mRNA_H-elongata_contig11846.1423.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11846.1423.1 vs. uniprot
Match: D7FW08_ECTSI (Proteasome subunit alpha type n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FW08_ECTSI) HSP 1 Score: 453 bits (1165), Expect = 2.550e-160 Identity = 229/248 (92.34%), Postives = 240/248 (96.77%), Query Frame = 1
Query: 1 RYDRAITVFSPDGHLFQVEYAIEAVKRGSSVVCVKGKDCVVLGVERRATAKLQDPRTIRKIVKIDSHITLAFAGLTADARVLIDRARVECQSFRLTCEDAPSIEYVARFIARTQQRYTQRGGMRPFGVSSILAGFSQDGQPQIYQTDPAGTYSAWKANAIGGTNSNNMREFLEKNWTNDMDEASAKKLCMKALLEVVDSGAKNMEIAIVRFQKPIEIMTEDKMQAVAAELDAEAEEAKESSPGEVQMT 744
RYDRAITVFSPDGHLFQVEYAIEAVKRGSSVVCVKGKDCVVLGVERRATAKLQDPRTIRKIVKIDSHITLAFAGLTADARVL+D+AR+ECQS+RLTCEDAPSIEYVARFIARTQQRYTQRGGMRPFGVSSILAGFSQDG PQIYQTDPAGTYSAWKANAIGG+NSNNMREFLEKNW NDMDE +AKKLCMKALLEVVDSGAKNMEIAIVRF K E+MTE+ MQAVAAEL+AEAEEAKE+S G+VQMT
Sbjct: 4 RYDRAITVFSPDGHLFQVEYAIEAVKRGSSVVCVKGKDCVVLGVERRATAKLQDPRTIRKIVKIDSHITLAFAGLTADARVLVDKARLECQSYRLTCEDAPSIEYVARFIARTQQRYTQRGGMRPFGVSSILAGFSQDGTPQIYQTDPAGTYSAWKANAIGGSNSNNMREFLEKNWANDMDEGAAKKLCMKALLEVVDSGAKNMEIAIVRFGKANEMMTEEMMQAVAAELEAEAEEAKEASAGDVQMT 251
BLAST of mRNA_H-elongata_contig11846.1423.1 vs. uniprot
Match: A0A6S9E6K7_HETAK (Proteasome subunit alpha type n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9E6K7_HETAK) HSP 1 Score: 376 bits (966), Expect = 5.080e-130 Identity = 182/237 (76.79%), Postives = 213/237 (89.87%), Query Frame = 1
Query: 4 YDRAITVFSPDGHLFQVEYAIEAVKRGSSVVCVKGKDCVVLGVERRATAKLQDPRTIRKIVKIDSHITLAFAGLTADARVLIDRARVECQSFRLTCEDAPSIEYVARFIARTQQRYTQRGGMRPFGVSSILAGFSQDGQPQIYQTDPAGTYSAWKANAIGGTNSNNMREFLEKNWTNDMDEASAKKLCMKALLEVVDSGAKNMEIAIVRFQKPIEIMTEDKMQAVAAELDAEAEEAK 714
YDRAITVFSPDGHLFQVEYA+EAVKRGSSVV ++GKDCV+LGVER++TAKLQD RT+RKI K+D+H+TLAFAGLTADARVL+++AR+ECQS+RLTCEDAPS+EYVARF+ARTQQ+YTQRGGMRPFGVS +LAG DG PQ+YQTDPAGTYSAWK N IGG NS +M+EFLEKNW DMD +AKKL +K LLEVVDSGAKNME+ +VR +P E+MTE+ M AVAAE++AEAEEAK
Sbjct: 3 YDRAITVFSPDGHLFQVEYAMEAVKRGSSVVGIRGKDCVILGVERKSTAKLQDSRTVRKICKVDNHLTLAFAGLTADARVLVNKARLECQSYRLTCEDAPSVEYVARFVARTQQKYTQRGGMRPFGVSVMLAGHGVDGAPQLYQTDPAGTYSAWKGNCIGGKNSKSMQEFLEKNWEEDMDAPAAKKLAIKCLLEVVDSGAKNMEVCVVRRGQPNEMMTEEAMSAVAAEIEAEAEEAK 239
BLAST of mRNA_H-elongata_contig11846.1423.1 vs. uniprot
