mRNA_H-elongata_contig118491.1426.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118491.1426.1
Unique NamemRNA_H-elongata_contig118491.1426.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig118491.1426.1 vs. uniprot
Match: D8LIL3_ECTSI (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIL3_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 2.750e-27
Identity = 51/57 (89.47%), Postives = 56/57 (98.25%), Query Frame = 1 
Query:    1 VEGEPVYAHKVLCMRCTYFRAMLTGEMKESRARIITLPDVRKPIFLALLEYLYTDEV 171
            VEG+PV+AHKVLCMRCTYFRAMLTGEMKESRA+ ITLPDVR+PIFLALLEYLYTDE+
Sbjct:  353 VEGKPVHAHKVLCMRCTYFRAMLTGEMKESRAKTITLPDVRRPIFLALLEYLYTDEL 409
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BLAST of mRNA_H-elongata_contig118491.1426.1 vs. uniprot
Match: A0A7S2C711_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C711_9STRA)

HSP 1 Score: 103 bits (256), Expect = 5.050e-26
Identity = 46/57 (80.70%), Postives = 52/57 (91.23%), Query Frame = 1 
Query:    1 VEGEPVYAHKVLCMRCTYFRAMLTGEMKESRARIITLPDVRKPIFLALLEYLYTDEV 171
            VEG P+YAHK+LCMRCTYF+AMLTGEM+ESRA  I LPDVR PIFLA+LEYLYTD+V
Sbjct:   71 VEGRPIYAHKILCMRCTYFKAMLTGEMRESRATEIVLPDVRYPIFLAMLEYLYTDQV 127
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BLAST of mRNA_H-elongata_contig118491.1426.1 vs. uniprot
Match: A0A835Z0K9_9STRA (BTB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z0K9_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.880e-23
Identity = 45/56 (80.36%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:    1 VEGEPVYAHKVLCMRCTYFRAMLTGEMKESRARIITLPDVRKPIFLALLEYLYTDE 168
            VEG+PVYAHK+LCMRCTYFRAMLTG M ESRA+ + L DVR+PIFLALL+YLYTDE
Sbjct:  352 VEGQPVYAHKILCMRCTYFRAMLTGSMVESRAKEVVLEDVRRPIFLALLQYLYTDE 407
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BLAST of mRNA_H-elongata_contig118491.1426.1 vs. uniprot
Match: A0A1W0AAS8_9STRA (BTB domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAS8_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 1.570e-22
Identity = 43/57 (75.44%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    1 VEGEPVYAHKVLCMRCTYFRAMLTGEMKESRARIITLPDVRKPIFLALLEYLYTDEV 171
            VEG P+YAHK+LC+RC+YF+AMLTGEM+ESRAR + +PDVRK IFLA LEYLYTD V
Sbjct:  374 VEGVPIYAHKILCLRCSYFKAMLTGEMRESRAREVEIPDVRKGIFLAFLEYLYTDHV 430
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BLAST of mRNA_H-elongata_contig118491.1426.1 vs. uniprot
Match: A0A7S2BYV7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BYV7_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.720e-22
Identity = 44/56 (78.57%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:    1 VEGEPVYAHKVLCMRCTYFRAMLTGEMKESRARIITLPDVRKPIFLALLEYLYTDE 168
            VE +PVYAHK+LCMRCTYFRAMLTG M E+RA  I L DVR PIFLALLEYLYTD+
Sbjct:   98 VEDQPVYAHKILCMRCTYFRAMLTGGMSETRASEIVLQDVRHPIFLALLEYLYTDQ 153
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BLAST of mRNA_H-elongata_contig118491.1426.1 vs. uniprot
Match: A0A7S2XZ71_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ71_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 4.520e-22
Identity = 43/57 (75.44%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 VEGEPVYAHKVLCMRCTYFRAMLTGEMKESRARIITLPDVRKPIFLALLEYLYTDEV 171
            VE +PVYAHK+LCMRC YF+AM  GEM+ESRAR I + DVR PIFLALLEYLYTDE+
Sbjct:  239 VENKPVYAHKILCMRCPYFKAMFMGEMRESRAREIVIQDVRHPIFLALLEYLYTDEI 295
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BLAST of mRNA_H-elongata_contig118491.1426.1 vs. uniprot
Match: A0A067D091_SAPPC (BTB domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D091_SAPPC)

HSP 1 Score: 96.3 bits (238), Expect = 6.930e-22
Identity = 43/57 (75.44%), Postives = 50/57 (87.72%), Query Frame = 1 
Query:    1 VEGEPVYAHKVLCMRCTYFRAMLTGEMKESRARIITLPDVRKPIFLALLEYLYTDEV 171
            VEG P+YAHK+LC+RC+YF+AMLTGEM ESRAR + +PDVRK IFLA LEYLYTD V
Sbjct:  402 VEGVPIYAHKILCVRCSYFKAMLTGEMLESRAREVVVPDVRKVIFLAFLEYLYTDHV 458
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BLAST of mRNA_H-elongata_contig118491.1426.1 vs. uniprot
Match: A0A8K1CLD1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CLD1_PYTOL)

