mRNA_H-elongata_contig117995.1394.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117995.1394.1
Unique NamemRNA_H-elongata_contig117995.1394.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig117995.1394.1 vs. uniprot
Match: D7FQV6_ECTSI (MPN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQV6_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 7.190e-30
Identity = 58/64 (90.62%), Postives = 62/64 (96.88%), Query Frame = 1 
Query:   25 GALEAEEVGVEHLLRDINDPSVSSLANQIKHKLSALSGLKNRLEEMQAYLRNVLAGKLPVNNQV 216
            GALEAEEVGVEHLLRDINDPSVSSLANQIKHKLSALSGLK++LEEMQ YL+NVL GKLPVNNQ+
Sbjct:  226 GALEAEEVGVEHLLRDINDPSVSSLANQIKHKLSALSGLKSKLEEMQTYLKNVLDGKLPVNNQI 289
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BLAST of mRNA_H-elongata_contig117995.1394.1 vs. uniprot
Match: A0A7S2XZZ4_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZZ4_9STRA)

HSP 1 Score: 106 bits (264), Expect = 9.840e-26
Identity = 52/72 (72.22%), Postives = 63/72 (87.50%), Query Frame = 1 
Query:   16 CVPGALEAEEVGVEHLLRDINDPSVSSLANQIKHKLSALSGLKNRLEEMQAYLRNVLAGKLPVNNQVHIYRV 231
            C  GALEAEEVGVEHLLRDINDPSVS+LA+QIKHK+++L GLK RL EM+ YL+NVL G+LPVNNQ+ +Y +
Sbjct:  185 CSIGALEAEEVGVEHLLRDINDPSVSTLASQIKHKMTSLGGLKERLLEMRDYLQNVLEGRLPVNNQI-VYNI 255
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BLAST of mRNA_H-elongata_contig117995.1394.1 vs. uniprot
Match: A0A5D6XJD7_9STRA (MitMem_reg domain-containing protein (Fragment) n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJD7_9STRA)

HSP 1 Score: 102 bits (254), Expect = 9.970e-26
Identity = 48/64 (75.00%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:   25 GALEAEEVGVEHLLRDINDPSVSSLANQIKHKLSALSGLKNRLEEMQAYLRNVLAGKLPVNNQV 216
            GA EAEEVGVEHLLRDINDPSVSSLA  +KHK++AL+GLK RLEEM+ YL NV+AG+LP N+Q+
Sbjct:   17 GAYEAEEVGVEHLLRDINDPSVSSLAGHVKHKMTALAGLKERLEEMKTYLENVVAGRLPPNHQI 80
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BLAST of mRNA_H-elongata_contig117995.1394.1 vs. uniprot
Match: A0A067D158_SAPPC (MPN domain-containing protein n=4 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067D158_SAPPC)

HSP 1 Score: 105 bits (262), Expect = 1.000e-25
Identity = 50/64 (78.12%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:   25 GALEAEEVGVEHLLRDINDPSVSSLANQIKHKLSALSGLKNRLEEMQAYLRNVLAGKLPVNNQV 216
            GA EAEEVGVEHLLRDINDPSVSSLA Q+KHK++AL+GLK R+EEM+ YL+NVL GKLPVN+Q+
Sbjct:  167 GAYEAEEVGVEHLLRDINDPSVSSLAGQVKHKMTALNGLKERVEEMRLYLQNVLDGKLPVNHQI 230
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BLAST of mRNA_H-elongata_contig117995.1394.1 vs. uniprot
Match: A0A2D4CCS2_PYTIN (26S proteasome non-ATPase regulatory subunit 7 n=2 Tax=Pythium TaxID=4797 RepID=A0A2D4CCS2_PYTIN)

HSP 1 Score: 105 bits (262), Expect = 1.350e-25
Identity = 50/64 (78.12%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:   25 GALEAEEVGVEHLLRDINDPSVSSLANQIKHKLSALSGLKNRLEEMQAYLRNVLAGKLPVNNQV 216
            GA EAEEVGVEHLLRDINDPSVSSLA Q+KHK++AL+GLK RLEEM+ YL NVLAG+LP N+Q+
Sbjct:  167 GAYEAEEVGVEHLLRDINDPSVSSLAGQVKHKMTALAGLKERLEEMKTYLENVLAGRLPPNHQI 230
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BLAST of mRNA_H-elongata_contig117995.1394.1 vs. uniprot
Match: K3WRI7_GLOUD (MPN domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WRI7_GLOUD)

