mRNA_H-elongata_contig118301.1413.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig118301.1413.1
Unique NamemRNA_H-elongata_contig118301.1413.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig118301.1413.1 vs. uniprot
Match: D8LRH6_ECTSI (Ornithine cyclodeaminase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRH6_ECTSI)

HSP 1 Score: 363 bits (932), Expect = 1.710e-123
Identity = 188/240 (78.33%), Postives = 201/240 (83.75%), Query Frame = 1
Query:    1 VSQGLAPGSGIFVVCDATNGAPLAIFQENRFLTDLRTGAAGAVSVKYFAARHHKKVSFIGAGVIAKAMAHGSACVHEFDEGFAYGLNIENTQKFANELEAELGYKVHVCTTAEEAVRNSDVVFTQTPGGNTVLELDWLRPHATIIASGSDQATKNEIPAEVQKASKMVCDLVRQCKQVGELRSAIKANLMKEDDVYAEIGDVVNGDKPGRTGEELILVDLTGTGAQDAAIGQVAWDILSK 720
            V +GL  GSGIFVVCDATNGAPLAIFQENRFLTDLRTGAAGAVSVK+FAARHHKKV F+GAGVIA AMA GS CVHEFDEGFAYGL++  T+++A+E+EAELGYKV                          +ELDWLRPHATIIASGSDQ TKNEIPAEVQKASKMVCDLVRQC+QVGELRSAIKA +M  DDVYAEIGDVVNGDKPGRTGEELILVDLTGTGAQDAAIGQVAWDILSK
Sbjct:  134 VEKGLPAGSGIFVVCDATNGAPLAIFQENRFLTDLRTGAAGAVSVKHFAARHHKKVGFVGAGVIAAAMARGSKCVHEFDEGFAYGLDVVKTKEWADEIEAELGYKV--------------------------VELDWLRPHATIIASGSDQPTKNEIPAEVQKASKMVCDLVRQCEQVGELRSAIKAGVMTRDDVYAEIGDVVNGDKPGRTGEELILVDLTGTGAQDAAIGQVAWDILSK 347          
BLAST of mRNA_H-elongata_contig118301.1413.1 vs. uniprot
Match: A0A7S2RSZ5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RSZ5_9STRA)

HSP 1 Score: 360 bits (925), Expect = 1.040e-121
Identity = 176/241 (73.03%), Postives = 209/241 (86.72%), Query Frame = 1
Query:    1 VSQGLAPGSGIFVVCDATNGAPLAIFQENRFLTDLRTGAAGAVSVKYFAARHHKKVSFIGAGVIAKAMAHGSACVHEFDEGFAYGLNIENTQKFANELEAELGYKVHVCTTAEEAVRNSDVVFTQTPGGNTVLELDWLRPHATIIASGSDQATKNEIPAEVQKASKMVCDLVRQCKQVGELRSAIKANLMKEDDVYAEIGDVVNGDKPGRTGEELILVDLTGTGAQDAAIGQVAWDILSKK 723
            V +GL PGSGIF+VCDATNGAPLAI QENR+LTDLRTGAAGA+SVK+FA+  HKKV+FIG GVIA+AMA  +  +H+FD+GFA+GL+     +FA+ + ++LGY V VC TAEEAVR++DV+FTQT G N VL+LDWL+PHATIIASGSDQ TKNEIP EVQ+ SK+VCDLVRQC +VGELRSAI A +M EDDVYAEIG+VVNG KPGR G+ELILVDLTGTGAQDAAIGQVAW++LS+K
Sbjct:  158 VEKGLPPGSGIFIVCDATNGAPLAIMQENRYLTDLRTGAAGAISVKHFASPKHKKVAFIGTGVIAQAMARATNTLHQFDQGFAFGLDDGMNAQFADTIHSQLGYPVQVCATAEEAVRSADVIFTQTTGANHVLQLDWLQPHATIIASGSDQPTKNEIPPEVQRQSKLVCDLVRQCSRVGELRSAIAAGVMSEDDVYAEIGEVVNGTKPGREGDELILVDLTGTGAQDAAIGQVAWEVLSQK 398          
BLAST of mRNA_H-elongata_contig118301.1413.1 vs. uniprot