HSP 1 Score: 92.4 bits (228), Expect = 1.450e-20
Identity = 40/57 (70.18%), Postives = 49/57 (85.96%), Query Frame = 1 
Query:    1 VEGEPVYAHKVLCMRCTYFRAMLTGEMKESRARIITLPDVRKPIFLALLEYLYTDEV 171
            VE  P+YAHK+LCMRC YF+AMLTGEM ESRAR I + D+R+PIFLA LEYLY+D++
Sbjct:  342 VEDMPIYAHKILCMRCGYFKAMLTGEMLESRAREIVITDIRRPIFLAFLEYLYSDDI 398
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BLAST of mRNA_H-elongata_contig118491.1426.1 vs. uniprot
Match: A0A6G0WJC6_9STRA (BTB domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WJC6_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.030e-20
Identity = 41/57 (71.93%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 VEGEPVYAHKVLCMRCTYFRAMLTGEMKESRARIITLPDVRKPIFLALLEYLYTDEV 171
            VEG P+YAHK+LCMRC+YF+AMLT EM ESRAR + + DVR+ IFLA LEYLYTD V
Sbjct:  416 VEGLPIYAHKILCMRCSYFKAMLTSEMLESRAREVVISDVRRSIFLAFLEYLYTDHV 472
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BLAST of mRNA_H-elongata_contig118491.1426.1 vs. uniprot
Match: F0Y4D1_AURAN (BTB domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4D1_AURAN)

HSP 1 Score: 91.3 bits (225), Expect = 3.650e-20
Identity = 44/57 (77.19%), Postives = 48/57 (84.21%), Query Frame = 1 
Query:    1 VEGEPVYAHKVLCMRCTYFRAMLTGEMKESRARIITLPDVRKPIFLALLEYLYTDEV 171
            V+G PV AHKVLCMRC+YFRA+LTGEM ESRA  I + DVR PIFLALLEYLYTD V
Sbjct:  330 VDGLPVRAHKVLCMRCSYFRALLTGEMLESRASEIAINDVRHPIFLALLEYLYTDNV 386
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118491.1426.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIL3_ECTSI2.750e-2789.47BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2C711_9STRA5.050e-2680.70Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835Z0K9_9STRA1.880e-2380.36BTB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A1W0AAS8_9STRA1.570e-2275.44BTB domain-containing protein n=1 Tax=Thraustothec... [more]
A0A7S2BYV7_9STRA1.720e-2278.57Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2XZ71_9STRA4.520e-2275.44Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A067D091_SAPPC6.930e-2275.44BTB domain-containing protein n=3 Tax=Saprolegniac... [more]
A0A8K1CLD1_PYTOL1.450e-2070.18Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A6G0WJC6_9STRA3.030e-2071.93BTB domain-containing protein n=1 Tax=Aphanomyces ... [more]
F0Y4D1_AURAN3.650e-2077.19BTB domain-containing protein n=1 Tax=Aureococcus ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118491contigH-elongata_contig118491:680..850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue8.7e-23
Seed eggNOG ortholog2880.D8LIL3
Preferred namelztr1
KEGG koko:K12115,ko:K12116,ko:K12117
KEGG Pathwayko04712,map04712
GOsGO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0007600,GO:0008150,GO:0015030,GO:0016604,GO:0019233,GO:0031974,GO:0031981,GO:0032501,GO:0042752,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0050789,GO:0050877,GO:0065007,GO:0070013
EggNOG free text desc.Galactose oxidase, central domain
EggNOG OGs2CMFB@1,2QQ74@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04121
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929692.2568774-CDS-H-elongata_contig118491:679..8501622929692.2568774-CDS-H-elongata_contig118491:679..850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118491 680..850 -
1691679120.9244688-CDS-H-elongata_contig118491:679..8501691679120.9244688-CDS-H-elongata_contig118491:679..850Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118491 680..850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118491.1426.1prot_H-elongata_contig118491.1426.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118491 680..850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118491.1426.1

>prot_H-elongata_contig118491.1426.1 ID=prot_H-elongata_contig118491.1426.1|Name=mRNA_H-elongata_contig118491.1426.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=57bp
VEGEPVYAHKVLCMRCTYFRAMLTGEMKESRARIITLPDVRKPIFLALLE
YLYTDEV
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mRNA from alignment at H-elongata_contig118491:680..850-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118491.1426.1 ID=mRNA_H-elongata_contig118491.1426.1|Name=mRNA_H-elongata_contig118491.1426.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=171bp|location=Sequence derived from alignment at H-elongata_contig118491:680..850- (Himanthalia elongata Himel1 dioecious)
GTGGAGGGAGAGCCGGTCTACGCCCACAAGGTGCTCTGCATGCGGTGCAC
GTACTTCAGAGCGATGCTGACGGGGGAAATGAAGGAGAGCCGGGCCAGGA
TAATAACGCTTCCGGACGTTCGGAAACCCATCTTTTTGGCTCTCCTTGAG
TACCTTTATACCGACGAGGTA
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Coding sequence (CDS) from alignment at H-elongata_contig118491:680..850-

>mRNA_H-elongata_contig118491.1426.1 ID=mRNA_H-elongata_contig118491.1426.1|Name=mRNA_H-elongata_contig118491.1426.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=342bp|location=Sequence derived from alignment at H-elongata_contig118491:680..850- (Himanthalia elongata Himel1 dioecious)
GTGGAGGGAGAGCCGGTCTACGCCCACAAGGTGCTCTGCATGCGGTGCAC
GTACTTCAGAGCGATGCTGACGGGGGAAATGAAGGAGAGCCGGGCCAGGA
TAATAACGCTTCCGGACGTTCGGAAACCCATCTTTTTGGCTCTCCTTGAG
TACCTTTATACCGACGAGGTAGTGGAGGGAGAGCCGGTCTACGCCCACAA
GGTGCTCTGCATGCGGTGCACGTACTTCAGAGCGATGCTGACGGGGGAAA
TGAAGGAGAGCCGGGCCAGGATAATAACGCTTCCGGACGTTCGGAAACCC
ATCTTTTTGGCTCTCCTTGAGTACCTTTATACCGACGAGGTA
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