mRNA_H-elongata_contig118217.1406.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A6D2JNC7_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JNC7_9BRAS) HSP 1 Score: 90.9 bits (224), Expect = 1.160e-20 Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 106 PRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDG-KVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 447
PR+ QA +SP W +W A K E ++ N + + +P VVG+K LY K G G +++++KCRLVAQGF Q EGV Y E +SP S R++LS RD EL D +
Sbjct: 4 PRSMAQARKSPNWKEWDNASKEEWSSLMKNHTWDLIDKPDGARVVGSKWLYTIKSGIPGVELKRFKCRLVAQGFSQTEGVDYNEIFSPVVKHVSIRIMLSAVVNRDYELEQMDVK 118
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR) HSP 1 Score: 95.9 bits (237), Expect = 3.730e-20 Identity = 53/139 (38.13%), Postives = 83/139 (59.71%), Query Frame = 1
Query: 31 ADVEDSLACDGGGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 447
A+V D + G + A +A++ + +P++ +AM P W+ A E+ V +Y +V RP+D+ VVG K ++ K G DG++EKYK R+VA+GF Q+EGV YT+ ++P AS R LL+ AA D E+ D +
Sbjct: 262 AEVRDGV----GAEHAKNASI-LDDPQSYEEAMSRPDAERWKAACAEELLTFVKAELYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVK 395
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 95.9 bits (237), Expect = 3.960e-20 Identity = 46/115 (40.00%), Postives = 71/115 (61.74%), Query Frame = 1
Query: 103 EPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 447
+P + AM +WRKA + E+ V+++V RP+D+ ++G+K ++ K G DG+VEKYK RLVAQGF Q+EG+ Y E ++P + S R+LL+ AA D E+ D +
Sbjct: 994 DPLSYVDAMSQEDAAEWRKACEAELEMFKQLGVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVK 1108
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A6D2JI50_9BRAS (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JI50_9BRAS) HSP 1 Score: 90.9 bits (224), Expect = 3.530e-19 Identity = 48/115 (41.74%), Postives = 66/115 (57.39%), Query Frame = 1
Query: 106 PRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDG-KVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 447
PR+ QA +SP W +W A K E ++ N + + +P VVG+K LY K G G +++++KCRLVAQGF Q EGV Y E +SP S R++LS RD EL D +
Sbjct: 4 PRSMAQARKSPNWKEWDNASKEEWSSLMKNHTWDLIDKPDGARVVGSKWLYTIKSGIPGVELKRFKCRLVAQGFSQTEGVDYNEIFSPVVKHVSIRIMLSAVVNRDYELEQMDVK 118
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A1V9YIL7_9STRA (RNA-dependent DNA polymerase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YIL7_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 1.200e-18 Identity = 54/144 (37.50%), Postives = 79/144 (54.86%), Query Frame = 1
Query: 16 PAIEEADVEDSL--ACDGGGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFD 441
PA+ +D L A +G Q M T + EPRN +A+ P +W+ A + E+ ++ N ++ VA+P D +VG K +Y K +G+VE++K RLVAQGF Q GV +TE +SP S R+LL A D + H D
Sbjct: 1212 PALRRSDRLQHLVPAAEGDAQAMMVTT--VNEPRNPSEALNGPQAKEWQTAMQSEIDNLIQNGTWELVAKPTDTNIVGHKWVYKVKFDSNGEVERFKARLVAQGFSQRYGVDFTETFSPVIRQPSVRILLVIATHLDVPVLHLD 1353
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A7S3Y1L1_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1L1_HETAK) HSP 1 Score: 90.1 bits (222), Expect = 2.170e-18 Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 1
Query: 64 GGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFD 441
G Q+ + T Q P N A SP W WR+A E ++ + V++ V +P +VG + + +K DG + KYK RL AQG+ QIEGV YT +SP S+AS R +L+ AA+ D E+ D
Sbjct: 217 GHQVCLLGTHSEQNPWNLAHAQRSPDWMRWREAVADEYDSLLRHNVWELVDKPSGANIVGCRWILAKKYDADGNLSKYKARLCAQGYSQIEGVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMD 342
