mRNA_H-elongata_contig117812.1384.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117812.1384.1
Unique NamemRNA_H-elongata_contig117812.1384.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig117812.1384.1 vs. uniprot
Match: D8LF40_ECTSI (Putative two-pore calcium channel (Partial) (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF40_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 1.030e-22
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:   13 ILMVCADNYETLVNEPSRHPVYVPFVVMIIVVGSMFLLSLLLGVTYDVFIEHTTEQVH 186
            ILMVCADNYE LV++ S HP YVPF+VM+IVVGSMFLLSLLLGVTYDVFIEHTTEQV+
Sbjct:  298 ILMVCADNYEALVHDRSTHPAYVPFIVMVIVVGSMFLLSLLLGVTYDVFIEHTTEQVN 355
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BLAST of mRNA_H-elongata_contig117812.1384.1 vs. uniprot
Match: A0A6H5KF87_9PHAE (Cyclic nucleotide-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF87_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 1.940e-22
Identity = 48/61 (78.69%), Postives = 55/61 (90.16%), Query Frame = 1 
Query:   13 ILMVCADNYETLVNEPSRHPVYVPFVVMIIVVGSMFLLSLLLGVTYDVFIEHTTEQVHTSL 195
            ILMVCADNYE LV++ S HP YVPF+VM+IVVGSMFLLSLLLGVTYDVFIEHTTEQ  +++
Sbjct:  298 ILMVCADNYEALVHDRSTHPAYVPFIVMVIVVGSMFLLSLLLGVTYDVFIEHTTEQARSTV 358
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117812.1384.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LF40_ECTSI1.030e-2284.48Putative two-pore calcium channel (Partial) (Fragm... [more]
A0A6H5KF87_9PHAE1.940e-2278.69Cyclic nucleotide-binding domain-containing protei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117812contigH-elongata_contig117812:1429..1635 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score98.6
Seed ortholog evalue1.1e-18
Seed eggNOG ortholog2880.D8LF40
EggNOG free text desc.Ion transport protein
EggNOG OGs2E9E1@1,2SFS9@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal anchor
Exons1
Model size207
Cds size189
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.9079483-CDS-H-elongata_contig117812:1428..16171622929686.9079483-CDS-H-elongata_contig117812:1428..1617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117812 1429..1617 -
1691679119.1782317-CDS-H-elongata_contig117812:1428..16171691679119.1782317-CDS-H-elongata_contig117812:1428..1617Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117812 1429..1617 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.9275982-UTR-H-elongata_contig117812:1617..16351622929686.9275982-UTR-H-elongata_contig117812:1617..1635Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117812 1618..1635 -
1691679119.187267-UTR-H-elongata_contig117812:1617..16351691679119.187267-UTR-H-elongata_contig117812:1617..1635Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117812 1618..1635 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117812.1384.1prot_H-elongata_contig117812.1384.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117812 1429..1617 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117812.1384.1

>prot_H-elongata_contig117812.1384.1 ID=prot_H-elongata_contig117812.1384.1|Name=mRNA_H-elongata_contig117812.1384.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=63bp
MVCADNYETLVNEPSRHPVYVPFVVMIIVVGSMFLLSLLLGVTYDVFIEH
TTEQVHTSLLSFR
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mRNA from alignment at H-elongata_contig117812:1429..1635-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117812.1384.1 ID=mRNA_H-elongata_contig117812.1384.1|Name=mRNA_H-elongata_contig117812.1384.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=207bp|location=Sequence derived from alignment at H-elongata_contig117812:1429..1635- (Himanthalia elongata Himel1 dioecious)
ACGTCGCAAAGGATACTGATGGTGTGTGCGGATAACTACGAGACGCTGGT
GAACGAGCCCTCTCGGCATCCCGTTTACGTCCCTTTTGTGGTAATGATCA
TCGTGGTGGGGTCGATGTTCCTGCTGTCGTTGCTCCTCGGGGTGACGTAC
GACGTCTTCATCGAGCACACCACAGAACAGGTGCACACATCTCTGCTGAG
TTTTCGA
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Coding sequence (CDS) from alignment at H-elongata_contig117812:1429..1635-

>mRNA_H-elongata_contig117812.1384.1 ID=mRNA_H-elongata_contig117812.1384.1|Name=mRNA_H-elongata_contig117812.1384.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=378bp|location=Sequence derived from alignment at H-elongata_contig117812:1429..1635- (Himanthalia elongata Himel1 dioecious)
ATGGTGTGTGCGGATAACTACGAGACGCTGGTGAACGAGCCCTCTCGGCA
TCCCGTTTACGTCCCTTTTGTGGTAATGATCATCGTGGTGGGGTCGATGT
TCCTGCTGTCGTTGCTCCTCGGGGTGACGTACGACGTCTTCATCGAGCAC
ACCACAGAACAGGTGCACACATCTCTGCTGAGTTTTCGAATGGTGTGTGC
GGATAACTACGAGACGCTGGTGAACGAGCCCTCTCGGCATCCCGTTTACG
TCCCTTTTGTGGTAATGATCATCGTGGTGGGGTCGATGTTCCTGCTGTCG
TTGCTCCTCGGGGTGACGTACGACGTCTTCATCGAGCACACCACAGAACA
GGTGCACACATCTCTGCTGAGTTTTCGA
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