Match: A0A835Z7L7_9STRA (Proteasome subunit alpha type n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7L7_9STRA) HSP 1 Score: 374 bits (959), Expect = 6.800e-129 Identity = 188/249 (75.50%), Postives = 219/249 (87.95%), Query Frame = 1
Query: 4 YDRAITVFSPDGHLFQVEYAIEAVKRGSSVVCVKGKDCVVLGVERRATAKLQDPRTIRKIVKIDSHITLAFAGLTADARVLIDRARVECQSFRLTCEDAPSIEYVARFIARTQQRYTQRGGMRPFGVSSILAGFSQDGQPQIYQTDPAGTYSAWKANAIGGTNSNNMREFLEKNWTND--MDEASAKKLCMKALLEVVDSGAKNMEIAIVRFQKPIEIMTEDKMQAVAAELDAEAEEAKESSPGEVQMT 744
YDRAITVFSPDGHLFQVEYAIEAVKRGSSVV V+ D +V+GVERRATAKLQDPRTIRKIVK+D+H+TLAFAGLTADARVLID+AR+E QS+RLTCEDAPS+EY+ARFIARTQQ+YTQRGGMRPFGVS +LAGF DGQPQ+YQTDPAGT+SAWKANAIGG +S NMREFLEKN+ + +DEA+A KLC+K LLEVVDSGAKNMEI ++R P+E M++ M AV A+++AEAEEAK++S G T
Sbjct: 5 YDRAITVFSPDGHLFQVEYAIEAVKRGSSVVGVRAADMLVVGVERRATAKLQDPRTIRKIVKVDAHLTLAFAGLTADARVLIDKARLEAQSYRLTCEDAPSLEYMARFIARTQQKYTQRGGMRPFGVSCMLAGFGTDGQPQLYQTDPAGTHSAWKANAIGGKSSKNMREFLEKNYPTEGGLDEAAAVKLCIKTLLEVVDSGAKNMEICLIRRDTPVETMSDTDMAAVVAQIEAEAEEAKKASAGSSMET 253
BLAST of mRNA_H-elongata_contig11846.1423.1 vs. uniprot
Match: W7TRL4_9STRA (Proteasome subunit alpha type n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TRL4_9STRA) HSP 1 Score: 346 bits (888), Expect = 4.350e-118 Identity = 167/241 (69.29%), Postives = 209/241 (86.72%), Query Frame = 1
Query: 1 RYDRAITVFSPDGHLFQVEYAIEAVKRGSSVVCVKGKDCVVLGVERRATAKLQDPRTIRKIVKIDSHITLAFAGLTADARVLIDRARVECQSFRLTCEDAPSIEYVARFIARTQQRYTQRGGMRPFGVSSILAGFSQDGQPQIYQTDPAGTYSAWKANAIGGTNSNNMREFLEKNWTNDMDEASAKKLCMKALLEVVDSGAKNMEIAIVRFQKPIEIMTEDKMQAVAAELDAEAEEAKESS 723
RYDRAITVFSPDGHLFQVEYAIEAVKRGSS V V+GK V+LGVERRATAKLQDPRTI+KI KID H+TLAFAGLTADARVL+++AR+ECQS+RLT EDAP++EYVAR+IARTQQ+YTQRGG+RPFGVS ++AG + DG +YQTDPAGTYSAWKA A+GG NS+NM+E+LEK W +D++E +A +L +K LLEVVDSGAKNME+A++ +P+ ++ E + A++A ++AE EEAK+ +
Sbjct: 4 RYDRAITVFSPDGHLFQVEYAIEAVKRGSSAVGVRGKSSVILGVERRATAKLQDPRTIKKICKIDEHVTLAFAGLTADARVLVNKARLECQSYRLTYEDAPTVEYVARYIARTQQKYTQRGGVRPFGVSCVIAGTNPDGSAVLYQTDPAGTYSAWKATAVGGRNSSNMQEYLEKQWADDLEEENAIRLTVKTLLEVVDSGAKNMEVAVITQGRPMRMLDEATLAALSASIEAEQEEAKKKA 244
BLAST of mRNA_H-elongata_contig11846.1423.1 vs. uniprot
Match: A0A7S2RQS1_9STRA (Proteasome subunit alpha type n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RQS1_9STRA) HSP 1 Score: 342 bits (876), Expect = 3.340e-116 Identity = 166/238 (69.75%), Postives = 199/238 (83.61%), Query Frame = 1
