mRNA_H-elongata_contig11800.1395.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11800.1395.1
Unique NamemRNA_H-elongata_contig11800.1395.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
[Close]
BLAST of mRNA_H-elongata_contig11800.1395.1 vs. uniprot
Match: A0A6H5KD03_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD03_9PHAE)

HSP 1 Score: 209 bits (532), Expect = 1.770e-58
Identity = 98/121 (80.99%), Postives = 107/121 (88.43%), Query Frame = 1 
Query:  343 GYALSSFEQINKPRPCWEVAAEVVAKGASMPKKRLVPLLRELCIRIGDNAICDGAFFGALLEILRSAKDGDWDGKAVRLVHFFVRGMITVQGDTEGRALGSSWEGRSITLAQILQAVECFR 705
            GYA+SS+E +N+PR  W VAAEVVAKGA+MPKKRLVPLLRELCIRIGD  +CDGAFFGALL IL SAK+GDWDGKAVRLVHFFVRGM+TVQGDTEGR LGS WEGR IT  QIL A+ECFR
Sbjct:   76 GYAISSYELVNRPRAYWTVAAEVVAKGATMPKKRLVPLLRELCIRIGDYTVCDGAFFGALLVILGSAKEGDWDGKAVRLVHFFVRGMVTVQGDTEGRVLGSHWEGRGITQRQILDAIECFR 196
[Close]
BLAST of mRNA_H-elongata_contig11800.1395.1 vs. uniprot
Match: D7FJG9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJG9_ECTSI)

HSP 1 Score: 166 bits (421), Expect = 1.460e-43
Identity = 77/92 (83.70%), Postives = 83/92 (90.22%), Query Frame = 1 
Query:  430 MPKKRLVPLLRELCIRIGDNAICDGAFFGALLEILRSAKDGDWDGKAVRLVHFFVRGMITVQGDTEGRALGSSWEGRSITLAQILQAVECFR 705
            MPKKRLVPLLRELCIRIGD  +CDGAFFGALL ILRSAK+GDWDGKAVRLVHFFVRGM+TVQGDTEGR LGS WEGR I+  QI+ A+ECFR
Sbjct:    1 MPKKRLVPLLRELCIRIGDYTVCDGAFFGALLVILRSAKEGDWDGKAVRLVHFFVRGMVTVQGDTEGRVLGSHWEGRGISPRQIIDAIECFR 92
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11800.1395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KD03_9PHAE1.770e-5880.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJG9_ECTSI1.460e-4383.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11800contigH-elongata_contig11800:3988..8189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size708
Cds size687
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11800.1395.1prot_H-elongata_contig11800.1395.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11800 3988..8168 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929688.593913-CDS-H-elongata_contig11800:3987..41491622929688.593913-CDS-H-elongata_contig11800:3987..4149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11800 3988..4149 -
1691679119.4343624-CDS-H-elongata_contig11800:3987..41491691679119.4343624-CDS-H-elongata_contig11800:3987..4149Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11800 3988..4149 -
1622929688.6036484-CDS-H-elongata_contig11800:4616..46971622929688.6036484-CDS-H-elongata_contig11800:4616..4697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11800 4617..4697 -
1691679119.4434755-CDS-H-elongata_contig11800:4616..46971691679119.4434755-CDS-H-elongata_contig11800:4616..4697Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11800 4617..4697 -