Match: A0A7S0H4T2_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H4T2_9EUKA)

HSP 1 Score: 340 bits (873), Expect = 1.720e-114
Identity = 171/238 (71.85%), Postives = 200/238 (84.03%), Query Frame = 1
Query:    1 VSQGLAPGSGIFVVCDATNGAPLAIFQENRFLTDLRTGAAGAVSVKYFAARHHKKVSFIGAGVIAKAMAHGSACVHEFDEGFAYGLNIENTQKFANELEAELGYKVHVCTTAEEAVRNSDVVFTQTPGGNTVLELDWLRPHATIIASGSDQATKNEIPAEVQKASKMVCDLVRQCKQVGELRSAIKANLMKEDDVYAEIGDVVNGDKPGRTGEELILVDLTGTGAQDAAIGQVAWDIL 714
            + +GL PGSGIFVV DATNG PLAIFQENR+LTDLRTGAAGAVSVK+FAA+ H KV F+G G+IA AMA  S+ VH + E   +GL+   TQ+F +E+EAEL +   VC +AEEAV +SDV+FTQTP   TVLEL WL+PHATIIASGSDQ+TKNEIP EV KASKMVCDLVRQC +VGELRSA++A +MKE DVYAEIG+VVNG KPGR G+ELI+VDLTGTGAQDAAIGQVAW++L
Sbjct:  110 LDKGLPPGSGIFVVIDATNGFPLAIFQENRYLTDLRTGAAGAVSVKHFAAKDHTKVCFLGTGMIAGAMARASSEVHGWTEANCFGLDEAQTQRFCDEMEAELKFPFKVCKSAEEAVGSSDVIFTQTPAAQTVLELGWLKPHATIIASGSDQSTKNEIPVEVMKASKMVCDLVRQCSKVGELRSALEAGVMKETDVYAEIGEVVNGTKPGREGDELIVVDLTGTGAQDAAIGQVAWNVL 347          
BLAST of mRNA_H-elongata_contig118301.1413.1 vs. uniprot
Match: A0A6T5N8F9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6T5N8F9_HETAK)

HSP 1 Score: 338 bits (867), Expect = 1.500e-113
Identity = 168/242 (69.42%), Postives = 197/242 (81.40%), Query Frame = 1
Query:    1 VSQGLAPGSGIFVVCDATNGAPLAIFQENRFLTDLRTGAAGAVSVKYFAAR-HHKKVSFIGAGVIAKAMAHGSACVHEFDEGFAYGLNIENTQKFANELEAELGYKVHVCTTAEEAVRNSDVVFTQTPGGNTVLELDWLRPHATIIASGSDQATKNEIPAEVQKASKMVCDLVRQCKQVGELRSAIKANLMKEDDVYAEIGDVVNGDKPGRTGEELILVDLTGTGAQDAAIGQVAWDILSKK 723
            + +GL+PGSGIF+VCDATNGAPL IFQENR+LTDLRTGAAGA+SVKYF A   HK +SFIG G IA++MA G+ACVH F++GF YGL+    ++FA E+EA  GY V VC TAEEAVR+ DVVFTQT G + VLE DWLRPHATIIASGSDQ TK EIP +V   +KMVCDL  QC + GELRSA+K   M E DV+AE+G+VVNG K GR G+EL+LVDLTGTGAQDAAIGQVAW+ILS+K
Sbjct:  112 LEKGLSPGSGIFIVCDATNGAPLGIFQENRYLTDLRTGAAGALSVKYFGASPKHKNISFIGTGAIAESMAKGTACVHNFEQGFCYGLDRAMNERFAAEIEATCGYPVKVCDTAEEAVRSGDVVFTQTVGSSVVLEGDWLRPHATIIASGSDQPTKQEIPVDVMARAKMVCDLTAQCARFGELRSALKEGAMTEADVHAELGEVVNGTKAGREGDELVLVDLTGTGAQDAAIGQVAWEILSQK 353          
BLAST of mRNA_H-elongata_contig118301.1413.1 vs. uniprot
Match: A0A7R9UBH1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UBH1_9STRA)

HSP 1 Score: 318 bits (815), Expect = 1.460e-105
Identity = 158/241 (65.56%), Postives = 191/241 (79.25%), Query Frame = 1