Query: 1 RYDRAITVFSPDGHLFQVEYAIEAVKRGSSVVCVKGKDCVVLGVERRATAKLQDPRTIRKIVKIDSHITLAFAGLTADARVLIDRARVECQSFRLTCEDAPSIEYVARFIARTQQRYTQRGGMRPFGVSSILAGFSQDGQPQIYQTDPAGTYSAWKANAIGGTNSNNMREFLEKNWTNDMDEASAKKLCMKALLEVVDSGAKNMEIAIVRFQKPIEIMTEDKMQAVAAELDAEAEEAK 714
RYDRAITVFSPDG LFQ++YA EAVK+ S+VV V+ D V+LGVER+ AKLQDPRTIRKIVK+D+H TLAFAGL ADARVLI++ R+ECQS+RLTCEDAPS+EY+ARFIARTQQRYTQRGG+RPFGVSSILAGF+ DG PQIYQ DP+GTY WKANAIGG N MREFLEK W + +A A KL +KALLEVVDSG+KNME+ ++R +P M+++ +QAV +++AE EEAK
Sbjct: 3 RYDRAITVFSPDGKLFQIDYAFEAVKKASAVVAVRAADTVILGVERKTIAKLQDPRTIRKIVKLDTHATLAFAGLNADARVLIEKTRIECQSYRLTCEDAPSLEYIARFIARTQQRYTQRGGVRPFGVSSILAGFNTDGAPQIYQIDPSGTYFGWKANAIGGRNFKGMREFLEKEWQEGLSQAEATKLTVKALLEVVDSGSKNMELVVIRRGEPAATMSDESVQAVVDQVEAEMEEAK 240
BLAST of mRNA_H-elongata_contig11846.1423.1 vs. uniprot
Match: A0A7S1FT14_9STRA (Proteasome subunit alpha type n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FT14_9STRA) HSP 1 Score: 338 bits (866), Expect = 7.320e-115 Identity = 165/240 (68.75%), Postives = 203/240 (84.58%), Query Frame = 1
Query: 4 YDRAITVFSPDGHLFQVEYAIEAVKRGSSVVCVKGKDCVVLGVERRATAKLQDPRTIRKIVKIDSHITLAFAGLTADARVLIDRARVECQSFRLTCEDAPSIEYVARFIARTQQRYTQRGGMRPFGVSSILAGFSQDGQPQIYQTDPAGTYSAWKANAIGGTNSNNMREFLEKNWTNDMDEASAKKLCMKALLEVVDSGAKNMEIAIVRFQKPIEIMTEDKMQAVAAELDAEAEEAKESS 723
YDRAITVFSPDGHLFQVEYA+EAV+RGS+ V ++ D V+L VERRATA+LQD RTIRKIV +D H+ LAFAGLTADARVL+++ARVECQS+RLTCEDAPSIEY+AR+IARTQQ+YTQRGG+RPFG++++LAGFSQ G P +YQTDPAGTYS+WKANA+GG N+ +MREFLEKN + M E A KL +KALLEVVDSGAKNMEI++ R + I+ E+ + + E++AEAEE+K S
Sbjct: 3 YDRAITVFSPDGHLFQVEYAMEAVRRGSATVGIRASDAVILAVERRATARLQDSRTIRKIVSVDDHVRLAFAGLTADARVLVNKARVECQSYRLTCEDAPSIEYIARYIARTQQKYTQRGGVRPFGITTLLAGFSQSGSPCLYQTDPAGTYSSWKANAVGGRNAKSMREFLEKNCDDSMSETDAVKLAVKALLEVVDSGAKNMEISVSRKNSSV-ILEEEVVDKIVKEIEAEAEESKTGS 241
BLAST of mRNA_H-elongata_contig11846.1423.1 vs. uniprot
Match: A0A7S3M1D5_9STRA (Proteasome subunit alpha type n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M1D5_9STRA) HSP 1 Score: 337 bits (865), Expect = 1.420e-114 Identity = 163/242 (67.36%), Postives = 207/242 (85.54%), Query Frame = 1
Query: 4 YDRAITVFSPDGHLFQVEYAIEAVKRGSSVVCVKGKDCVVLGVERRATAKLQDPRTIRKIVKIDSHITLAFAGLTADARVLIDRARVECQSFRLTCEDAPSIEYVARFIARTQQRYTQRGGMRPFGVSSILAGFSQDGQPQIYQTDPAGTYSAWKANAIGGTNSNNMREFLEKNWTNDMDEASAKKLCMKALLEVVDSGAKNMEIAIVRFQKPIEIMTEDKMQAVAAELDAEAEEAKESSPG 729
