mRNA_H-elongata_contig117990.1392.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117990.1392.1
Unique NamemRNA_H-elongata_contig117990.1392.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig117990.1392.1 vs. uniprot
Match: A0A6H5JUT2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUT2_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 3.920e-12
Identity = 43/99 (43.43%), Postives = 61/99 (61.62%), Query Frame = 1
Query:    1 KGQHGVGLAIKE---EIVNKDDIAIECISARLLKARISI-KSNFVTFVIAYAPTEEAME------GEKAKYIAALNSTVSSVPAREFVFILTDANARTG 267
            +G HGVG+AIKE   E V ++   +ECIS RL+KAR+ I ++  VTFV+ YAPTE            K  +  AL++ +  V +R+ + +L DANARTG
Sbjct:   48 RGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKARLQIGRTCRVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVYSRDHLVVLMDANARTG 146          
BLAST of mRNA_H-elongata_contig117990.1392.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.170e-11
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 1
Query:    4 GQHGVGLAIKEEIVNKDDIAIECISARLLKARISIKSN--FVTFVIAYAPTEEAMEGEKAKYIAALNSTVSSVPAREFVFILTDANARTG 267
            G HGVG+A++E +        E +  RL+  R  +  +   VTFV AYAPT+ A    K  +   L+S V  +PA+E++F+L DANA+TG
Sbjct:  371 GTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRIPAKEYLFVLMDANAQTG 460          
BLAST of mRNA_H-elongata_contig117990.1392.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 5.370e-11
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    4 GQHGVGLAIKEEIVNKDDIAIECISARLLKARISIKSN--FVTFVIAYAPTEEAMEGEKAKYIAALNSTVSSVPAREFVFILTDANARTG 267
            G HGVG+A++E +        E +  RL+  R  +  +   VTFV AYAPT+ A    K  +   L+S V   PA+E++F+L DANA+TG
Sbjct:  139 GTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG 228          
BLAST of mRNA_H-elongata_contig117990.1392.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 5.490e-11
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    4 GQHGVGLAIKEEIVNKDDIAIECISARLLKARISIKSN--FVTFVIAYAPTEEAMEGEKAKYIAALNSTVSSVPAREFVFILTDANARTG 267
            G HGVG+A++E +        E +  RL+  R  +  +   VTFV AYAPT+ A    K  +   L+S V   PA+E++F+L DANA+TG
Sbjct:   84 GTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG 173          
BLAST of mRNA_H-elongata_contig117990.1392.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE)

HSP 1 Score: 67.0 bits (162), Expect = 5.540e-11
Identity = 36/90 (40.00%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    4 GQHGVGLAIKEEIVNKDDIAIECISARLLKARISIKSN--FVTFVIAYAPTEEAMEGEKAKYIAALNSTVSSVPAREFVFILTDANARTG 267
            G HGVG+A++E +        E +  RL+  R  +  +   VTFV AYAPT+ A    K  +   L+S V   PA+E++F+L DANA+TG
Sbjct:  575 GTHGVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG 664          
BLAST of mRNA_H-elongata_contig117990.1392.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 7.310e-11
Identity = 35/90 (38.89%), Postives = 52/90 (57.78%), Query Frame = 1
Query:    4 GQHGVGLAIKEEIVNKDDIAIECISARLLKARISIKSN--FVTFVIAYAPTEEAMEGEKAKYIAALNSTVSSVPAREFVFILTDANARTG 267
            G HGVG+A++E +        E +  RL+  R  +  +   V FV AYAPT+ A    K  +   L+S V  +PA+E++F+L DANA+TG
Sbjct:  109 GTHGVGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKEYLFVLMDANAQTG 198          
BLAST of mRNA_H-elongata_contig117990.1392.1 vs. uniprot
Match: A0A6H5JBD7_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBD7_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 3.520e-10
Identity = 36/90 (40.00%), Postives = 51/90 (56.67%), Query Frame = 1
Query:    4 GQHGVGLAIKEEIVNKDDIAIECISARLLKARISIKSN--FVTFVIAYAPTEEAMEGEKAKYIAALNSTVSSVPAREFVFILTDANARTG 267
            G HGVG+A+KE +        E I  RL+  R+ +  +   V FV A APTE +    K  +   L+S V  +P++E V++L DANARTG
Sbjct:  123 GVHGVGIAVKESLCKTSTFTTEFIDERLMAMRLLLAGHRGAVNFVAASAPTEPSTASSKRVFWGKLDSLVRRIPSKECVYVLLDANARTG 212          
BLAST of mRNA_H-elongata_contig117990.1392.1 vs. uniprot
Match: UPI001E1CE094 (uncharacterized protein LOC123498409 n=1 Tax=Portunus trituberculatus TaxID=210409 RepID=UPI001E1CE094)

