mRNA_H-elongata_contig117845.1386.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117845.1386.1
Unique NamemRNA_H-elongata_contig117845.1386.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig117845.1386.1 vs. uniprot
Match: A0A6H5K5M3_9PHAE (S1 motif domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M3_9PHAE)

HSP 1 Score: 405 bits (1042), Expect = 8.720e-141
Identity = 207/223 (92.83%), Postives = 218/223 (97.76%), Query Frame = 1
Query:    1 QQGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSKKVSWPLYKKYGHAYDAFKLTLQDEEDVFVGLDIDDETKRAMITNIKRRLAPQPSKVRADVEVTCYTYEGIDAVKAALMAGKAVGDERTPIQIKLIAPPRYVMDTMTSDKDLGKSVLEKAIDVVTHNIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPEDV 669
            ++GYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLS KVSWPLYKKYGHA+DAFKLTLQDEEDVFVGLDID+ETK+AMIT+IKRRLAPQPSKVRAD+EVTCYTYEGIDAVKAAL+AGKAVGDERTPIQIKLIAPPRYVMDTMT DKDLGKSVLEKAI+VVT  I+ +GGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPEDV
Sbjct:  109 EKGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSTKVSWPLYKKYGHAFDAFKLTLQDEEDVFVGLDIDEETKQAMITHIKRRLAPQPSKVRADIEVTCYTYEGIDAVKAALIAGKAVGDERTPIQIKLIAPPRYVMDTMTLDKDLGKSVLEKAIEVVTEKIIESGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPEDV 331          
BLAST of mRNA_H-elongata_contig117845.1386.1 vs. uniprot
Match: A0A835YGW1_9STRA (Eukaryotic translation initiation factor 2 alpha subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGW1_9STRA)

HSP 1 Score: 318 bits (816), Expect = 1.420e-106
Identity = 158/227 (69.60%), Postives = 191/227 (84.14%), Query Frame = 1
Query:    1 QQGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSKKVSWPLYKKYGHAYDAFKLTL----QDEEDVFVGLDIDDETKRAMITNIKRRLAPQPSKVRADVEVTCYTYEGIDAVKAALMAGKAVGDERTPIQIKLIAPPRYVMDTMTSDKDLGKSVLEKAIDVVTHNIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPEDV 669
            ++GYIDLSKRRVSPED+AKCEDRYNKAKAVHS+LRHVA+LRG  +EDL  +V WPL ++YG A+DAFKL L    ++E DVF GLD+DD T+ ++IT I+RRLAPQP K+R D+E+TCYTYEG+DA++ +L AG  VG+E   I+IKLIAPPRY +DTMT DKD GK+ LEKAI+V+T  I   GG+LEVK+APKAVSQREESEL AM+ERLALENEEIDGDAPEDV
Sbjct:   95 EKGYIDLSKRRVSPEDIAKCEDRYNKAKAVHSILRHVAELRGASVEDLYTRVGWPLQRRYGSAHDAFKLCLAGGEEEENDVFAGLDVDDNTRASLITYIRRRLAPQPIKIRGDIEITCYTYEGVDAIRESLQAGIDVGNEDMVIKIKLIAPPRYTIDTMTLDKDAGKAALEKAIEVITARIAEKGGRLEVKLAPKAVSQREESELAAMMERLALENEEIDGDAPEDV 321          
BLAST of mRNA_H-elongata_contig117845.1386.1 vs. uniprot
Match: A0A6U2GSC0_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A6U2GSC0_9STRA)

HSP 1 Score: 288 bits (737), Expect = 2.460e-94
Identity = 142/228 (62.28%), Postives = 181/228 (79.39%), Query Frame = 1
Query:    1 QQGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSKKVSWPLYKKYGHAYDAFKLTLQDE------EDVFVGLDIDDETKRAMITNIKRRLAPQPSKVRADVEVTCYTYEGIDAVKAALMAGKAVGDERTPIQIKLIAPPRYVMDTMTSDKDLGKSVLEKAIDVVTHNIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPED 666
