mRNA_H-elongata_contig117634.1377.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117634.1377.1
Unique NamemRNA_H-elongata_contig117634.1377.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: A0A843UCJ9_COLES (BED-type domain-containing protein n=4 Tax=Colocasia esculenta TaxID=4460 RepID=A0A843UCJ9_COLES)

HSP 1 Score: 55.5 bits (132), Expect = 1.180e-6
Identity = 26/55 (47.27%), Postives = 36/55 (65.45%), Query Frame = 1
Query:  115 PELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACANLQL 279
            P+LAYVA+RVLS   +A GCERNWS  G +   +  R+ S  + KLV+   N++L
Sbjct:  645 PDLAYVAIRVLSQTTSATGCERNWSTFGLIHTKQRNRLKSARLEKLVFCHYNMRL 699          
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: A0A7I8K756_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8K756_SPIIN)

HSP 1 Score: 55.1 bits (131), Expect = 1.580e-6
Identity = 30/94 (31.91%), Postives = 49/94 (52.13%), Query Frame = 1
Query:   28 GDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACANLQLMYREYVKGKE 309
            GDF  K+ +    +L    WW T G  G P LA +A+R+LS   +A GCER+      + + +   +  + +S L+Y   NL+L  R  +K ++
Sbjct:  582 GDFGRKMAIRARHTLLPGEWWSTYGG-GCPNLARLAIRILSQTCSARGCERSRIPFEQMHSQRKNHLEHQRLSDLIYVRYNLRLQQRHLLKNRQ 674          
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: A0A6G1D8I2_9ORYZ (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1D8I2_9ORYZ)

HSP 1 Score: 53.9 bits (128), Expect = 3.560e-6
Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = 1
Query:    7 QFARF--KAGDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACANLQLMYR---EYVKG 303
            QF+ F  K G FA     + A +     WWG+ G    P LA VA+RVLS   +++  ER WS    + + K  +++++T  KLV+  +NL+L+ R    Y KG
Sbjct:  214 QFSEFISKKGFFALPAAKQDAYNKDAIDWWGSYGSQ-TPNLAEVAMRVLSQPISSSSAERIWSTYEYIHSAKRNKLNAKTADKLVFIHSNLRLVSRVTESYKKG 316          
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: A0A6G1BLP3_9ORYZ (Uncharacterized protein n=1 Tax=Oryza meyeriana var. granulata TaxID=110450 RepID=A0A6G1BLP3_9ORYZ)

HSP 1 Score: 53.9 bits (128), Expect = 3.990e-6
Identity = 37/104 (35.58%), Postives = 56/104 (53.85%), Query Frame = 1
Query:    7 QFARF--KAGDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACANLQLMYR---EYVKG 303
            QF+ F  K G FA     + A +     WWG+ G    P LA VA+RVLS   +++  ER WS    + + K  +++++T  KLV+  +NL+L+ R    Y KG
Sbjct:  580 QFSEFISKKGFFALPAAKQDAYNKDAIDWWGSYGSQ-TPNLAEVAMRVLSQPISSSSAERIWSTYEYIHSAKRNKLNAKTADKLVFIHSNLRLVSRVTESYKKG 682          
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: UPI000DF4DD00 (uncharacterized protein LOC112899548 n=1 Tax=Panicum hallii TaxID=206008 RepID=UPI000DF4DD00)

HSP 1 Score: 52.4 bits (124), Expect = 1.140e-5
Identity = 30/85 (35.29%), Postives = 45/85 (52.94%), Query Frame = 1
Query:   22 KAGDFAGKVFLEQARS--LTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACAN 270
            K G FA KV     +    + A WW   G   +P L   A+R+LS++ +A+GCERNWS    +   K  R++ E + +LV+   N
Sbjct:   82 KVGHFAKKVAQAGCKDYDFSLAKWWSNYGTQ-VPTLQKFAIRILSLISSASGCERNWSCFEGIHTKKRNRLTCERVEQLVFVRFN 165          
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: UPI001CF7C3F7 (uncharacterized protein LOC123019268 n=1 Tax=Varanus komodoensis TaxID=61221 RepID=UPI001CF7C3F7)