HSP 1 Score: 62.0 bits (149), Expect = 3.160e-9
Identity = 32/87 (36.78%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   10 HGVGLAIKEEIVNKDDIAIECISARLLKARISI-KSNFVTFVIAYAPTEEAMEGEKAKYIAALNSTVSSVPAREFVFILTDANARTG 267
            HGVG AI+ ++V + ++A + I+ RL+  RI I + + +T +  YAPT  + + +KA +   L+ T+ +VPA + + +L D NAR G
Sbjct:  177 HGVGFAIRSQLVQQHNLAPKAINERLMTVRIPITRDSQLTLISVYAPTLTSTDEDKAAFYTQLDRTIQAVPANDKLVVLGDFNARVG 263          
BLAST of mRNA_H-elongata_contig117990.1392.1 vs. uniprot
Match: A0A812DDH2_SEPPH (Hypothetical protein n=1 Tax=Sepia pharaonis TaxID=158019 RepID=A0A812DDH2_SEPPH)

HSP 1 Score: 56.2 bits (134), Expect = 3.270e-7
Identity = 29/87 (33.33%), Postives = 50/87 (57.47%), Query Frame = 1
Query:   10 HGVGLAIKEEIVNKDDIAIECISARLLKARISI-KSNFVTFVIAYAPTEEAMEGEKAKYIAALNSTVSSVPAREFVFILTDANARTG 267
            HGVG AI+ ++V + ++A   IS RL+  R+ I +   +T +  YAPT  + + +KA +   L+ T+    A + + +L + NAR G
Sbjct:  156 HGVGFAIRSQLVQQHNLAPTAISERLMTVRLPIMRGRHITLISVYAPTLNSPDEDKAAFYTQLDHTIQRATANDKLIVLGEFNARVG 242          
BLAST of mRNA_H-elongata_contig117990.1392.1 vs. uniprot
Match: G1KXV4_ANOCA (Endo/exonuclease/phosphatase domain-containing protein n=5 Tax=Anolis carolinensis TaxID=28377 RepID=G1KXV4_ANOCA)