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A7S3Y1P1_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P1_HETAK) HSP 1 Score: 90.1 bits (222), Expect = 3.990e-18 Identity = 49/126 (38.89%), Postives = 70/126 (55.56%), Query Frame = 1
Query: 64 GGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFD 441
G Q+ + T Q P N A SP W WR+A E ++ + V++ V +P +VG + + +K DG + KYK RL AQG+ QIEGV YT +SP S+AS R +L+ AA+ D E+ D
Sbjct: 470 GHQVCLLGTHSEQNPWNLAHAQRSPDWMRWREAVADEYDSLLRHNVWELVDKPSGANIVGCRWILAKKYDADGNLSKYKARLCAQGYSQIEGVDYTNTFSPVVSSASLRTVLTIAASEDMEIHCMD 595
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A1V9YH81_9STRA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YH81_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 4.140e-18 Identity = 53/134 (39.55%), Postives = 74/134 (55.22%), Query Frame = 1
Query: 40 EDSLACDGGGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFD 441
E A G Q+ M T I+EPRN R+A+ P +W A + E+ ++ N ++ VA+P +VG K +Y K G+VE++K RLVAQGF Q GV +TE +SP S R+LL AA D + H D
Sbjct: 1097 EHMTATGGEAQVVMATT--IKEPRNPREALAGPQAKEWETAMQAEIDNLIQNGTWELVAKPVGVNIVGHKWVYKIKFDNVGEVERFKARLVAQGFSQRYGVDFTETFSPVIRQPSVRVLLVLAAILDVPVLHLD 1228
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A6S7GWB8_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GWB8_PARCT) HSP 1 Score: 89.7 bits (221), Expect = 5.200e-18 Identity = 47/120 (39.17%), Postives = 67/120 (55.83%), Query Frame = 1
Query: 88 TLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 447
T DI EPRN +A + W+KA E +++N ++ V P DK +VG++ ++ K DG VEK+K RLVAQG+ Q EG+ Y E +SP S R LL+ A D E+ D +
Sbjct: 547 TADINEPRNISEAWSNEYNTQWKKATDSEFNALMENGTWELVPPPDDKNIVGSRWVFKVKRKADGSVEKFKARLVAQGYSQTEGIDYNEVFSPVVRNTSIRSLLALANILDWEIHQMDVK 666
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Match: A0A2R6NZJ8_9APHY (Integrase catalytic domain-containing protein n=1 Tax=Hermanssonia centrifuga TaxID=98765 RepID=A0A2R6NZJ8_9APHY) HSP 1 Score: 89.7 bits (221), Expect = 5.560e-18 Identity = 51/132 (38.64%), Postives = 74/132 (56.06%), Query Frame = 1
Query: 52 ACDGGGQMAMHATLDIQEPRNRRQAMESPGWNDWRKAEKIEMRGMVDNCVYKQVARPKDKLVVGTKMLYNRKVGQDGKVEKYKCRLVAQGFWQIEGVHYTEKYSPTPSTASTRMLLSTAAARDGELRHFDAE 447
A G + A A+LD + P ++AM P + W+ AE E+ V ++ +V +PK + +V K +Y K G DG+V KYK RLVA+GF QIEGV Y E ++P S R LL+ AA + E+ D +
Sbjct: 952 AGQSGDEHARKASLD-EPPLTHKEAMARPDASQWKLAEIAEIEAFVKAKLFTEVNKPKGRRLVDCKWVYTIKRGPDGEVIKYKARLVARGFTQIEGVDYNETFAPVSKFTSIRSLLALAAVHNLEIHQMDVK 1082 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig118217.1406.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig118217.1406.1 >prot_H-elongata_contig118217.1406.1 ID=prot_H-elongata_contig118217.1406.1|Name=mRNA_H-elongata_contig118217.1406.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=150bp MHCFLPAIEEADVEDSLACDGGGQMAMHATLDIQEPRNRRQAMESPGWNDback to top mRNA from alignment at H-elongata_contig118217:44..493- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig118217.1406.1 ID=mRNA_H-elongata_contig118217.1406.1|Name=mRNA_H-elongata_contig118217.1406.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=450bp|location=Sequence derived from alignment at H-elongata_contig118217:44..493- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig118217:44..493- >mRNA_H-elongata_contig118217.1406.1 ID=mRNA_H-elongata_contig118217.1406.1|Name=mRNA_H-elongata_contig118217.1406.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=900bp|location=Sequence derived from alignment at H-elongata_contig118217:44..493- (Himanthalia elongata Himel1 dioecious)back to top |