            ++GYIDLSKRRVSPED+  CEDR+NKAKAVH VLRH+A+ R L LEDL +++ WPLYKKYGHAYDAFKL L DE      ED F  + + D+ K  +   I+RRLAPQP K+R+D+EV+C+TYEGIDA++ AL AG   G E TPI++KLIAPP YV+ TMT +KD G ++L ++IDV+   I A GGK++VKMAPKAVS +EE+ELQAM++RLALENEE+DGDAP++
Sbjct:  111 EKGYIDLSKRRVSPEDITACEDRFNKAKAVHGVLRHLAERRKLYLEDLYERIGWPLYKKYGHAYDAFKLALADEAAPGTVEDPFADVAVPDDLKDELKAYIRRRLAPQPIKIRSDIEVSCFTYEGIDAIREALFAGIDCGTENTPIKVKLIAPPIYVLSTMTLEKDAGIALLNRSIDVIRERITAKGGKMDVKMAPKAVSLKEETELQAMMDRLALENEEVDGDAPDE 338          
BLAST of mRNA_H-elongata_contig117845.1386.1 vs. uniprot
Match: A0A7S2XWK8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XWK8_9STRA)

HSP 1 Score: 286 bits (733), Expect = 7.940e-94
Identity = 143/218 (65.60%), Postives = 179/218 (82.11%), Query Frame = 1
Query:    1 QQGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSKKVSWPLYKKYGHAYDAFKLTLQDEEDVFVGLDIDDETKRAMITNIKRRLAPQPSKVRADVEVTCYTYEGIDAVKAALMAGKAVGDERTPIQIKLIAPPRYVMDTMTSDKDLGKSVLEKAIDVVTHNIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGD 654
            ++GYIDLSKRRVSPEDV KCEDRYNKAKAVHSVLRHVA+ + LVLEDL ++V WPLY  Y H YDAFK+ L  ++DVF GLD+ DE K  ++T I+R+LAPQP K+RAD+EVTC+TYEGI+AV++AL AG+A+G  + PI+I+LIAPP YVM  MT +KD G  +L ++I+ V   + + GG +EVKMAPKAVSQREESELQAM+ERLA+EN E+DGD
Sbjct:  113 EKGYIDLSKRRVSPEDVVKCEDRYNKAKAVHSVLRHVAEKKALVLEDLYRRVGWPLYTSYKHCYDAFKVALV-QDDVFNGLDVPDEIKTELLTYIRRKLAPQPIKIRADIEVTCFTYEGIEAVRSALQAGQALGSAQEPIKIRLIAPPMYVMTCMTLEKDSGIELLNQSINAVREALESKGGTMEVKMAPKAVSQREESELQAMMERLAVENAELDGD 329          
BLAST of mRNA_H-elongata_contig117845.1386.1 vs. uniprot
Match: A0A482S3R4_9ARCH (S1 RNA-binding domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S3R4_9ARCH)

HSP 1 Score: 280 bits (717), Expect = 3.010e-92
Identity = 143/227 (63.00%), Postives = 177/227 (77.97%), Query Frame = 1
Query:    1 QQGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSKKVSWPLYKKYGHAYDAFKLTLQDEE----DVFVGLDIDDETKRAMITNIKRRLAPQPSKVRADVEVTCYTYEGIDAVKAALMAGKAVGDERTPIQIKLIAPPRYVMDTMTSDKDLGKSVLEKAIDVVTHNIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPEDV 669
            ++GYIDLSKRRV PEDV KCE+RYNKAKAVHSVLR+VA+++ + LE L +++ WPLY+KYGHAYDAFK+ L ++     D+F  L+ D E K A++  IKRRLAPQP KVRAD+EVTC+TYEGIDA+KAAL AG+        ++IKLIAPP YVM  MT DK++G  V+  AI+ +   I A GG L+VKMAPKAV+ REESELQAML+RLALE EE+DGDAPED 
Sbjct:   46 EKGYIDLSKRRVDPEDVVKCEERYNKAKAVHSVLRYVAEVKKIKLETLYQQIGWPLYRKYGHAYDAFKMALSNDYQHGGDIFQDLEADPEVKSAVLAYIKRRLAPQPVKVRADIEVTCFTYEGIDAIKAALAAGEQKSTADNVVRIKLIAPPMYVMTMMTLDKEVGVEVMNLAIEAIGAEIRARGGSLDVKMAPKAVTLREESELQAMLDRLALEQEEVDGDAPEDA 272          
BLAST of mRNA_H-elongata_contig117845.1386.1 vs. uniprot
Match: A0A448YZU6_9STRA (S1 motif domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YZU6_9STRA)