Query:    1 VSQGLAPGSGIFVVCDATNGAPLAIFQENRFLTDLRTGAAGAVSVKYFAARHHKKVSFIGAGVIAKAMAHGSACVHEFDEGFAYGLNIENTQKFANELEAELGYKVHVCTTAEEAVRNSDVVFTQTPGGNTVLELDWLRPHATIIASGSDQATKNEIPAEVQKASKMVCDLVRQCKQVGELRSAIKANLMKEDDVYAEIGDVVNGDKPGRTGEELILVDLTGTGAQDAAIGQVAWDILSKK 723
            V +GL PGSG+F+VCDATNGAPL IFQENR++TDLRTGAAGAV+VK+   R   KV F+G GVI  AMA   A VH+F  G  +GL++  ++ FA ++  ELGY + VC T E+A+ ++DVVFT TP    VLEL  L+P ATIIASGSDQ TK EIP EVQKAS+MVCDLVRQC +VGELRSAI+A +M EDDV+AE+G++VNG KPGR G+ELILVDLTGTGAQDAAIGQVAW++L  K
Sbjct:  120 VDKGLPPGSGVFIVCDATNGAPLGIFQENRYMTDLRTGAAGAVAVKHCVNRDADKVCFVGGGVINLAMATACASVHDFRSGTVFGLDMAQSEAFAKQITDELGYPMTVCDTVEDALADADVVFTATPAAAPVLELGMLKPSATIIASGSDQPTKQEIPVEVQKASRMVCDLVRQCSRVGELRSAIEAGVMTEDDVHAELGEIVNGTKPGRVGDELILVDLTGTGAQDAAIGQVAWEVLGSK 360          
BLAST of mRNA_H-elongata_contig118301.1413.1 vs. uniprot
Match: A0A7S2XZG6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZG6_9STRA)

HSP 1 Score: 302 bits (773), Expect = 8.950e-100
Identity = 145/209 (69.38%), Postives = 176/209 (84.21%), Query Frame = 1
Query:    1 VSQGLAPGSGIFVVCDATNGAPLAIFQENRFLTDLRTGAAGAVSVKYFAARHHKKVSFIGAGVIAKAMAHGSACVHEFDEGFAYGLNIENTQKFANELEAELGYKVHVCTTAEEAVRNSDVVFTQTPGGNTVLELDWLRPHATIIASGSDQATKNEIPAEVQKASKMVCDLVRQCKQVGELRSAIKANLMKEDDVYAEIGDVVNGDKPG 627
            + +GL PGSG+F+VC+A NGAPL IFQENR+LTDLRTGAAGA+SVK F A+ H KV+FIGAGVIA+AMA  S+CVH+F EGFAYGL+   T+ F +E+ +ELG+   VC TAEEAVR++DV+FTQT G   VL+LDWL+PHATIIASGSDQ TKNEIP++V K SKM+CDLVRQC +VGELR+AIK  +M EDDV+AEIGDVV G+KPG
Sbjct:  111 LEKGLPPGSGVFIVCNAVNGAPLGIFQENRYLTDLRTGAAGAISVKNFVAKEHTKVAFIGAGVIAQAMARASSCVHKFTEGFAYGLDTAQTEGFVSEMSSELGFPFKVCETAEEAVRSADVIFTQTTGAAPVLQLDWLKPHATIIASGSDQPTKNEIPSDVMKKSKMICDLVRQCSKVGELRTAIKEGVMTEDDVFAEIGDVVLGNKPG 319          
BLAST of mRNA_H-elongata_contig118301.1413.1 vs. uniprot
Match: C1MM99_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MM99_MICPC)

HSP 1 Score: 298 bits (764), Expect = 4.670e-98
Identity = 143/238 (60.08%), Postives = 184/238 (77.31%), Query Frame = 1
Query:    1 VSQGLAPGSGIFVVCDATNGAPLAIFQENRFLTDLRTGAAGAVSVKYFAARHHKKVSFIGAGVIAKAMAHGSACVHEFDEGFAYGLNIENTQKFANELEAELGYKVHVCTTAEEAVRNSDVVFTQTPGGNTVLELDWLRPHATIIASGSDQATKNEIPAEVQKASKMVCDLVRQCKQVGELRSAIKANLMKEDDVYAEIGDVVNGDKPGRTGEELILVDLTGTGAQDAAIGQVAWDIL 714
            V +GL  GSG+FVVCDATNG P A+  ENR+LTD+RTGAAGAV VK+ A +  K V+FIG GVIA++MA  +A V+ F++G+ Y  NI+    F ++++ ELGY    C +AEEAVRN+DVVFTQTPGG  VL+L WL+PHATIIASGSDQ TKNEIP EV K +K++ D+  QC +VGE+RSA+ A +MKE DV+AE+G+++NG K GR G+ELI+ DLTGTGAQDAAIG    ++L