HSP 1 Score: 105 bits (262), Expect = 1.500e-25
Identity = 50/64 (78.12%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:   25 GALEAEEVGVEHLLRDINDPSVSSLANQIKHKLSALSGLKNRLEEMQAYLRNVLAGKLPVNNQV 216
            GA EAEEVGVEHLLRDINDPSVSSLA Q+KHK++AL+GLK RLEEM+ YL NV+AGKLP N+Q+
Sbjct:  174 GAYEAEEVGVEHLLRDINDPSVSSLAGQVKHKMTALAGLKERLEEMKTYLENVVAGKLPPNHQI 237
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BLAST of mRNA_H-elongata_contig117995.1394.1 vs. uniprot
Match: H3G7T3_PHYRM (MPN domain-containing protein n=17 Tax=Peronosporaceae TaxID=4777 RepID=H3G7T3_PHYRM)

HSP 1 Score: 104 bits (259), Expect = 1.650e-25
Identity = 49/64 (76.56%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:   25 GALEAEEVGVEHLLRDINDPSVSSLANQIKHKLSALSGLKNRLEEMQAYLRNVLAGKLPVNNQV 216
            GA EAEEVGVEHLLRDINDPSVSSLA Q+KHK++AL+GLK RLEEM+ YL NV+AG+LP N+Q+
Sbjct:  156 GAYEAEEVGVEHLLRDINDPSVSSLAGQVKHKMTALNGLKERLEEMKTYLENVVAGRLPPNHQI 219
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BLAST of mRNA_H-elongata_contig117995.1394.1 vs. uniprot
Match: A0A835Z1W9_9STRA (26S proteasome non-ATPase regulatory subunit 7 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1W9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 2.730e-25
Identity = 50/64 (78.12%), Postives = 59/64 (92.19%), Query Frame = 1 
Query:   25 GALEAEEVGVEHLLRDINDPSVSSLANQIKHKLSALSGLKNRLEEMQAYLRNVLAGKLPVNNQV 216
            GALEAEEVGVEHLLRDINDPSVS+LANQIKHK++AL+GL+ RLEE+Q YL+ V +G LPVNNQ+
Sbjct:  186 GALEAEEVGVEHLLRDINDPSVSTLANQIKHKMAALAGLRERLEEVQTYLKAVQSGALPVNNQI 249
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BLAST of mRNA_H-elongata_contig117995.1394.1 vs. uniprot
Match: G4YS10_PHYSP (MPN domain-containing protein n=8 Tax=Peronosporaceae TaxID=4777 RepID=G4YS10_PHYSP)

HSP 1 Score: 104 bits (259), Expect = 3.210e-25
Identity = 49/64 (76.56%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:   25 GALEAEEVGVEHLLRDINDPSVSSLANQIKHKLSALSGLKNRLEEMQAYLRNVLAGKLPVNNQV 216
            GA EAEEVGVEHLLRDINDPSVSSLA Q+KHK++AL+GLK RLEEM+ YL NV+AG+LP N+Q+
Sbjct:  160 GAYEAEEVGVEHLLRDINDPSVSSLAGQVKHKMTALNGLKERLEEMKTYLENVVAGRLPPNHQI 223
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BLAST of mRNA_H-elongata_contig117995.1394.1 vs. uniprot
Match: M4BDS5_HYAAE (MPN domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BDS5_HYAAE)