HSP 1 Score: 282 bits (721), Expect = 5.400e-92
Identity = 139/225 (61.78%), Postives = 178/225 (79.11%), Query Frame = 1
Query:    1 QQGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSKKVSWPLYKKYGHAYDAFKLTLQDEEDV---FVGLDIDDETKRAMITNIKRRLAPQPSKVRADVEVTCYTYEGIDAVKAALMAGKAVGDERTPIQIKLIAPPRYVMDTMTSDKDLGKSVLEKAIDVVTHNIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPED 666
            ++GYIDLSKRRVSPEDV  CE+R+NKAK VH VLRH+A+ R   LEDL +K+ WPLYKKYGHAYDAFKL + +E+D    F  LD+  + K  + + I RRLAPQP K+R+D+EV+C+TYEGIDA++ AL AG  +G E+ PI+IKLIAPP YV+ T T +K++G  +L +AI+V+   I A GGK++VKMAPKAVS +EESELQ M++RLALENEE+DGDAPED
Sbjct:  108 EKGYIDLSKRRVSPEDVQACEERFNKAKTVHGVLRHLAERRKYFLEDLYEKIGWPLYKKYGHAYDAFKLAISEEKDAGDPFAELDVPQDLKDELKSYILRRLAPQPIKIRSDIEVSCFTYEGIDAIREALFAGMTLGTEQNPIKIKLIAPPIYVLSTTTLEKEVGIGLLNQAIEVIKEKITAKGGKIDVKMAPKAVSVKEESELQEMMDRLALENEEVDGDAPED 332          
BLAST of mRNA_H-elongata_contig117845.1386.1 vs. uniprot
Match: B8C817_THAPS (Eukaryotic translation initiation factor 2 alpha subunit n=2 Tax=Thalassiosirales TaxID=33847 RepID=B8C817_THAPS)

HSP 1 Score: 280 bits (717), Expect = 2.560e-91
Identity = 140/229 (61.14%), Postives = 178/229 (77.73%), Query Frame = 1
Query:    7 GYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSKKVSWPLYKKYGHAYDAFKLTLQDE---------EDVFVGLDIDDETKRAMITNIKRRLAPQPSKVRADVEVTCYTYEGIDAVKAALMAGKAVGDERTPIQIKLIAPPRYVMDTMTSDKDLGKSVLEKAIDVVTHNIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPED 666
            GYIDLSKRRVSPEDVA CED++NKAKAVH VLRH+AD R   LEDL ++++WPLY+KYGHAYDAFK+ L DE          D F  LD+  +    +   I+RRLAPQP K+RADVEV+C+TY+GIDA++ AL AG AVG E +PI+I+LIAPP YV+ TMT +K+ G ++L+K+IDV+   I A GGK++VKMAPKAVS +EE+ELQAM+ERL LEN E++GD PE+
Sbjct:  109 GYIDLSKRRVSPEDVAACEDKFNKAKAVHGVLRHLADRRKFYLEDLCERIAWPLYRKYGHAYDAFKIALADEAASGGEAAENDPFTSLDVPPDVIEELKLYIRRRLAPQPIKIRADVEVSCFTYDGIDAIRDALFAGIAVGTENSPIKIRLIAPPIYVLSTMTLEKEAGIALLQKSIDVILEKISAKGGKMDVKMAPKAVSLKEETELQAMMERLELENREVEGDEPEE 337          
BLAST of mRNA_H-elongata_contig117845.1386.1 vs. uniprot
Match: A0A7S1DAC6_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DAC6_CYCTE)

HSP 1 Score: 276 bits (706), Expect = 5.930e-91
Identity = 136/223 (60.99%), Postives = 176/223 (78.92%), Query Frame = 1
Query:    7 GYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSKKVSWPLYKKYGHAYDAFKLTLQDEE---DVFVGLDIDDETKRAMITNIKRRLAPQPSKVRADVEVTCYTYEGIDAVKAALMAGKAVGDERTPIQIKLIAPPRYVMDTMTSDKDLGKSVLEKAIDVVTHNIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPED 666
            GYIDLSKRRVSPEDVA CEDR+NKAKAVH VLRH+A+ R L LEDL +++ WPLY+KYGHAYDAFKL + D+    D F  +D+ ++    +   I+RRLAPQP K+R+D+EV+C+TYEGIDA++ AL AG A   +   I+IKLIAPP YV+ TMT +K++G ++L+ AIDV+   I   GGKL+VKMAPKAVS +EE+ELQAM++RLA+ENEE+DGD PE+