1622929688.616019-CDS-H-elongata_contig11800:5390..54961622929688.616019-CDS-H-elongata_contig11800:5390..5496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11800 5391..5496 -
1691679119.4529252-CDS-H-elongata_contig11800:5390..54961691679119.4529252-CDS-H-elongata_contig11800:5390..5496Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11800 5391..5496 -
1622929688.6260324-CDS-H-elongata_contig11800:7830..81681622929688.6260324-CDS-H-elongata_contig11800:7830..8168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11800 7831..8168 -
1691679119.4619758-CDS-H-elongata_contig11800:7830..81681691679119.4619758-CDS-H-elongata_contig11800:7830..8168Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11800 7831..8168 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929688.637524-UTR-H-elongata_contig11800:8168..81891622929688.637524-UTR-H-elongata_contig11800:8168..8189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11800 8169..8189 -
1691679119.4696789-UTR-H-elongata_contig11800:8168..81891691679119.4696789-UTR-H-elongata_contig11800:8168..8189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11800 8169..8189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11800.1395.1

>prot_H-elongata_contig11800.1395.1 ID=prot_H-elongata_contig11800.1395.1|Name=mRNA_H-elongata_contig11800.1395.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=229bp
MPNPPNISSERSKSKHRPPPSPATAQSRRSLVGGGGWGRVRALGSFPSGL
TRSPSSSDLEGSHGGPFKHSLQVVGGSLTLRKLGGNANGNGEGGGGADDD
AKNGGRYGYALSSFEQINKPRPCWEVAAEVVAKGASMPKKRLVPLLRELC
IRIGDNAICDGAFFGALLEILRSAKDGDWDGKAVRLVHFFVRGMITVQGD
TEGRALGSSWEGRSITLAQILQAVECFR*
back to top

mRNA from alignment at H-elongata_contig11800:3988..8189-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11800.1395.1 ID=mRNA_H-elongata_contig11800.1395.1|Name=mRNA_H-elongata_contig11800.1395.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=4202bp|location=Sequence derived from alignment at H-elongata_contig11800:3988..8189- (Himanthalia elongata Himel1 dioecious)
CGCACACGATAGTAGGACAGCATGCCCAACCCTCCCAACATTTCCTCCGA
GCGTTCCAAGTCGAAGCACCGACCTCCTCCATCCCCAGCAACTGCACAGT
CTCGAAGAAGTCTCGTTGGAGGAGGAGGCTGGGGTCGCGTTAGGGCGCTG
GGTTCATTCCCCAGCGGGTTGACTCGCAGTCCTAGCAGCAGCGACCTCGA
GGGCAGCCATGGCGGTCCTTTCAAGCATTCCTTGCAGGTGGTGGGTGGAT
CGTTGACGTTGAGAAAACTTGGAGGGAATGCTAATGGTAATGGTGAAGGT
GGAGGTGGAGCCGACGATGATGCGAAAAATGGCGGGCGGTATGGCTACGC
GCTGAGCAGGTAAATGAAATAAGTAAATTGGGATGCCAAGCTATTCTCTT
CGTTACTATACATCGCGTAAATGTATGTGACTGTATCGATAGCACATGTC
CACTAGACTATATAGTGGGTGTGGAAAAGAGAGGCGCATAATAATTGGTC
CATGGGGTTACCTGAATAGGCTACACCTATTACTCGAGATACCTTGAGGA
CTGCTGGCTCAGTGCTGGGGGACCCTCGTTGGTAAACGCCATCGGTATGC
AATTGCGTGACCTGATGACATCGGGATTGGCCCGATGACGGTTGACGGTA