HSP 1 Score: 103 bits (258), Expect = 5.260e-25
Identity = 50/64 (78.12%), Postives = 57/64 (89.06%), Query Frame = 1 
Query:   25 GALEAEEVGVEHLLRDINDPSVSSLANQIKHKLSALSGLKNRLEEMQAYLRNVLAGKLPVNNQV 216
            GA EAEEVGVEHLLRDINDPSVSSLA Q+KHK++ALSGLK RLEEM+ YL NV+AG+LP N Q+
Sbjct:  175 GAYEAEEVGVEHLLRDINDPSVSSLAGQVKHKMTALSGLKERLEEMKMYLENVVAGRLPPNYQI 238
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117995.1394.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQV6_ECTSI7.190e-3090.63MPN domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2XZZ4_9STRA9.840e-2672.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A5D6XJD7_9STRA9.970e-2675.00MitMem_reg domain-containing protein (Fragment) n=... [more]
A0A067D158_SAPPC1.000e-2578.13MPN domain-containing protein n=4 Tax=Saprolegniac... [more]
A0A2D4CCS2_PYTIN1.350e-2578.1326S proteasome non-ATPase regulatory subunit 7 n=2... [more]
K3WRI7_GLOUD1.500e-2578.13MPN domain-containing protein n=1 Tax=Globisporang... [more]
H3G7T3_PHYRM1.650e-2576.56MPN domain-containing protein n=17 Tax=Peronospora... [more]
A0A835Z1W9_9STRA2.730e-2578.1326S proteasome non-ATPase regulatory subunit 7 n=1... [more]
G4YS10_PHYSP3.210e-2576.56MPN domain-containing protein n=8 Tax=Peronosporac... [more]
M4BDS5_HYAAE5.260e-2578.13MPN domain-containing protein n=1 Tax=Hyaloperonos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117995contigH-elongata_contig117995:7..715 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue1.7e-24
Seed eggNOG ortholog2880.D7FQV6
Preferred namePSMD7
KEGG koko:K03038,ko:K08825,ko:K20306
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
GOsGO:0000003,GO:0000502,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003006,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005819,GO:0005829,GO:0005838,GO:0005856,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006887,GO:0006950,GO:0006952,GO:0006955,GO:0007088,GO:0007275,GO:0007346,GO:0008150,GO:0008152,GO:0008541,GO:0009056,GO:0009057,GO:0009653,GO:0009790,GO:0009791,GO:0009793,GO:0009896,GO:0009965,GO:0009987,GO:0010016,GO:0010154,GO:0010498,GO:0010564,GO:0010638,GO:0010965,GO:0012505,GO:0015630,GO:0016192,GO:0016579,GO:0019538,GO:0019941,GO:0022414,GO:0022624,GO:0030071,GO:0030141,GO:0030163,GO:0030425,GO:0031331,GO:0031410,GO:0031597,GO:0031974,GO:0031981,GO:0031982,GO:0031983,GO:0032270,GO:0032436,GO:0032501,GO:0032502,GO:0032940,GO:0032991,GO:0033043,GO:0033044,GO:0033045,GO:0033047,GO:0034515,GO:0034774,GO:0036211,GO:0036230,GO:0036477,GO:0042119,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0043412,GO:0043632,GO:0043687,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044433,GO:0044444,GO:0044445,GO:0044446,GO:0044463,GO:0044464,GO:0045055,GO:0045087,GO:0045321,GO:0045732,GO:0045787,GO:0045840,GO:0045842,GO:0045862,GO:0045931,GO:0046903,GO:0046983,GO:0048316,GO:0048366,GO:0048367,GO:0048518,GO:0048522,GO:0048608,GO:0048731,GO:0048827,GO:0048856,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051179,GO:0051233,GO:0051234,GO:0051247,GO:0051603,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051983,GO:0051984,GO:0060205,GO:0061458,GO:0062033,GO:0065007,GO:0070013,GO:0070646,GO:0070647,GO:0071704,GO:0072686,GO:0090068,GO:0097447,GO:0097458,GO:0097708,GO:0099402,GO:0099503,GO:0101002,GO:0120025,GO:0120038,GO:1901564,GO:1901565,GO:1901575,GO:1901800,GO:1901970,GO:1901987,GO:1901989,GO:1901990,GO:1901992,GO:1902099,GO:1902101,GO:1902494,GO:1903052,GO:1903364,GO:1904813,GO:1905368,GO:1905369,GO:1905392,GO:1905818,GO:1905820,GO:1990023,GO:2001252
EggNOG free text desc.proteasome-mediated ubiquitin-dependent protein catabolic process
EggNOG OGsCOG1310@1,KOG1556@2759
EC2.7.12.1
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03051,ko04131
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size240
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929688.5498414-CDS-H-elongata_contig117995:6..1141622929688.5498414-CDS-H-elongata_contig117995:6..114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117995 7..114 +
1691679119.412529-CDS-H-elongata_contig117995:6..1141691679119.412529-CDS-H-elongata_contig117995:6..114Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117995 7..114 +
1622929688.5592399-CDS-H-elongata_contig117995:583..7151622929688.5592399-CDS-H-elongata_contig117995:583..715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117995 584..715 +
1691679119.4251742-CDS-H-elongata_contig117995:583..7151691679119.4251742-CDS-H-elongata_contig117995:583..715Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117995 584..715 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117995.1394.1prot_H-elongata_contig117995.1394.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117995 7..715 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117995.1394.1