Sbjct:   23 GYIDLSKRRVSPEDVAACEDRFNKAKAVHGVLRHLAERRKLYLEDLYERIGWPLYRKYGHAYDAFKLAIADDHGAVDPFADIDVPEDLLDELKAYIRRRLAPQPIKIRSDIEVSCFTYEGIDAIREALFAGMAKSTDSMQIKIKLIAPPIYVLSTMTLEKEVGIALLQDAIDVIEQKITQKGGKLDVKMAPKAVSLKEETELQAMMDRLAIENEEVDGDEPEE 245          
BLAST of mRNA_H-elongata_contig117845.1386.1 vs. uniprot
Match: A0A7S2BW88_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BW88_9STRA)

HSP 1 Score: 277 bits (708), Expect = 6.900e-90
Identity = 140/222 (63.06%), Postives = 176/222 (79.28%), Query Frame = 1
Query:    1 QQGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSKKVSWPLYKKYGHAYDAFKLTLQDEEDVFVGL-DIDDETKRAMITNIKRRLAPQPSKVRADVEVTCYTYEGIDAVKAALMAGKAVGDERTPIQIKLIAPPRYVMDTMTSDKDLGKSVLEKAIDVVTHNIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPE 663
            ++GYIDLSKRRV PE + +CE++YNK+KAV+ VLR VA+ +GL+L++L + V WPLYKKYGHAYDAFKL L D+ED+F  L D+D ET   +   IK+RLAPQP K+RAD+EVTC+TYEGIDAVK +L+AG A+G + +PI+IKLIAPP YV+ T T DKDLG   L KAI+VVT  I   GGK++VKMAPKAVSQREE+EL  ++E+LA E EE DGD  E
Sbjct:  116 EKGYIDLSKRRVDPEQITQCEEKYNKSKAVYRVLRQVAEKQGLILKELYRSVGWPLYKKYGHAYDAFKLCLTDQEDIFKDLPDLDPETVTVLTDYIKKRLAPQPVKIRADIEVTCFTYEGIDAVKESLLAGVALGTKDSPIKIKLIAPPMYVVTTSTLDKDLGIDALNKAIEVVTAKITEKGGKIDVKMAPKAVSQREEAELAKLMEQLAAEAEEEDGDXXE 337          
BLAST of mRNA_H-elongata_contig117845.1386.1 vs. uniprot
Match: A0A7S2U866_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2U866_9STRA)

HSP 1 Score: 276 bits (706), Expect = 1.110e-89
Identity = 145/227 (63.88%), Postives = 177/227 (77.97%), Query Frame = 1
Query:    1 QQGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSKKVSWPLYKKYGHAYDAFKLTLQDE----EDVFVGLD-IDDETKRAMITNIKRRLAPQPSKVRADVEVTCYTYEGIDAVKAALMAGKAVGDERTPIQIKLIAPPRYVMDTMTSDKDLGKSVLEKAIDVVTHNIVAAGGKLEVKMAPKAVSQREESELQAMLERLALENEEIDGDAPED 666
            ++GYIDLSKRRVSPEDVA CEDRYNKAKAVH VLRH+A+ R L LE+L +++ WPLYKKYGHAYDAFKL L D+    ED F  L  I  E    +   IKRRLAPQP K+R+D+EV+C+TYEGIDA++ AL AG A+  E + I+IKLIAPP YV+ TMT +KD G ++L KA + +   I   GGK+EVKMAPKAVS +EE+ELQAM++RLALENEE+DGDAPED
Sbjct:  109 EKGYIDLSKRRVSPEDVAACEDRYNKAKAVHGVLRHLAERRKLYLEELYERIGWPLYKKYGHAYDAFKLALVDDVTSSEDPFAELSGIPPELVDELKLYIKRRLAPQPIKIRSDIEVSCFTYEGIDAIREALFAGMALSTESSQIKIKLIAPPIYVLSTMTLEKDAGIALLTKANETILDIITKKGGKMEVKMAPKAVSIKEETELQAMMDRLALENEEVDGDAPED 335          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117845.1386.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5M3_9PHAE8.720e-14192.83S1 motif domain-containing protein n=1 Tax=Ectocar... [more]
A0A835YGW1_9STRA1.420e-10669.60Eukaryotic translation initiation factor 2 alpha s... [more]
A0A6U2GSC0_9STRA2.460e-9462.28Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A7S2XWK8_9STRA7.940e-9465.60Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A482S3R4_9ARCH3.010e-9263.00S1 RNA-binding domain-containing protein n=1 Tax=a... [more]
A0A448YZU6_9STRA5.400e-9261.78S1 motif domain-containing protein n=1 Tax=Pseudo-... [more]