Sbjct:  106 VEKGLPAGSGVFVVCDATNGGPKAVLHENRYLTDMRTGAAGAVCVKHLAVKGAKSVAFIGTGVIAESMARSTATVYGFEQGYGYSRNIDKATAFCDKMQKELGYDFKACDSAEEAVRNADVVFTQTPGGEWVLDLAWLKPHATIIASGSDQPTKNEIPPEVMKKAKVITDITAQCVRVGEVRSAVAAGVMKESDVHAELGEIINGSKKGRQGKELIVCDLTGTGAQDAAIGSYVMNVL 343          
BLAST of mRNA_H-elongata_contig118301.1413.1 vs. uniprot
Match: C1E6G7_MICCC (Uncharacterized protein n=2 Tax=Micromonas TaxID=38832 RepID=C1E6G7_MICCC)

HSP 1 Score: 297 bits (761), Expect = 2.070e-95
Identity = 145/238 (60.92%), Postives = 183/238 (76.89%), Query Frame = 1
Query:    1 VSQGLAPGSGIFVVCDATNGAPLAIFQENRFLTDLRTGAAGAVSVKYFAARHHKKVSFIGAGVIAKAMAHGSACVHEFDEGFAYGLNIENTQKFANELEAELGYKVHVCTTAEEAVRNSDVVFTQTPGGNTVLELDWLRPHATIIASGSDQATKNEIPAEVQKASKMVCDLVRQCKQVGELRSAIKANLMKEDDVYAEIGDVVNGDKPGRTGEELILVDLTGTGAQDAAIGQVAWDIL 714
            V +GL  GSG+FVVCDATNG P A+  ENR+LTDLRTGAAGAV+VK+ A +  K V+FIG GVIA+AMA  SA VH F++G+ Y  ++     F +++ AELGY    C++AEEAVRN+DVVFTQTPGG  VL+L WL+PHA I+ASGSDQ TKNEIP  V K +++V D+  QC +VGELRSA+ A +MKE DV+A++G+V+NG K GRTG+ELI+ DLTGTGAQDAAIG     +L
Sbjct:  274 VKKGLPAGSGVFVVCDATNGGPKAVLHENRYLTDLRTGAAGAVAVKHLAIKDAKSVAFIGTGVIAEAMARSSATVHGFEQGYGYSRDMTKNSAFCDKMSAELGYAFTPCSSAEEAVRNADVVFTQTPGGEWVLDLKWLKPHALIVASGSDQPTKNEIPPAVMKKARVVTDITAQCLRVGELRSAVAAGVMKETDVHAQLGEVINGTKKGRTGKELIVCDLTGTGAQDAAIGSYVMKVL 511          
BLAST of mRNA_H-elongata_contig118301.1413.1 vs. uniprot
Match: A0A7S0NJ63_MICPS (Hypothetical protein (Fragment) n=2 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0NJ63_MICPS)

HSP 1 Score: 296 bits (759), Expect = 2.510e-93
Identity = 145/238 (60.92%), Postives = 183/238 (76.89%), Query Frame = 1
Query:    1 VSQGLAPGSGIFVVCDATNGAPLAIFQENRFLTDLRTGAAGAVSVKYFAARHHKKVSFIGAGVIAKAMAHGSACVHEFDEGFAYGLNIENTQKFANELEAELGYKVHVCTTAEEAVRNSDVVFTQTPGGNTVLELDWLRPHATIIASGSDQATKNEIPAEVQKASKMVCDLVRQCKQVGELRSAIKANLMKEDDVYAEIGDVVNGDKPGRTGEELILVDLTGTGAQDAAIGQVAWDIL 714
            V +GL  GSG+FVVCDATNG P A+  ENR+LTDLRTGAAGAV+VK+ A +  K V+FIG GVIA+AMA  SA VH F++G+ Y  ++     F +++ AELGY    C++AEEAVRN+DVVFTQTPGG  VL+L WL+PHA I+ASGSDQ TKNEIP  V K +++V D+  QC +VGELRSA++A +MKE DV+A++G+V+NG K GRTG+ELI+ DLTGTGAQDAAIG      L