>prot_H-elongata_contig117995.1394.1 ID=prot_H-elongata_contig117995.1394.1|Name=mRNA_H-elongata_contig117995.1394.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=80bp
MIPLFCVPGALEAEEVGVEHLLRDINDPSVSSLANQIKHKLSALSGLKNR
LEEMQAYLRNVLAGKLPVNNQVHIYRVLY*
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mRNA from alignment at H-elongata_contig117995:7..715+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117995.1394.1 ID=mRNA_H-elongata_contig117995.1394.1|Name=mRNA_H-elongata_contig117995.1394.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=709bp|location=Sequence derived from alignment at H-elongata_contig117995:7..715+ (Himanthalia elongata Himel1 dioecious)
ATGATTCCCCTTTTCTGTGTTCCAGGTGCGTTAGAGGCCGAGGAAGTGGG
TGTGGAGCACCTCCTGCGGGATATCAACGACCCCTCGGTGTCAAGCCTGG
CCAATCAGGTGGGGAAGGCGATTTGGCGTTGCGATAGCTTGGCAAATGAG
ATGTGTCGCTGATCCCTCGAGTCCCGAGCTTTTGGAGCTTGGCTGATCAA
ACTGGTTCAAGGTTGAAGGACCGAGCTTGCCCGTTAAGTGGGTAGAAAAA
TCTTGGCAACCGGATAGGTTTACGGTCGCTTAGGGTGCCAACCTAGCGAG
TCAATGTCCATTTCGGGTCAAAGCATTAATACGGCGCATCGAGAGGCACA
CGACTCTACATTAAAGGGTAATTATGTAAAGGGTACGTACGTAAACCTGT
ATTTCATCTATGTGTATATATTATGTTTCTGTAGATATTTCTGTGTGAGT
TTTGAAAACTCTACCTCCCGAAGGCAGAAGATCTTTTGCCGGCCAACCAC
TCCCCTCCCCCTCCTTCACGCCCTTCCCACGGTGCACATCATATATATAT
ATATATGTATATATATAATATATCAAGATCAAGCACAAGCTGTCTGCGTT
GAGCGGACTGAAGAATCGCCTCGAGGAGATGCAGGCCTACCTCAGGAATG
TTCTCGCCGGAAAGCTTCCCGTCAACAACCAGGTACACATCTATAGAGTA
TTGTACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig117995:7..715+

>mRNA_H-elongata_contig117995.1394.1 ID=mRNA_H-elongata_contig117995.1394.1|Name=mRNA_H-elongata_contig117995.1394.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=480bp|location=Sequence derived from alignment at H-elongata_contig117995:7..715+ (Himanthalia elongata Himel1 dioecious)
ATGATTCCCCTTTTCTGTGTTCCAGGTGCGTTAGAGGCCGAGGAAGTGGG
TGTGGAGCACCTCCTGCGGGATATCAACGACCCCTCGGTGTCAAGCCTGG
CCAATCAGATGATTCCCCTTTTCTGTGTTCCAGGTGCGTTAGAGGCCGAG
GAAGTGGGTGTGGAGCACCTCCTGCGGGATATCAACGACCCCTCGGTGTC
AAGCCTGGCCAATCAGATCAAGCACAAGCTGTCTGCGTTGAGCGGACTGA
AGAATCGCCTCGAGGAGATGCAGGCCTACCTCAGGAATGTTCTCGCCGGA
AAGCTTCCCGTCAACAACCAGGTACACATCTATAGAGTATTGTACTAAAT
CAAGCACAAGCTGTCTGCGTTGAGCGGACTGAAGAATCGCCTCGAGGAGA
TGCAGGCCTACCTCAGGAATGTTCTCGCCGGAAAGCTTCCCGTCAACAAC
CAGGTACACATCTATAGAGTATTGTACTAA
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