B8C817_THAPS2.560e-9161.14Eukaryotic translation initiation factor 2 alpha s... [more]
A0A7S1DAC6_CYCTE5.930e-9160.99Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
A0A7S2BW88_9STRA6.900e-9063.06Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2U866_9STRA1.110e-8963.88Hypothetical protein n=1 Tax=Attheya septentrional... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117845contigH-elongata_contig117845:630..1612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score285.4
Seed ortholog evalue2.3e-74
Seed eggNOG ortholog35128.Thaps105
Preferred nameEIF2S1
KEGG koko:K03237
KEGG Pathwayko03013,ko04138,ko04140,ko04141,ko04210,ko04932,ko05160,ko05162,ko05164,ko05168,map03013,map04138,map04140,map04141,map04210,map04932,map05160,map05162,map05164,map05168
GOsGO:0000075,GO:0000077,GO:0000166,GO:0000278,GO:0001882,GO:0001883,GO:0002181,GO:0002183,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0005850,GO:0005851,GO:0006412,GO:0006413,GO:0006417,GO:0006446,GO:0006464,GO:0006468,GO:0006518,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006950,GO:0006974,GO:0006979,GO:0006984,GO:0006986,GO:0006996,GO:0007049,GO:0007093,GO:0007154,GO:0007165,GO:0007346,GO:0007568,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009266,GO:0009267,GO:0009314,GO:0009408,GO:0009411,GO:0009416,GO:0009605,GO:0009628,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010038,GO:0010042,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010608,GO:0010629,GO:0010941,GO:0010942,GO:0010948,GO:0016043,GO:0016310,GO:0017076,GO:0017148,GO:0019001,GO:0019222,GO:0019538,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030968,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031570,GO:0031571,GO:0031667,GO:0031668,GO:0031669,GO:0032055,GO:0032057,GO:0032091,GO:0032268,GO:0032269,GO:0032502,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032991,GO:0033290,GO:0033554,GO:0034063,GO:0034198,GO:0034248,GO:0034249,GO:0034599,GO:0034605,GO:0034620,GO:0034622,GO:0034641,GO:0034644,GO:0034645,GO:0034976,GO:0035639,GO:0035770,GO:0035966,GO:0035967,GO:0036094,GO:0036211,GO:0036464,GO:0036499,GO:0042221,GO:0042594,GO:0042981,GO:0042995,GO:0043021,GO:0043022,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043393,GO:0043412,GO:0043555,GO:0043558,GO:0043603,GO:0043604,GO:0043614,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044207,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044773,GO:0044774,GO:0044783,GO:0044819,GO:0044877,GO:0045786,GO:0045930,GO:0045947,GO:0046777,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0051098,GO:0051099,GO:0051100,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051716,GO:0051726,GO:0055085,GO:0060255,GO:0065003,GO:0065007,GO:0065009,GO:0070887,GO:0070925,GO:0070993,GO:0071214,GO:0071241,GO:0071248,GO:0071287,GO:0071310,GO:0071478,GO:0071482,GO:0071496,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0097159,GO:0097367,GO:0097386,GO:0097449,GO:0097450,GO:0097451,GO:0104004,GO:0120025,GO:1901214,GO:1901216,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902806,GO:1902807,GO:1903047,GO:1904035,GO:1904037,GO:1904424,GO:1905097,GO:1905098,GO:1990737,GO:1990904,GO:1990928,GO:2000045,GO:2000112,GO:2000113,GO:2000134,GO:2000674,GO:2000676
EggNOG free text desc.Eukaryotic translation initiation factor 2 alpha subunit
EggNOG OGs2XB8H@2836,COG1093@1,KOG2916@2759
COG Functional cat.J
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03012
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptioneukaryotic initiation factor 2 alpha subunit
Ec32 orthologEc-12_002490.1
Exons2
Model size672
Cds size672
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929687.051007-CDS-H-elongata_contig117845:629..7461622929687.051007-CDS-H-elongata_contig117845:629..746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117845 630..746 -
1691679119.2058864-CDS-H-elongata_contig117845:629..7461691679119.2058864-CDS-H-elongata_contig117845:629..746Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117845 630..746 -
1622929687.0689003-CDS-H-elongata_contig117845:1057..16121622929687.0689003-CDS-H-elongata_contig117845:1057..1612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117845 1058..1612 -
1691679119.2183826-CDS-H-elongata_contig117845:1057..16121691679119.2183826-CDS-H-elongata_contig117845:1057..1612Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117845 1058..1612 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117845.1386.1prot_H-elongata_contig117845.1386.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117845 630..1612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117845.1386.1

>prot_H-elongata_contig117845.1386.1 ID=prot_H-elongata_contig117845.1386.1|Name=mRNA_H-elongata_contig117845.1386.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=224bp
QQGYIDLSKRRVSPEDVAKCEDRYNKAKAVHSVLRHVADLRGLVLEDLSK
KVSWPLYKKYGHAYDAFKLTLQDEEDVFVGLDIDDETKRAMITNIKRRLA
PQPSKVRADVEVTCYTYEGIDAVKAALMAGKAVGDERTPIQIKLIAPPRY
VMDTMTSDKDLGKSVLEKAIDVVTHNIVAAGGKLEVKMAPKAVSQREESE
LQAMLERLALENEEIDGDAPEDV*
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mRNA from alignment at H-elongata_contig117845:630..1612-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117845.1386.1 ID=mRNA_H-elongata_contig117845.1386.1|Name=mRNA_H-elongata_contig117845.1386.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=983bp|location=Sequence derived from alignment at H-elongata_contig117845:630..1612- (Himanthalia elongata Himel1 dioecious)
