mRNA_H-elongata_contig11760.1375.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11760.1375.1
Unique NamemRNA_H-elongata_contig11760.1375.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A6H5K307_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K307_9PHAE)

HSP 1 Score: 215 bits (547), Expect = 3.930e-60
Identity = 136/399 (34.09%), Postives = 216/399 (54.14%), Query Frame = 1
Query:   28 ELRYLDAEQAFLKANIDAETYIEIPEKYQEFSGTAGRLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGR---QGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEYSLL*AV-KEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSL 1212
            EL + D +QAF++A ++   ++ +PE     SG   +LNK++YGL QA R W   +   + A+GFEQ   D C+FR V   E  ++ VVHV+DI +    +   D+F  +LG+ + +K +G+ + Y GC+   +R+A  + I Q  Y E + E + V+    IP    +PT  K  +    +   E    P+R  VG L+W A + RPD A++ RAV R+  +P   H KA ++F+ Y + T  +GI++ R    G  L    Y D   R     R   SG V M A  AI+  S+ +   +  T+ AEY  +  + KE++ LRQV +FM P      + ++EDN+G I++  +  ++  +K+IDV+HH +R     + V   +V S+ QHAD LTK+L
Sbjct:  213 ELCHFDIDQAFVRAPLNENIFMRMPEGCGALSGKIVQLNKSLYGLRQASREWYALLKKCLLALGFEQCMADSCLFRFVEGGEVVLLLVVHVDDIFAVGTKERC-DQFGKDLGEYVPVKSLGELKWYSGCYYEGDREAGRMTISQQTYTEELGERYGVEWGGGIP----LPTTWKLWDFDADEPSVEH---PFRALVGSLLWIALLTRPDIANSVRAVARYSGAPKLIHWKAALSFLGYAVRTSSFGISFQRGTVSGFSLITFVYADYASRAA--DRRSESGGVVMCAGGAIAWFSKTQKCVTLSTTQAEYVAMADMGKEILFLRQVWRFMLPKELRPCIPLYEDNEGAIQIAKHPISNSNSKHIDVRHHFLRQLVDEKEVEIIHVASQYQHADSLTKAL 601          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A6G0MK94_9STRA (Reverse transcriptase Ty1/copia-type domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=A0A6G0MK94_9STRA)

HSP 1 Score: 202 bits (514), Expect = 5.490e-57
Identity = 135/417 (32.37%), Postives = 221/417 (53.00%), Query Frame = 1
Query:    1 LETAAAKNGELRYLDAEQAFLKANIDAETYIEIPEKYQEFSGTAGR---------LNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARN--IPAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITY-GRQGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSL 1212
            L    A+  E+   D + AFL   ++ E Y+E+PE  +E    A           L +++YGL QA R WN  I   + ++GFE  + DPCV+ +  + E   +  ++V+D+L  ++ +A +      + +  ++K++G  R  +G  I  + + R L I Q  Y ES+++ F  + A+    P   GV   +KADE +  ++K ++   PYR  VG LM+ A   RPD +     + RF E+PG  H  A I  ++YLL TKD GI Y G  G +L  EAY+D+ +    D R  VSG + ML    +   S  +   +  +++AEY +L   VKE + +R++ + +    +VGA+ ++EDN G + L  N     RTK+ID+++H +R+   S  V   YV +++Q AD +TK L
Sbjct:    2 LAKCGAEGMEIDQCDVDTAFLYGKMEEEIYMELPEGLRELLDLAEAEGEDDVVCMLLQSLYGLKQASRVWNETIDKHLKSMGFEPADADPCVYTRG-EGEGECIVCLYVDDMLIASRQKAVIASVKAGIAEKFRIKDLGRARFILGIEIDYDMERRTLGISQKAYTESIIKKFGQENAKPWLTPLEPGVQ-LTKADEPQTEEDKAKMKSKPYRSLVGSLMYLACGTRPDISVAVAKLSRFLENPGEKHWDAGIKVVRYLLKTKDVGIVYDGLLGTQL--EAYSDANWAGNRDDRRSVSGMLLMLCGAPVVWRSTFQKTVALSSTEAEYMALSDCVKECVWMRRLLKDIGAE-QVGAMVIYEDNQGAMALAKNVGYQARTKHIDIRYHFIREKVVSSEVELEYVDTKNQLADFMTKGL 413          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A085MUK1_9BILA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Trichuris suis TaxID=68888 RepID=A0A085MUK1_9BILA)