YDRAITVFSPDGHLFQVEYA+EAVKRGS+VV V+G D VVLGVER+A A+LQD RTIRKI K+D ++T+AFAG TADARVLI++AR+E QS+RLTCEDAPSI+Y+AR IA+TQQ YTQRGG+RPFGVSS+++GF+ D PQ+Y TDPAGTYSAWKANAIGG N ++EFLEKNWT + EA A +L +KALLEVVDSG+KNME+A+ R+ +P+ I+ E++++ + A+++ E EEAK+ + G
Sbjct: 3 YDRAITVFSPDGHLFQVEYAMEAVKRGSAVVGVRGADSVVLGVERKAVAQLQDARTIRKIAKLDENLTIAFAGFTADARVLIEKARIEAQSYRLTCEDAPSIDYMARHIAKTQQSYTQRGGVRPFGVSSMISGFNADKSPQLYLTDPAGTYSAWKANAIGGRNEKAVQEFLEKNWTASLAEADAIRLTVKALLEVVDSGSKNMELAVSRYGQPVRILKEEELEVIIADIEREIEEAKKEAAG 244
BLAST of mRNA_H-elongata_contig11846.1423.1 vs. uniprot
Match: A0A7S2F6I3_9STRA (Proteasome subunit alpha type n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F6I3_9STRA) HSP 1 Score: 336 bits (862), Expect = 5.740e-114 Identity = 167/237 (70.46%), Postives = 198/237 (83.54%), Query Frame = 1
Query: 4 YDRAITVFSPDGHLFQVEYAIEAVKRGSSVVCVKGKDCVVLGVERRATAKLQDPRTIRKIVKIDSHITLAFAGLTADARVLIDRARVECQSFRLTCEDAPSIEYVARFIARTQQRYTQRGGMRPFGVSSILAGFSQDGQPQIYQTDPAGTYSAWKANAIGGTNSNNMREFLEKNWTNDMDEASAKKLCMKALLEVVDSGAKNMEIAIVRFQKPIEIMTEDKMQAVAAELDAEAEEAK 714
YDRAITVFSPDG LFQ++YA EAVK+ S+VV V G++ VV+GVER+A AKLQ+ RTIRKIVK+DSH TLAFAGLTADARVLI++AR ECQS+RLTCEDAPS+EY+ARFIA+TQQRYTQRGG+RPFGVSSILAGF DG P IYQ DP+GTY AWKANAIGG N MREFLEK W D++EA A KL +KALLEVVDSG+KNME+ +VR E + ++ + A+ E++AE EEAK
Sbjct: 17 YDRAITVFSPDGKLFQIDYAFEAVKKASAVVAVTGENVVVIGVERKAIAKLQESRTIRKIVKLDSHATLAFAGLTADARVLIEKARTECQSYRLTCEDAPSLEYIARFIAKTQQRYTQRGGVRPFGVSSILAGFHTDGSPSIYQIDPSGTYFAWKANAIGGRNFKPMREFLEKEWVPDLEEAQALKLTVKALLEVVDSGSKNMEVVVVRRGAGPETLDDEALTAIVTEVEAEQEEAK 253
BLAST of mRNA_H-elongata_contig11846.1423.1 vs. uniprot
Match: A0A7S2EX89_TRICV (Proteasome subunit alpha type n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EX89_TRICV) HSP 1 Score: 332 bits (850), Expect = 3.120e-112 Identity = 170/253 (67.19%), Postives = 203/253 (80.24%), Query Frame = 1
Query: 4 YDRAITVFSPDGHLFQVEYAIEAVKRGSSVVCVKGKDCVVLGVERRATAKLQDPRTIRKIVKIDSHITLAFAGLTADARVLIDRARVECQSFRLTCEDAPSIEYVARFIARTQQRYTQRGGMRPFGVSSILAGFS---------QDGQ--PQIYQTDPAGTYSAWKANAIGGTNSNNMREFLEKNWTNDMDEASAKKLCMKALLEVVDSGAKNMEIAIVRFQKPIEIMTEDKMQAVAAELDAEAEEAKESSPG 729
YDRAITVFSPDGHLFQVEYA+EAV+RGS+ V V+GKDCVVL VERRA AKLQDPRTIRKIV +D TLAFAGLTADARVL+++ARVECQS+RLTCEDAPS+EYVAR++ARTQQ+YTQRGG+RPFG++++LAGFS +DG P +YQTDPAGT+S+WKA IGG N+ ++REFLEKN+ + MDE KL ++ALLEVVDSGAKNMEI +VR E M E + AV E++AE EE K S G
