mRNA_H-elongata_contig118476.1425.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118476.1425.1
Unique NamemRNA_H-elongata_contig118476.1425.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig118476.1425.1 vs. uniprot
Match: D7FU30_ECTSI (zf-met2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FU30_ECTSI)

HSP 1 Score: 63.2 bits (152), Expect = 4.410e-12
Identity = 35/42 (83.33%), Postives = 40/42 (95.24%), Query Frame = 1 
Query:    1 MGGGNAQKSATSRARNEAKKAKASKGSQLAVNQAACNVICQV 126
            MGGGNAQKSAT+RARNEAKKAKA KGSQLAVN+AA +++CQV
Sbjct:    1 MGGGNAQKSATARARNEAKKAKAGKGSQLAVNKAAQSIVCQV 42
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118476.1425.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FU30_ECTSI4.410e-1283.33zf-met2 domain-containing protein n=2 Tax=Ectocarp... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118476contigH-elongata_contig118476:141..266 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue2e-08
Seed eggNOG ortholog2880.D7FU30
EggNOG free text desc.Zinc-binding
EggNOG OGs2DZSG@1,2SCN8@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionAt2g23090 like
Ec32 orthologEc-27_001220.1
Exons1
Model size126
Cds size126
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929692.220447-CDS-H-elongata_contig118476:140..2661622929692.220447-CDS-H-elongata_contig118476:140..266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118476 141..266 +
1691679120.9106452-CDS-H-elongata_contig118476:140..2661691679120.9106452-CDS-H-elongata_contig118476:140..266Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118476 141..266 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118476.1425.1prot_H-elongata_contig118476.1425.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118476 141..266 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118476.1425.1

>prot_H-elongata_contig118476.1425.1 ID=prot_H-elongata_contig118476.1425.1|Name=mRNA_H-elongata_contig118476.1425.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
MGGGNAQKSATSRARNEAKKAKASKGSQLAVNQAACNVICQV
back to top

mRNA from alignment at H-elongata_contig118476:141..266+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118476.1425.1 ID=mRNA_H-elongata_contig118476.1425.1|Name=mRNA_H-elongata_contig118476.1425.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=126bp|location=Sequence derived from alignment at H-elongata_contig118476:141..266+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGGAGGAAATGCTCAGAAGTCCGCAACCTCGCGCGCTCGTAACGA
AGCCAAGAAGGCAAAGGCCTCTAAGGGTTCACAGCTCGCCGTCAACCAGG
CTGCGTGCAACGTCATATGCCAGGTG
back to top

Coding sequence (CDS) from alignment at H-elongata_contig118476:141..266+

>mRNA_H-elongata_contig118476.1425.1 ID=mRNA_H-elongata_contig118476.1425.1|Name=mRNA_H-elongata_contig118476.1425.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig118476:141..266+ (Himanthalia elongata Himel1 dioecious)
ATGGGAGGAGGAAATGCTCAGAAGTCCGCAACCTCGCGCGCTCGTAACGA
AGCCAAGAAGGCAAAGGCCTCTAAGGGTTCACAGCTCGCCGTCAACCAGG
CTGCGTGCAACGTCATATGCCAGGTGATGGGAGGAGGAAATGCTCAGAAG
TCCGCAACCTCGCGCGCTCGTAACGAAGCCAAGAAGGCAAAGGCCTCTAA
GGGTTCACAGCTCGCCGTCAACCAGGCTGCGTGCAACGTCATATGCCAGG
TG
back to top