GAGATGGACGTCGTCGCAAAAAACGAAAGGATCAAGAGGATCCCGGGAGT
TCGCACCAGATTCAGCCTGGGTTGAGAGAATAACAGGCTAACGCAGGACG
GGACTCTCAGGCGCGAACGGGGCCAGGGAAAATTAAAAGCAGTAGGCAAC
CAAATCCGGTCGATCTTTACTCTGCTATTTTTTTATTGATATTTTTTTTA
ATTGATTCCTTCATTAGCTCTTTTCCGAAAAATCTAGAGCCCGTGGTCAC
TAAAGTGCTGGAACCAAACACGAAAAGTAGAAAAGGAAAGCAAAGGGGCA
CGCAAGACCGAAAGAGTACTGTACACCTAATTTCCTACGAAGTTGGTATG
GGTTCAAACTGAACTATACATCCAAGGTATCCATTCGACTACAGCATCAC
GCTCCCCCCCGTTCCCACAACCACCAAATAAATGGTTGCTGACTACAGCA
GAGTTGTTGTCTGGAGTGCTGCCCGCACCGTACCAAAACACGGTAGTCGT
GGAAAATGAATGAGCACAGCTACTATCTGGAGTGCTGTCAAAATGACGAC
CAGTGGACACGCAGTGAAAAAGGAACAAACAACAAAAGCCACCAGAGTCA
ACAATCACCCAAGTCTTTTCTCAAACCGTCTGTGGCAGGCACAGCGCGAA
TAGCGATACTGATCAGGTGTATTGTTCCACAATGAATGATAGGTTCTTAC
TGTACACTGTACAGTCAAGCAATAAAAATGAAGGCCCCGAGTGTGCGTAG
ATATTTCTGCCGCGTCTCTCTACAAAGCGAGTGACGACGTAATGGTAATC
TCGCAGACCCGCCCAAAAAATCCAGAAAAAAAAAACGAAATAATTTGTCA
AGGCATTGTGCGTCCGTCTCGATGGTAATGTTGTCCTTCACCGCCACTCT
CGACCCGCTCCATACGCACACGCTCTCGTTGCTGGTCCTTCCCAGGAAGT
TCCTTGTTTCTCCTTCGCTGCACTTTATATGAAAATGAGAAAAATATCGC
GCTGGAAGGTTGCAACCAATTCCCGACGAGCTCGTCGCAGCCCGTCTCCC
TCCTCTTGTGGCGGCGAACCCGGCCTCTAGACGAAATACAACTCCCTTCA
CGAAATCCTAGAGCAATACATCGTTTTGTAGCATTTGGTGGTGCCTGCCT
CCGCGCACAAATGAGTAGATGTATATTGCTGTACTACCGCAGTGCCAAAA
AGCTCGCGAGTCTGCTCATTTGTACCTGACGCACCACATACGACCCAACT
CTACCACTACACACGGGCCTTGCGGTCGGGCGTGCAGCAGCAAGAATGAA
TCGCTCCTCGAATTTGAGTCCAGCCTTACTCTGCTAGAAAGACCCTCCCC
ACTCGCTATGGTTCATGACAGAGCAGACCTTGCCGAGGCAGCGAGGGGAA
CGAATACAGCCTGTTGATTTCGACAACACAGATGGTGCAGTGTTTTCGAC
CTCATCGAAGACAGTTGAGCACCCTCACGCGCGCCCAGTCGGCTAGCTAC
GGTCCTCGGCTGCAAATCGGAGAGGGCGAACTCACAATCTCGTGATTTCC
CCCATCTTGAACGCTGTTCTCTCGCTCATAATTGATATGGGCCTCAGAGC
TGTCGTTGCGGTGTTGCAAAATGCCTGCATAATGCCTCTTGTTTGCTTGC
CAGATACATTATGCGCCTCCCCGAACCTTGGATATTCTACTTTTTTTTTC
CCTGTAACAAACAGACGCTACTGTTTAGTTCTAGGCTAGGCTGTTCGTAT
CGCGGTCTTTCCTTCGAAAGGATGCAGCAGCAGTCGGGCTTGTTCTGGCC
ACTTCTGATCCTGATGCTGCCTCGAGAAGAAGCCATGTGTTCAGTCGAAT
AGAACGATGTTAGCAACAGCCGTACCATCGCTGAAGCCGACGAATATGTC
TGCCGGTAACCCAGAGCCTGATACCCAGACACAACCTTATATCGCGTTCC
AGCTGCTTTCTTTGGGGACACTCGCGTGCCGCCCCGCCATGCCCGCACGT
TACTCGCCGCTTGTCGTTCTGCCCGATTGCCGCCGCAAAACAGCTTCGAG
CAGATTAACAAACCGAGGCCTTGCTGGGAAGTGGCCGCAGAAGTGGTGGC
AAAGGGGGCGTCAATGCCTAAGAAGCGCCTGGTGCCCCTGCTGAGAGAAG
TGAGTGTGTGAGGCACCGCACCAGAGCTCGTTGTTCAATCATAAAGTTCC
CGGATGTATTACACGCTTGTGTACCTTCGACCACACACGAACGCGCTGAT
CTACAAACCCCACGACGCAAGACCCTCCCGCACCGCGAGAAGATGTGTAC
CAGTAACGTACGACTCGGTCAAGATTACCGTCGAGTTTTGTCACTGGTCC
AAACCATGTTGGGGAGGGGGGAAGGGGGAGTCGTCCGGGAAGGGTTGCAC
GGTCTCCTGTCCAAAAATCAAGGCGGCTCGAGGTTTTCTACTAGAGGCGA
TGGCTTCATCTTAATAACTTTGCTATTAATAATATCGACCTAGATGTTTA
GTGCTATATATCTACGACTGTCCAGCAACTCTTTTGGGGGGACAAGTCCT
ATTTCTTGACGGGCAACTCAACGTCGGCGTTAACCGTTTTACCTTTCCTA
CAGCATGCTGAACGAAGAGTGCATGAGGCTCAAGGTCGCTAGAGCATCAC