Sbjct: 3 YDRAITVFSPDGHLFQVEYAMEAVRRGSTAVGVRGKDCVVLAVERRALAKLQDPRTIRKIVPVDERCTLAFAGLTADARVLVNKARVECQSYRLTCEDAPSVEYVARYLARTQQKYTQRGGVRPFGIATLLAGFSDPVQGKEDEEDGGSGPVLYQTDPAGTHSSWKAQVIGGRNAKSLREFLEKNYEDGMDEGGCVKLSVRALLEVVDSGAKNMEICVVRRGGVRETMEESAVDAVVKEIEAEQEEGKRGSTG 255
BLAST of mRNA_H-elongata_contig11846.1423.1 vs. uniprot
Match: B8BR42_THAPS (Proteasome subunit alpha type n=2 Tax=Thalassiosira TaxID=35127 RepID=B8BR42_THAPS) HSP 1 Score: 329 bits (844), Expect = 1.740e-111 Identity = 161/242 (66.53%), Postives = 197/242 (81.40%), Query Frame = 1
Query: 4 YDRAITVFSPDGHLFQVEYAIEAVKRGSSVVCVKGKDCVVLGVERRATAKLQDPRTIRKIVKIDSHITLAFAGLTADARVLIDRARVECQSFRLTCEDAPSIEYVARFIARTQQRYTQRGGMRPFGVSSILAGFSQDGQPQIYQTDPAGTYSAWKANAIGGTNSNNMREFLEKNWTNDMDEASAKKLCMKALLEVVDSGAKNMEIAIVRFQKPIEIMTEDKMQAVAAELDAEAEEAKESSPG 729
YDRAITVFSPDGHLFQVEYA+EAV+RGS+ V V+GKDCVVL VERRA AKLQDPRTIRKIV +D LAFAGLTADARVLI++ R E QS+RLTCEDAPS+EY+AR+IARTQQ+YTQRGG+RPFG++++LAGFS++G P +YQTDPAGT+S WKA IGG N+ ++REFLEKNW ++E A ++ ++ALLEVVDSGAKNMEI +VR I+ E + + ++AEAEE K S G
Sbjct: 3 YDRAITVFSPDGHLFQVEYAMEAVRRGSTAVGVRGKDCVVLAVERRALAKLQDPRTIRKIVSVDERSVLAFAGLTADARVLINKTRTEAQSYRLTCEDAPSVEYLARYIARTQQKYTQRGGVRPFGIATLLAGFSEEGSPVLYQTDPAGTHSEWKAQVIGGRNAKSLREFLEKNWEEGLEEDKAVRMSVQALLEVVDSGAKNMEICVVRVGGKKTILEEKDVDEIVKSIEAEAEEGKTSGGG 244 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11846.1423.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11846.1423.1 >prot_H-elongata_contig11846.1423.1 ID=prot_H-elongata_contig11846.1423.1|Name=mRNA_H-elongata_contig11846.1423.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=249bp RYDRAITVFSPDGHLFQVEYAIEAVKRGSSVVCVKGKDCVVLGVERRATAback to top mRNA from alignment at H-elongata_contig11846:131..3229+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11846.1423.1 ID=mRNA_H-elongata_contig11846.1423.1|Name=mRNA_H-elongata_contig11846.1423.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3099bp|location=Sequence derived from alignment at H-elongata_contig11846:131..3229+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11846:131..3229+ >mRNA_H-elongata_contig11846.1423.1 ID=mRNA_H-elongata_contig11846.1423.1|Name=mRNA_H-elongata_contig11846.1423.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1494bp|location=Sequence derived from alignment at H-elongata_contig11846:131..3229+ (Himanthalia elongata Himel1 dioecious)back to top |