HSP 1 Score: 52.4 bits (124), Expect = 1.390e-5
Identity = 27/96 (28.12%), Postives = 52/96 (54.17%), Query Frame = 1
Query:    1 MAQFARFKAGD--FAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACANLQLM 282
            M   A ++A +  ++  +    + +++   WW   G     +L+ VA+R+LS+ P AA C++NW    ++ A K  R+++E  +KL+    NL L+
Sbjct:  529 MTDIAEYRAKEKLWSQDIIWRASENVSPLTWWK--GYCNTRQLSRVAIRILSIPPTAASCQKNWKAFNSINAKKRNRLTNERTAKLISVSQNLSLL 622          
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: UPI001CB8B12A (uncharacterized protein LOC122603007 n=1 Tax=Erigeron canadensis TaxID=72917 RepID=UPI001CB8B12A)

HSP 1 Score: 52.0 bits (123), Expect = 1.820e-5
Identity = 33/96 (34.38%), Postives = 51/96 (53.12%), Query Frame = 1
Query:    7 QFARF--KAGDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACANLQLMYR 288
            Q+A F  K G +A K     A ++    WW T G    P+LA VA++VLS   +++  ERNWS    +   K  R++S+   KLV+  +N++   R
Sbjct:  330 QYAFFHTKKGIYAKKTTQADAMTMDPIDWWSTYGS-ATPQLAEVAIKVLSQPISSSSAERNWSTYSHIHNVKRNRLNSKRADKLVFIHSNIRCQSR 424          
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: UPI000B426496 (uncharacterized protein LOC8079746 n=1 Tax=Sorghum bicolor TaxID=4558 RepID=UPI000B426496)

HSP 1 Score: 51.6 bits (122), Expect = 2.580e-5
Identity = 34/104 (32.69%), Postives = 55/104 (52.88%), Query Frame = 1
Query:    7 QFARF--KAGDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACANLQLMYR---EYVKG 303
            QF  F  K G +A     + A ++    WW T G    P+LA +A+++LS   +++  ER WS    V + K  +++++   KLVY  +NL+L+ R    Y KG
Sbjct:  570 QFTHFISKKGMYALSSVKQDAYNMDAIDWWETYGSE-TPDLAAIAIKILSQPISSSSAERIWSTYEYVHSAKRNKLNAKNADKLVYIHSNLRLLSRATESYKKG 672          
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Match: A0A803N423_CHEQI (Transmembrane protein 147 n=1 Tax=Chenopodium quinoa TaxID=63459 RepID=A0A803N423_CHEQI)

HSP 1 Score: 51.6 bits (122), Expect = 2.610e-5
Identity = 36/107 (33.64%), Postives = 56/107 (52.34%), Query Frame = 1
Query:    7 QFARFKA-----GDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLSMVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACANLQLMYREYVKGKEA 312
            Q A+F+A     G  A K+    A +++  +WW T G    PELA +A++VLS   +++  ER WS    +   K  R++S    KLV+   N++L+ R     KEA
Sbjct:  519 QLAKFQAKEGIFGSLAAKI---DAVTMSPISWWSTYGSEA-PELAEIAIKVLSQPISSSSAERVWSTYSFIHNAKRNRLNSVRADKLVFIHCNIRLISRFTSYYKEA 621          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117634.1377.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A843UCJ9_COLES1.180e-647.27BED-type domain-containing protein n=4 Tax=Colocas... [more]
A0A7I8K756_SPIIN1.580e-631.91Hypothetical protein n=2 Tax=Spirodela intermedia ... [more]
A0A6G1D8I2_9ORYZ3.560e-635.58Dimer_Tnp_hAT domain-containing protein n=1 Tax=Or... [more]
A0A6G1BLP3_9ORYZ3.990e-635.58Uncharacterized protein n=1 Tax=Oryza meyeriana va... [more]
UPI000DF4DD001.140e-535.29uncharacterized protein LOC112899548 n=1 Tax=Panic... [more]
UPI001CF7C3F71.390e-528.13uncharacterized protein LOC123019268 n=1 Tax=Varan... [more]
UPI001CB8B12A1.820e-534.38uncharacterized protein LOC122603007 n=1 Tax=Erige... [more]
UPI000B4264962.580e-532.69uncharacterized protein LOC8079746 n=1 Tax=Sorghum... [more]
A0A803N423_CHEQI2.610e-533.64Transmembrane protein 147 n=1 Tax=Chenopodium quin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117634contigH-elongata_contig117634:680..997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score63.9
Seed ortholog evalue5.1e-08
Seed eggNOG ortholog6412.HelroP160342
EggNOG free text desc.hAT family C-terminal dimerisation region
EggNOG OGs2E3R9@1,2SARV@2759,3AEAR@33154,3BW16@33208
COG Functional cat.S
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size318
Cds size318
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.4306946-CDS-H-elongata_contig117634:679..9971622929686.4306946-CDS-H-elongata_contig117634:679..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117634 680..997 -
1691679119.037768-CDS-H-elongata_contig117634:679..9971691679119.037768-CDS-H-elongata_contig117634:679..997Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117634 680..997 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117634.1377.1prot_H-elongata_contig117634.1377.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117634 680..997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117634.1377.1