Sbjct:  274 VKKGLPAGSGVFVVCDATNGGPKAVLHENRYLTDLRTGAAGAVAVKHLAIKDAKSVAFIGTGVIAEAMARSSATVHGFEQGYGYSRDMTKNSAFCDKMSAELGYAFTPCSSAEEAVRNADVVFTQTPGGEWVLDLKWLKPHALIVASGSDQPTKNEIPPAVMKKARVVTDITAQCLRVGELRSAVEAGVMKETDVHAQLGEVINGTKKGRTGKELIVCDLTGTGAQDAAIGSYVMKAL 511          
BLAST of mRNA_H-elongata_contig118301.1413.1 vs. uniprot
Match: C1MMA0_MICPC (Predicted protein (Fragment) n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MMA0_MICPC)

HSP 1 Score: 283 bits (725), Expect = 3.770e-92
Identity = 143/231 (61.90%), Postives = 175/231 (75.76%), Query Frame = 1
Query:    1 VSQGLAPGSGIFVVCDATNGAPLAIFQENRFLTDLRTGAAGAVSVKYFAARHHKKVSFIGAGVIAKAMAHGSACVHEFDEGFAYGLNIENTQKFANELEAELGYKVHVCTTAEEAVRNSDVVFTQTPGGNTVLELDWLRPHATIIASGSDQATKNEIPAEVQKASKMVCDLVRQCKQVGELRSAIKANLMKEDDVYAEIGDVVNGDKPGRTGEELILVDLTGTGAQDAAIG 693
            V +GL  GSG+FVVCDATNG P A+  ENR+LTD+RTGAAGAV VK+ A    K V+FIG GVIA+AMA  +A VH F+E FAY  + + +  F  ++  ELGY  + C TAE+AVRN+DVVFTQTPGG  VLE  WLRPHATIIASGSDQ TKNEIP E+   +K+V D+  QC +VGELRSAI+A LM E +V+AEIG +++G++ GR G E I+ DLTGTGAQDAAIG
Sbjct:  110 VEKGLPAGSGVFVVCDATNGGPKAVLHENRYLTDMRTGAAGAVCVKHLAP-DAKSVAFIGTGVIAEAMAKATATVHGFEEAFAYARSPQKSSSFCKKMTKELGYPFYACATAEDAVRNADVVFTQTPGGEWVLEEQWLRPHATIIASGSDQPTKNEIPPEILMNAKVVTDITAQCSRVGELRSAIEAGLMTEANVHAEIGQIISGEREGRVGNERIVCDLTGTGAQDAAIG 339          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118301.1413.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LRH6_ECTSI1.710e-12378.33Ornithine cyclodeaminase n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S2RSZ5_9STRA1.040e-12173.03Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S0H4T2_9EUKA1.720e-11471.85Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A6T5N8F9_HETAK1.500e-11369.42Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9UBH1_9STRA1.460e-10565.56Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S2XZG6_9STRA8.950e-10069.38Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
C1MM99_MICPC4.670e-9860.08Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
C1E6G7_MICCC2.070e-9560.92Uncharacterized protein n=2 Tax=Micromonas TaxID=3... [more]
A0A7S0NJ63_MICPS2.510e-9360.92Hypothetical protein (Fragment) n=2 Tax=Micromonas... [more]
C1MMA0_MICPC3.770e-9261.90Predicted protein (Fragment) n=1 Tax=Micromonas pu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig118301contigH-elongata_contig118301:124..849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score346.3