CAACAGGGGTACATCGACTTGTCGAAGCGGCGGGTAAGCCCTGAAGATGT GGCCAAGTGCGAGGACCGCTACAATAAGGCCAAGGCGGTGCACAGCGTTC TCCGCCACGTGGCAGACCTCAGAGGCCTTGTTCTGGAAGACTTGAGCAAG AAAGTATCTTGGCCGTTGTATAAGAAGTACGGACACGCTTACGACGCCTT CAAGCTGACGCTACAGGATGAAGAGGATGTGTTCGTGGGGTTAGATATCG ATGACGAGACGAAGCGGGCCATGATTACGAACATCAAGCGTCGATTGGCA CCACAGCCTAGCAAGGTGCGCGCGGACGTGGAGGTGACTTGCTACACGTA TGAGGGTATTGATGCGGTGAAGGCGGCTTTGATGGCGGGGAAGGCTGTCG GCGACGAGAGGACACCCATTCAAATCAAGCTCATCGCGCCCCCCCGTTAC GTTATGGACACCATGACGTCGGATAAAGACTTGGGGAAGTCCGTGCTGGA AAAAGCTATTGACGTTGTCACCCACAACATCGTCGCGGCTGGCGGAAAGC TCGAGGTGATGCAAGATTTACGTCGGCTTCTCTTGAAATATCTCGACATG TCCAGGTTCTGCACGAATTATGCACCACTATCGTTTCCTATTGTATGGAG AGGACGTTAAACGTTTTCCTTCCGGATGGTGGTTTTTCTACCGAGGACTA CTGCATCCGCCGCCGCAGAGCTCTAACAACGTTTATGCGTTGCCACAAGC TGGCAGCTACCGGTCAAATGTAATTCTACCGCTCCTTAGTCAATCCGTGT CTGTTCTCGCGCGCTAATCAACCGAGACTGCGTGGTATTCGTCCATCATG TGCCGTTTTCCTTCAGGTAAAGATGGCGCCGAAGGCTGTCAGCCAGCGGG AAGAATCCGAGCTTCAGGCTATGCTTGAGCGTTTAGCTCTGGAGAACGAA GAAATAGATGGAGATGCCCCTGAAGATGTTTGA
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Coding sequence (CDS) from alignment at H-elongata_contig117845:630..1612-

>mRNA_H-elongata_contig117845.1386.1 ID=mRNA_H-elongata_contig117845.1386.1|Name=mRNA_H-elongata_contig117845.1386.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1344bp|location=Sequence derived from alignment at H-elongata_contig117845:630..1612- (Himanthalia elongata Himel1 dioecious)
CAACAGGGGTACATCGACTTGTCGAAGCGGCGGGTAAGCCCTGAAGATGT
GGCCAAGTGCGAGGACCGCTACAATAAGGCCAAGGCGGTGCACAGCGTTC
TCCGCCACGTGGCAGACCTCAGAGGCCTTGTTCTGGAAGACTTGAGCAAG
AAAGTATCTTGGCCGTTGTATAAGAAGTACGGACACGCTTACGACGCCTT
CAAGCTGACGCTACAGGATGAAGAGGATGTGTTCGTGGGGTTAGATATCG
ATGACGAGACGAAGCGGGCCATGATTACGAACATCAAGCGTCGATTGGCA
CCACAGCCTAGCAAGGTGCGCGCGGACGTGGAGGTGACTTGCTACACGTA
TGAGGGTATTGATGCGGTGAAGGCGGCTTTGATGGCGGGGAAGGCTGTCG
GCGACGAGAGGACACCCATTCAAATCAAGCTCATCGCGCCCCCCCGTTAC
GTTATGGACACCATGACGTCGGATAAAGACTTGGGGAAGTCCGTGCTGGA
AAAAGCTATTGACGTTGTCACCCACAACATCGTCGCGGCTGGCGGAAAGC
TCGAGCAACAGGGGTACATCGACTTGTCGAAGCGGCGGGTAAGCCCTGAA
GATGTGGCCAAGTGCGAGGACCGCTACAATAAGGCCAAGGCGGTGCACAG
CGTTCTCCGCCACGTGGCAGACCTCAGAGGCCTTGTTCTGGAAGACTTGA
GCAAGAAAGTATCTTGGCCGTTGTATAAGAAGTACGGACACGCTTACGAC
GCCTTCAAGCTGACGCTACAGGATGAAGAGGATGTGTTCGTGGGGTTAGA
TATCGATGACGAGACGAAGCGGGCCATGATTACGAACATCAAGCGTCGAT
TGGCACCACAGCCTAGCAAGGTGCGCGCGGACGTGGAGGTGACTTGCTAC
ACGTATGAGGGTATTGATGCGGTGAAGGCGGCTTTGATGGCGGGGAAGGC
TGTCGGCGACGAGAGGACACCCATTCAAATCAAGCTCATCGCGCCCCCCC
GTTACGTTATGGACACCATGACGTCGGATAAAGACTTGGGGAAGTCCGTG
CTGGAAAAAGCTATTGACGTTGTCACCCACAACATCGTCGCGGCTGGCGG
AAAGCTCGAGGTAAAGATGGCGCCGAAGGCTGTCAGCCAGCGGGAAGAAT
CCGAGCTTCAGGCTATGCTTGAGCGTTTAGCTCTGGAGAACGAAGAAATA
GATGGAGATGCCCCTGAAGATGTTTGAGTAAAGATGGCGCCGAAGGCTGT
CAGCCAGCGGGAAGAATCCGAGCTTCAGGCTATGCTTGAGCGTTTAGCTC
TGGAGAACGAAGAAATAGATGGAGATGCCCCTGAAGATGTTTGA
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