>prot_H-elongata_contig117634.1377.1 ID=prot_H-elongata_contig117634.1377.1|Name=mRNA_H-elongata_contig117634.1377.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=106bp
MAQFARFKAGDFAGKVFLEQARSLTGAAWWGTLGKMGLPELAYVAVRVLS
MVPAAAGCERNWSLMGAVTAGKHARVSSETMSKLVYACANLQLMYREYVK
GKEACE
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mRNA from alignment at H-elongata_contig117634:680..997-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117634.1377.1 ID=mRNA_H-elongata_contig117634.1377.1|Name=mRNA_H-elongata_contig117634.1377.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=318bp|location=Sequence derived from alignment at H-elongata_contig117634:680..997- (Himanthalia elongata Himel1 dioecious)
ATGGCCCAGTTTGCGAGGTTCAAGGCAGGTGACTTTGCGGGTAAGGTTTT TCTCGAGCAAGCAAGGTCTCTCACGGGAGCGGCGTGGTGGGGTACACTAG GCAAGATGGGCTTGCCGGAGCTGGCGTACGTGGCCGTTCGTGTTCTCTCG ATGGTGCCAGCCGCTGCTGGGTGTGAGCGGAACTGGAGCCTGATGGGGGC TGTCACCGCCGGCAAGCACGCGCGCGTGAGCTCTGAAACCATGTCGAAGC TGGTTTACGCGTGCGCCAACCTTCAGCTGATGTACCGCGAGTACGTCAAG GGCAAGGAAGCATGCGAA
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Coding sequence (CDS) from alignment at H-elongata_contig117634:680..997-

>mRNA_H-elongata_contig117634.1377.1 ID=mRNA_H-elongata_contig117634.1377.1|Name=mRNA_H-elongata_contig117634.1377.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=636bp|location=Sequence derived from alignment at H-elongata_contig117634:680..997- (Himanthalia elongata Himel1 dioecious)
ATGGCCCAGTTTGCGAGGTTCAAGGCAGGTGACTTTGCGGGTAAGGTTTT
TCTCGAGCAAGCAAGGTCTCTCACGGGAGCGGCGTGGTGGGGTACACTAG
GCAAGATGGGCTTGCCGGAGCTGGCGTACGTGGCCGTTCGTGTTCTCTCG
ATGGTGCCAGCCGCTGCTGGGTGTGAGCGGAACTGGAGCCTGATGGGGGC
TGTCACCGCCGGCAAGCACGCGCGCGTGAGCTCTGAAACCATGTCGAAGC
TGGTTTACGCGTGCGCCAACCTTCAGCTGATGTACCGCGAGTACGTCAAG
GGCAAGGAAGCATGCGAAATGGCCCAGTTTGCGAGGTTCAAGGCAGGTGA
CTTTGCGGGTAAGGTTTTTCTCGAGCAAGCAAGGTCTCTCACGGGAGCGG
CGTGGTGGGGTACACTAGGCAAGATGGGCTTGCCGGAGCTGGCGTACGTG
GCCGTTCGTGTTCTCTCGATGGTGCCAGCCGCTGCTGGGTGTGAGCGGAA
CTGGAGCCTGATGGGGGCTGTCACCGCCGGCAAGCACGCGCGCGTGAGCT
CTGAAACCATGTCGAAGCTGGTTTACGCGTGCGCCAACCTTCAGCTGATG
TACCGCGAGTACGTCAAGGGCAAGGAAGCATGCGAA
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