HSP 1 Score: 55.1 bits (131), Expect = 8.300e-7
Identity = 33/87 (37.93%), Postives = 50/87 (57.47%), Query Frame = 1
Query:   10 HGVGLAIKEEIVNKDDIAIECISARLLKARISI-KSNFVTFVIAYAPTEEAMEGEKAKYIAALNSTVSSVPAREFVFILTDANARTG 267
            HGVG AI+ ++V     A   I+ RL   RI++ K+   T + AYAPT +A E  K K+   L++ +S +P  + + +L D NAR G
Sbjct:   75 HGVGFAIRNDLVKHLTEAPTGINERLSTLRINLAKNQQATIICAYAPTLDADEDIKEKFYCQLDTILSEIPKEDKIILLGDFNARVG 161          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117990.1392.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUT2_9PHAE3.920e-1243.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K319_9PHAE2.170e-1140.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQZ7_9PHAE5.370e-1140.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K7U5_9PHAE5.490e-1140.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JLM6_9PHAE5.540e-1140.00Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K9G5_9PHAE7.310e-1138.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JBD7_9PHAE3.520e-1040.00Reverse transcriptase domain-containing protein n=... [more]
UPI001E1CE0943.160e-936.78uncharacterized protein LOC123498409 n=1 Tax=Portu... [more]
A0A812DDH2_SEPPH3.270e-733.33Hypothetical protein n=1 Tax=Sepia pharaonis TaxID... [more]
G1KXV4_ANOCA8.300e-737.93Endo/exonuclease/phosphatase domain-containing pro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117990contigH-elongata_contig117990:26..292 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929688.0132315-CDS-H-elongata_contig117990:25..2921622929688.0132315-CDS-H-elongata_contig117990:25..292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117990 26..292 -
1691679119.3822258-CDS-H-elongata_contig117990:25..2921691679119.3822258-CDS-H-elongata_contig117990:25..292Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117990 26..292 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117990.1392.1prot_H-elongata_contig117990.1392.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117990 26..292 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117990.1392.1

>prot_H-elongata_contig117990.1392.1 ID=prot_H-elongata_contig117990.1392.1|Name=mRNA_H-elongata_contig117990.1392.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=89bp
KGQHGVGLAIKEEIVNKDDIAIECISARLLKARISIKSNFVTFVIAYAPT
EEAMEGEKAKYIAALNSTVSSVPAREFVFILTDANARTG
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mRNA from alignment at H-elongata_contig117990:26..292-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117990.1392.1 ID=mRNA_H-elongata_contig117990.1392.1|Name=mRNA_H-elongata_contig117990.1392.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=267bp|location=Sequence derived from alignment at H-elongata_contig117990:26..292- (Himanthalia elongata Himel1 dioecious)
AAGGGGCAACATGGGGTGGGACTAGCGATAAAGGAGGAGATCGTTAACAA GGACGACATCGCAATCGAGTGCATCAGCGCACGTCTCCTGAAGGCTCGAA TATCGATTAAATCTAATTTTGTTACGTTTGTGATAGCTTACGCTCCGACC GAGGAAGCGATGGAAGGGGAGAAGGCCAAGTATATCGCAGCCCTCAACAG CACCGTATCATCAGTGCCCGCTCGGGAATTCGTCTTCATTTTGACCGACG CAAATGCCAGGACAGGG
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Coding sequence (CDS) from alignment at H-elongata_contig117990:26..292-

>mRNA_H-elongata_contig117990.1392.1 ID=mRNA_H-elongata_contig117990.1392.1|Name=mRNA_H-elongata_contig117990.1392.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=534bp|location=Sequence derived from alignment at H-elongata_contig117990:26..292- (Himanthalia elongata Himel1 dioecious)
AAGGGGCAACATGGGGTGGGACTAGCGATAAAGGAGGAGATCGTTAACAA
GGACGACATCGCAATCGAGTGCATCAGCGCACGTCTCCTGAAGGCTCGAA
TATCGATTAAATCTAATTTTGTTACGTTTGTGATAGCTTACGCTCCGACC
GAGGAAGCGATGGAAGGGGAGAAGGCCAAGTATATCGCAGCCCTCAACAG
CACCGTATCATCAGTGCCCGCTCGGGAATTCGTCTTCATTTTGACCGACG
CAAATGCCAGGACAGGGAAGGGGCAACATGGGGTGGGACTAGCGATAAAG
GAGGAGATCGTTAACAAGGACGACATCGCAATCGAGTGCATCAGCGCACG
TCTCCTGAAGGCTCGAATATCGATTAAATCTAATTTTGTTACGTTTGTGA
TAGCTTACGCTCCGACCGAGGAAGCGATGGAAGGGGAGAAGGCCAAGTAT
ATCGCAGCCCTCAACAGCACCGTATCATCAGTGCCCGCTCGGGAATTCGT
CTTCATTTTGACCGACGCAAATGCCAGGACAGGG
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