TCCCCGACGAGCTGCGCACCACCGTCACTCCTAGTCGGTGACCCGCAGAG
GGTGGTGCCTCGTGCAAGAAAATTGTCAAGGCAGTTCGCGTTCGCGTTGT
TGCACTTTTATTTTTTAAATATAATTAGTATACACTTGACTTGTTCTTGT
ACATCGTGCGCGACCCTCGATCCCTCTCTCTTGTGCACCCAGCTCTGCAT
TCGAATTGGTGACAACGCCATCTGCGACGGCGCGTTCTTCGGAGCTCTCC
TGGAAATCCTGCGCTCGGCGAAGGTATCACACTCTTCAATTTATGGTGGC
GACGCCGCCAGCGCGTTCGCGGAGACCTCGTGTACTTGCAGACATCAGCA
ATACGTTGATCTCATTCCTAAACGTGGTTTGGGATAGGGATGATCATGCC
GAACGATATTATCGATGGCATATATATATATAGATTATTTAATATATATA
TTACAATATGGAGCTTCACCTCTAGGTACAACGTCGCCTCTAGGGGGAGA
GTGCTCGAAACTATACAAGCGTGTGGAGGAGGAAAGCACGTGCTTTCACA
ACAGTTGTTAATGTATAGATAGATATATATTAATAGATAGATCGGGAAAC
GTTCGTGGAAGACTAATTGGAGGGCTTGAGAGCATCTTGAGGGTCAGCAG
ACACAACAACCTCTCCCACCCCCCCCTTACCACGACCCTCATAACCACAT
CCTCAAAGCCACACACCCTTAACCGTTGAATTTGCGGCAGGACGGGGACT
GGGACGGTAAGGCCGTACGGCTGGTGCACTTTTTTGTTCGAGGAATGATA
ACCGTGCAGGGGGACACGGAAGGGCGCGCGCTAGGGTCGTCCTGGGAGGG
GCGCAGCATCACGCTCGCGCAGATTCTTCAAGCCGTCGAGTGCTTCAGGT
GA
back to top

Coding sequence (CDS) from alignment at H-elongata_contig11800:3988..8189-

>mRNA_H-elongata_contig11800.1395.1 ID=mRNA_H-elongata_contig11800.1395.1|Name=mRNA_H-elongata_contig11800.1395.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1374bp|location=Sequence derived from alignment at H-elongata_contig11800:3988..8189- (Himanthalia elongata Himel1 dioecious)
ATGCCCAACCCTCCCAACATTTCCTCCGAGCGTTCCAAGTCGAAGCACCG
ACCTCCTCCATCCCCAGCAACTGCACAGTCTCGAAGAAGTCTCGTTGGAG
GAGGAGGCTGGGGTCGCGTTAGGGCGCTGGGTTCATTCCCCAGCGGGTTG
ACTCGCAGTCCTAGCAGCAGCGACCTCGAGGGCAGCCATGGCGGTCCTTT
CAAGCATTCCTTGCAGGTGGTGGGTGGATCGTTGACGTTGAGAAAACTTG
GAGGGAATGCTAATGGTAATGGTGAAGGTGGAGGTGGAGCCGACGATGAT
GCGAAAAATGGCGGGCGGTATGGCTACGCGCTGAGCAGATGCCCAACCCT
CCCAACATTTCCTCCGAGCGTTCCAAGTCGAAGCACCGACCTCCTCCATC
CCCAGCAACTGCACAGTCTCGAAGAAGTCTCGTTGGAGGAGGAGGCTGGG
GTCGCGTTAGGGCGCTGGGTTCATTCCCCAGCGGGTTGACTCGCAGTCCT
AGCAGCAGCGACCTCGAGGGCAGCCATGGCGGTCCTTTCAAGCATTCCTT
GCAGGTGGTGGGTGGATCGTTGACGTTGAGAAAACTTGGAGGGAATGCTA
ATGGTAATGGTGAAGGTGGAGGTGGAGCCGACGATGATGCGAAAAATGGC
GGGCGGTATGGCTACGCGCTGAGCAGCTTCGAGCAGATTAACAAACCGAG
GCCTTGCTGGGAAGTGGCCGCAGAAGTGGTGGCAAAGGGGGCGTCAATGC
CTAAGAAGCGCCTGGTGCCCCTGCTGAGAGAACTTCGAGCAGATTAACAA
ACCGAGGCCTTGCTGGGAAGTGGCCGCAGAAGTGGTGGCAAAGGGGGCGT
CAATGCCTAAGAAGCGCCTGGTGCCCCTGCTGAGAGAACTCTGCATTCGA
ATTGGTGACAACGCCATCTGCGACGGCGCGTTCTTCGGAGCTCTCCTGGA
AATCCTGCGCTCGGCGAAGCTCTGCATTCGAATTGGTGACAACGCCATCT
GCGACGGCGCGTTCTTCGGAGCTCTCCTGGAAATCCTGCGCTCGGCGAAG
GACGGGGACTGGGACGGTAAGGCCGTACGGCTGGTGCACTTTTTTGTTCG
AGGAATGATAACCGTGCAGGGGGACACGGAAGGGCGCGCGCTAGGGTCGT
CCTGGGAGGGGCGCAGCATCACGCTCGCGCAGATTCTTCAAGCCGTCGAG
TGCTTCAGGTGAGACGGGGACTGGGACGGTAAGGCCGTACGGCTGGTGCA
CTTTTTTGTTCGAGGAATGATAACCGTGCAGGGGGACACGGAAGGGCGCG
CGCTAGGGTCGTCCTGGGAGGGGCGCAGCATCACGCTCGCGCAGATTCTT
CAAGCCGTCGAGTGCTTCAGGTGA
back to top