Seed ortholog evalue1.2e-92
Seed eggNOG ortholog227086.JGI_V11_49337
KEGG rclassRC00354
KEGG koko:K01750
KEGG ReactionR00671
KEGG Pathwayko00330,ko01110,ko01130,ko01230,map00330,map01110,map01130,map01230
EggNOG free text desc.thiomorpholine-carboxylate dehydrogenase activity
EggNOG OGsCOG2423@1,KOG3007@2759
EC4.3.1.12
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionOrnithine cyclodeaminase
Ec32 orthologEc-18_004550.1
Exons1
Model size726
Cds size726
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929690.7459595-CDS-H-elongata_contig118301:123..8491622929690.7459595-CDS-H-elongata_contig118301:123..849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118301 124..849 +
1691679120.3467464-CDS-H-elongata_contig118301:123..8491691679120.3467464-CDS-H-elongata_contig118301:123..849Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig118301 124..849 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig118301.1413.1prot_H-elongata_contig118301.1413.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig118301 124..849 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig118301.1413.1

>prot_H-elongata_contig118301.1413.1 ID=prot_H-elongata_contig118301.1413.1|Name=mRNA_H-elongata_contig118301.1413.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=242bp
VSQGLAPGSGIFVVCDATNGAPLAIFQENRFLTDLRTGAAGAVSVKYFAA
RHHKKVSFIGAGVIAKAMAHGSACVHEFDEGFAYGLNIENTQKFANELEA
ELGYKVHVCTTAEEAVRNSDVVFTQTPGGNTVLELDWLRPHATIIASGSD
QATKNEIPAEVQKASKMVCDLVRQCKQVGELRSAIKANLMKEDDVYAEIG
DVVNGDKPGRTGEELILVDLTGTGAQDAAIGQVAWDILSKK*
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mRNA from alignment at H-elongata_contig118301:124..849+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig118301.1413.1 ID=mRNA_H-elongata_contig118301.1413.1|Name=mRNA_H-elongata_contig118301.1413.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=726bp|location=Sequence derived from alignment at H-elongata_contig118301:124..849+ (Himanthalia elongata Himel1 dioecious)
GTGTCGCAGGGCCTTGCCCCCGGATCCGGCATTTTTGTCGTTTGCGACGC CACGAACGGCGCCCCACTAGCCATTTTCCAGGAAAATCGGTTCCTCACCG ACCTACGAACGGGCGCGGCGGGTGCTGTTTCCGTGAAATATTTCGCCGCG CGTCACCACAAAAAAGTGAGCTTCATCGGAGCAGGCGTTATTGCCAAGGC CATGGCCCACGGCTCCGCCTGCGTGCACGAATTCGACGAAGGCTTCGCGT ATGGTTTGAACATCGAGAATACGCAAAAGTTCGCGAACGAGCTCGAAGCG GAACTGGGCTACAAGGTGCACGTGTGTACCACCGCGGAGGAAGCCGTACG