mRNA_H-elongata_contig11789.1387.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11789.1387.1
Unique NamemRNA_H-elongata_contig11789.1387.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11789.1387.1 vs. uniprot
Match: A0A6H5L640_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L640_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 6.700e-6
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 MTKEIREADAKLKKELREQRRQHRAAGLKTGVVLEVVVAKAADETGFCEGHGSG 162
            MT+E +  +A++K ELREQRRQ++AAG K+GVVLE  VAKAA      +G G G
Sbjct:  180 MTRERKAEEARIKAELREQRRQYKAAGFKSGVVLEAFVAKAAGTGTVGDGVGGG 233
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BLAST of mRNA_H-elongata_contig11789.1387.1 vs. uniprot
Match: D8LEM4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM4_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 1.780e-5
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1 
Query:    1 MTKEIREADAKLKKELREQRRQHRAAGLKTGVVLEVVVAKAADETGFCEGHGSG 162
            MT+E +  +A+ K ELREQRRQ++AAGLK+GVVLE  VA+AA      +G G G
Sbjct:  230 MTRERKAEEARFKAELREQRRQYKAAGLKSGVVLEAFVAEAAGTGTAGDGVGGG 283
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11789.1387.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L640_9PHAE6.700e-655.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEM4_ECTSI1.780e-555.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11789contigH-elongata_contig11789:4783..5046 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size265
Cds size264
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929687.1107593-CDS-H-elongata_contig11789:4782..50461622929687.1107593-CDS-H-elongata_contig11789:4782..5046Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11789 4783..5046 +
1691679119.2272296-CDS-H-elongata_contig11789:4782..50461691679119.2272296-CDS-H-elongata_contig11789:4782..5046Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11789 4783..5046 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11789.1387.1prot_H-elongata_contig11789.1387.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11789 4783..5046 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11789.1387.1

>prot_H-elongata_contig11789.1387.1 ID=prot_H-elongata_contig11789.1387.1|Name=mRNA_H-elongata_contig11789.1387.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=88bp
MTKEIREADAKLKKELREQRRQHRAAGLKTGVVLEVVVAKAADETGFCEG
HGSGTGRSSPVEVETICGKRVEAGGSENGTVDLTRKRR
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mRNA from alignment at H-elongata_contig11789:4783..5046+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11789.1387.1 ID=mRNA_H-elongata_contig11789.1387.1|Name=mRNA_H-elongata_contig11789.1387.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=264bp|location=Sequence derived from alignment at H-elongata_contig11789:4783..5046+ (Himanthalia elongata Himel1 dioecious)
ATGACTAAGGAGATCCGGGAAGCTGACGCCAAGCTAAAGAAAGAACTGCG
GGAGCAGCGCAGGCAACATAGGGCGGCGGGATTGAAAACCGGAGTCGTGC
TCGAGGTTGTTGTGGCGAAAGCCGCGGATGAGACTGGTTTCTGTGAAGGG
CACGGGAGCGGCACCGGAAGGTCATCGCCCGTAGAGGTAGAAACCATTTG
TGGCAAGCGAGTTGAGGCTGGCGGTTCAGAGAATGGCACAGTAGATTTAA
CACGGAAGAGGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig11789:4783..5046+

>mRNA_H-elongata_contig11789.1387.1 ID=mRNA_H-elongata_contig11789.1387.1|Name=mRNA_H-elongata_contig11789.1387.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=528bp|location=Sequence derived from alignment at H-elongata_contig11789:4783..5046+ (Himanthalia elongata Himel1 dioecious)
ATGACTAAGGAGATCCGGGAAGCTGACGCCAAGCTAAAGAAAGAACTGCG
GGAGCAGCGCAGGCAACATAGGGCGGCGGGATTGAAAACCGGAGTCGTGC
TCGAGGTTGTTGTGGCGAAAGCCGCGGATGAGACTGGTTTCTGTGAAGGG
CACGGGAGCGGCACCGGAAGGTCATCGCCCGTAGAGGTAGAAACCATTTG
TGGCAAGCGAGTTGAGGCTGGCGGTTCAGAGAATGGCACAGTAGATTTAA
CACGGAAGAGGAGGATGACTAAGGAGATCCGGGAAGCTGACGCCAAGCTA
AAGAAAGAACTGCGGGAGCAGCGCAGGCAACATAGGGCGGCGGGATTGAA
AACCGGAGTCGTGCTCGAGGTTGTTGTGGCGAAAGCCGCGGATGAGACTG
GTTTCTGTGAAGGGCACGGGAGCGGCACCGGAAGGTCATCGCCCGTAGAG
GTAGAAACCATTTGTGGCAAGCGAGTTGAGGCTGGCGGTTCAGAGAATGG
CACAGTAGATTTAACACGGAAGAGGAGG
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