.1432.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A177TP70_9BASI1.020e-639.33Uncharacterized protein n=1 Tax=Tilletia indica Ta... [more]
A0A2P6P2V5_ROSCH4.540e-535.56Uncharacterized protein n=1 Tax=Rosa chinensis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118554contigH-elongata_contig118554:1161..1607 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size447
Cds size417
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929693.001264-CDS-H-elongata_contig118554:1160..15771622929693.001264-CDS-H-elongata_contig118554:1160..1577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118554 1161..1577 -
1691679121.1526544-CDS-H-elongata_contig118554:1160..15771691679121.1526544-CDS-H-elongata_contig118554:1160..1577Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118554 1161..1577 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929693.011484-UTR-H-elongata_contig118554:1577..16071622929693.011484-UTR-H-elongata_contig118554:1577..1607Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118554 1578..1607 -
1691679121.1650004-UTR-H-elongata_contig118554:1577..16071691679121.1650004-UTR-H-elongata_contig118554:1577..1607Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig118554 1578..1607 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118554.1432.1prot_H-elongata_contig118554.1432.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118554 1161..1577 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118554.1432.1

>prot_H-elongata_contig118554.1432.1 ID=prot_H-elongata_contig118554.1432.1|Name=mRNA_H-elongata_contig118554.1432.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=139bp
MTQDPAGLEDYTPAPAGDRVESAGGTLLPVAGYGHLRLLVDQGNNNFANS
TRQLALKHVAHVPNLGQHNLLSTKRLTQFFDAPMRVYSAAALIRPRRRDM
PLFFRPLRPENGLLEIKVRRHVAAKSRLPKPPTATALAA
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mRNA from alignment at H-elongata_contig118554:1161..1607-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118554.1432.1 ID=mRNA_H-elongata_contig118554.1432.1|Name=mRNA_H-elongata_contig118554.1432.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=447bp|location=Sequence derived from alignment at H-elongata_contig118554:1161..1607- (Himanthalia elongata Himel1 dioecious)
TGGGTGAACGATAGCGGTGCGATAGAGCATATGACACAAGACCCGGCGGG
TCTAGAGGATTACACACCGGCACCCGCAGGAGATCGAGTGGAGAGCGCGG
GCGGTACCCTCCTTCCGGTGGCGGGATATGGACATCTCCGCCTCCTGGTG
GACCAAGGCAACAACAACTTCGCCAACTCGACGCGCCAGCTTGCCCTAAA
GCACGTCGCACATGTGCCGAATCTTGGACAGCATAATCTGCTCTCTACGA
AACGGCTGACGCAGTTTTTCGACGCGCCGATGCGCGTCTACTCAGCGGCT
GCATTGATCCGCCCCCGGCGACGGGACATGCCACTCTTCTTCCGCCCACT
TCGACCAGAAAACGGCCTTTTGGAGATCAAGGTCCGCCGCCACGTCGCCG
CGAAAAGCCGCCTACCCAAACCCCCAACAGCAACAGCGCTCGCGGCA
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Coding sequence (CDS) from alignment at H-elongata_contig118554:1161..1607-

>mRNA_H-elongata_contig118554.1432.1 ID=mRNA_H-elongata_contig118554.1432.1|Name=mRNA_H-elongata_contig118554.1432.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=834bp|location=Sequence derived from alignment at H-elongata_contig118554:1161..1607- (Himanthalia elongata Himel1 dioecious)
ATGACACAAGACCCGGCGGGTCTAGAGGATTACACACCGGCACCCGCAGG
AGATCGAGTGGAGAGCGCGGGCGGTACCCTCCTTCCGGTGGCGGGATATG
GACATCTCCGCCTCCTGGTGGACCAAGGCAACAACAACTTCGCCAACTCG
ACGCGCCAGCTTGCCCTAAAGCACGTCGCACATGTGCCGAATCTTGGACA
GCATAATCTGCTCTCTACGAAACGGCTGACGCAGTTTTTCGACGCGCCGA
TGCGCGTCTACTCAGCGGCTGCATTGATCCGCCCCCGGCGACGGGACATG
CCACTCTTCTTCCGCCCACTTCGACCAGAAAACGGCCTTTTGGAGATCAA
GGTCCGCCGCCACGTCGCCGCGAAAAGCCGCCTACCCAAACCCCCAACAG
CAACAGCGCTCGCGGCAATGACACAAGACCCGGCGGGTCTAGAGGATTAC
ACACCGGCACCCGCAGGAGATCGAGTGGAGAGCGCGGGCGGTACCCTCCT
TCCGGTGGCGGGATATGGACATCTCCGCCTCCTGGTGGACCAAGGCAACA
ACAACTTCGCCAACTCGACGCGCCAGCTTGCCCTAAAGCACGTCGCACAT
GTGCCGAATCTTGGACAGCATAATCTGCTCTCTACGAAACGGCTGACGCA
GTTTTTCGACGCGCCGATGCGCGTCTACTCAGCGGCTGCATTGATCCGCC
CCCGGCGACGGGACATGCCACTCTTCTTCCGCCCACTTCGACCAGAAAAC
GGCCTTTTGGAGATCAAGGTCCGCCGCCACGTCGCCGCGAAAAGCCGCCT
ACCCAAACCCCCAACAGCAACAGCGCTCGCGGCA
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