TAACTCCGACGTTGTCTTCACCCAGACGCCTGGGGGCAACACAGTCTTGG AACTGGACTGGCTGCGACCGCACGCGACGATAATTGCTAGCGGGTCCGAC CAGGCGACGAAGAACGAGATCCCCGCAGAAGTTCAAAAGGCTAGCAAGAT GGTCTGCGACTTGGTACGGCAGTGTAAGCAGGTGGGCGAGCTCCGCAGCG CTATCAAAGCCAACCTCATGAAGGAGGACGACGTCTACGCCGAAATCGGG GATGTGGTGAATGGCGACAAGCCTGGACGCACGGGTGAGGAACTCATCCT CGTCGACCTGACTGGAACTGGCGCTCAGGACGCCGCCATCGGGCAGGTCG CGTGGGACATCCTCTCCAAGAAATGA
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Coding sequence (CDS) from alignment at H-elongata_contig118301:124..849+

>mRNA_H-elongata_contig118301.1413.1 ID=mRNA_H-elongata_contig118301.1413.1|Name=mRNA_H-elongata_contig118301.1413.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1452bp|location=Sequence derived from alignment at H-elongata_contig118301:124..849+ (Himanthalia elongata Himel1 dioecious)
GTGTCGCAGGGCCTTGCCCCCGGATCCGGCATTTTTGTCGTTTGCGACGC
CACGAACGGCGCCCCACTAGCCATTTTCCAGGAAAATCGGTTCCTCACCG
ACCTACGAACGGGCGCGGCGGGTGCTGTTTCCGTGAAATATTTCGCCGCG
CGTCACCACAAAAAAGTGAGCTTCATCGGAGCAGGCGTTATTGCCAAGGC
CATGGCCCACGGCTCCGCCTGCGTGCACGAATTCGACGAAGGCTTCGCGT
ATGGTTTGAACATCGAGAATACGCAAAAGTTCGCGAACGAGCTCGAAGCG
GAACTGGGCTACAAGGTGCACGTGTGTACCACCGCGGAGGAAGCCGTACG
TAACTCCGACGTTGTCTTCACCCAGACGCCTGGGGGCAACACAGTCTTGG
AACTGGACTGGCTGCGACCGCACGCGACGATAATTGCTAGCGGGTCCGAC
CAGGCGACGAAGAACGAGATCCCCGCAGAAGTTCAAAAGGCTAGCAAGAT
GGTCTGCGACTTGGTACGGCAGTGTAAGCAGGTGGGCGAGCTCCGCAGCG
CTATCAAAGCCAACCTCATGAAGGAGGACGACGTCTACGCCGAAATCGGG
GATGTGGTGAATGGCGACAAGCCTGGACGCACGGGTGAGGAACTCATCCT
CGTCGACCTGACTGGAACTGGCGCTCAGGACGCCGCCATCGGGCAGGTCG
CGTGGGACATCCTCTCCAAGAAATGAGTGTCGCAGGGCCTTGCCCCCGGA
TCCGGCATTTTTGTCGTTTGCGACGCCACGAACGGCGCCCCACTAGCCAT
TTTCCAGGAAAATCGGTTCCTCACCGACCTACGAACGGGCGCGGCGGGTG
CTGTTTCCGTGAAATATTTCGCCGCGCGTCACCACAAAAAAGTGAGCTTC
ATCGGAGCAGGCGTTATTGCCAAGGCCATGGCCCACGGCTCCGCCTGCGT
GCACGAATTCGACGAAGGCTTCGCGTATGGTTTGAACATCGAGAATACGC
AAAAGTTCGCGAACGAGCTCGAAGCGGAACTGGGCTACAAGGTGCACGTG
TGTACCACCGCGGAGGAAGCCGTACGTAACTCCGACGTTGTCTTCACCCA
GACGCCTGGGGGCAACACAGTCTTGGAACTGGACTGGCTGCGACCGCACG
CGACGATAATTGCTAGCGGGTCCGACCAGGCGACGAAGAACGAGATCCCC
GCAGAAGTTCAAAAGGCTAGCAAGATGGTCTGCGACTTGGTACGGCAGTG
TAAGCAGGTGGGCGAGCTCCGCAGCGCTATCAAAGCCAACCTCATGAAGG
AGGACGACGTCTACGCCGAAATCGGGGATGTGGTGAATGGCGACAAGCCT
GGACGCACGGGTGAGGAACTCATCCTCGTCGACCTGACTGGAACTGGCGC
TCAGGACGCCGCCATCGGGCAGGTCGCGTGGGACATCCTCTCCAAGAAAT
GA
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