HSP 1 Score: 194 bits (492), Expect = 2.220e-53
Identity = 130/422 (30.81%), Postives = 218/422 (51.66%), Query Frame = 1
Query:    1 LETAAAKNGELRYLDAEQAFLKANIDAETYIEIPEKYQEFSGTAGRLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNI--PAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITY--------GRQGCR---LCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSLDMQR 1224
            L  AA ++ E+   D + AFL   ID   +++ P  Y + +G   +L + IYGL QA R WN +  D + ++   +   D CV+    +++  ++  ++V+D L     + T+     +L    ++  +GD   Y+G  I R+R+ + + I Q  Y+E ++E F+V+  + +  P  S +   SK      P E  E+S+ PY+ AVG LM+  T  RPD +     V +F E+PGPAH KAV    +Y+  TK+  + +        G++G +   L + A+ DS +   +D+R   SG V +L    +S  +R++   +  T +AEY ++  A KE+   RQ Q F   + +   + +  DN G I L TN    RRTK+IDV++H +R    + T+   Y+   +Q AD+LTK L  +R
Sbjct:   40 LAMAAEEDLEVLQFDVKTAFLHGIIDEVVFMDQPPHYDDQTGRVCKLQRAIYGLKQAPRAWNKRFHDFLLSLNLRRAEADQCVYVSEKESDERVILTLYVDDGLICCSEKGTLSTMVMKLMNEFEI-TVGDPSYYIGLEIHRDRRNKSIVIGQKAYIERILEKFNVQDCKPVACPWESSMK-HSKGMSPTAPDESKEMSRIPYKAAVGSLMFLMTCSRPDISFETSKVSQFSENPGPAHWKAVKRIFRYIKGTKELRLVFRSKSEGDKGQEGTKCDSLQLTAFCDSDWPGDIDSRRSTSGYVLILCGGPVSWSTRVQTGIAQSTVEAEYVAISEATKEIKWFRQ-QLFDLGTEQRKPMCLLTDNQGAICLTTNPQFHRRTKHIDVRYHFIRAEQENGTITVDYISGHEQPADMLTKGLPPRR 458          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A5S6QHL1_TRIMR (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QHL1_TRIMR)

HSP 1 Score: 190 bits (483), Expect = 2.830e-50
Identity = 126/422 (29.86%), Postives = 215/422 (50.95%), Query Frame = 1
Query:    1 LETAAAKNGELRYLDAEQAFLKANIDAETYIEIPEKYQEFSGTAGRLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNI--PAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITY--------GRQGCR---LCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSLDMQR 1224
            L  AA ++ E+   D + AFL   +D   +++ P  Y + +G   +L + IYGL QA R WN +  D + ++   +   D CV+      +  ++  ++V+D L     +  +     +L +  ++  +GD   Y+G  I R+R+ + + I Q  Y+E ++E F+++  + +  P  S +   SK      P E  E+S+ PY+ AVG LM+  T  RPD +     V +F E+PGPAH KAV   ++Y+  TK+  + Y        G++G +   L ++A+ DS +   +D+R   SG V +L     S  +R++   +  T +AEY ++  A KE+   RQ+   +    R     +  DN G I L TN    RRTK+IDV++H +R    + ++   Y+   +Q AD+LTK L + R
Sbjct:  303 LAIAAEEDLEVLQFDVKTAFLHGTLDELVFMDQPPHYDDQTGRVCKLQRAIYGLKQAPRAWNKRFHDFLLSLNLGRTQADQCVYVSKKGLDERVILTLYVDDGLICCSEKGALSSIVKKLMKEFEI-TVGDPSYYIGLEIHRDRRNKSIAIGQKAYIERILEKFNMQDCKPVACPWESSMK-LSKEMSPTTPDESKEMSRIPYKAAVGSLMFLMTSSRPDISFETSKVSQFSENPGPAHWKAVKRILRYIKGTKELRLVYRSKSQSDKGQEGIKSESLQLKAFCDSDWAGDIDSRRSTSGYVLILCGGPDSWSTRVQRGIAQSTVEAEYVAISEATKEIKWFRQLLLDLGRDQRKPTC-LLSDNQGAICLTTNPQFHRRTKHIDVRYHFIRAEQENGSITVDYISGHEQPADMLTKGLPLSR 721          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A182GAG1_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GAG1_AEDAL)

HSP 1 Score: 181 bits (460), Expect = 1.780e-49
Identity = 110/399 (27.57%), Postives = 207/399 (51.88%), Query Frame = 1
Query:   40 LDAEQAFLKANIDAETYIEIPEKYQEFSGTAGRLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNI--PAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGRQGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSLDMQRF 1227
            +D + AFL  ++  + Y+ +P+  +   G   +L K++YGL Q+ RCWN ++   +  +GF + + D C++ K    +  ++ V++V+D+L   +   ++ R   EL    K+ + G+   ++G  +M NR+   L++ Q   +  +++ FD+    +   P   G+            K  G  +K PYRE +G +M+T   +RPD       + RF ++P   H + +   ++YL  T+   + Y R+     +  + D+ +    + R  VSG +  +    +S  S+ +   ++ +S+AEY +L  A  E I L  + + ++  + V  V ++EDN G I +  N+  ++R+K+IDVKHH +RD   +  ++   V S+DQ AD+LTK+LD  RF
Sbjct:    1 MDVKTAFLYGDLKEDIYMAVPDGVKANQGMVCKLQKSLYGLKQSPRCWNERLNGQLLKMGFTRSSHDYCLYTKCTPGDE-LIIVIYVDDLLIAGRKLTSIVRLKKELSAVFKMTDCGEANYFLGMKLMYNREEGTLRLSQEAQVTKILQRFDMVNCNSCKTPMEKGLQL----------KRDGPSTKEPYREVLGSMMYTMLCVRPDICYPVSYMGRFQQNPADHHWQTLKRIVRYLQGTQGLCLEYRREEAAEPLVGFADADWAADTEDRKSVSGYLFKVFGATVSWSSKKQTTVATSSSEAEYVALSAAASEAIWLTGILEDLK--ITVKPVIIYEDNRGCIGMAKNRE-TKRSKHIDVKHHFLRDHVEAGRLQIEPVSSQDQLADMLTKALDTSRF 385          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A6S7HNY1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HNY1_PARCT)

HSP 1 Score: 187 bits (475), Expect = 2.090e-48
Identity = 122/409 (29.83%), Postives = 210/409 (51.34%), Query Frame = 1
Query:   28 ELRYLDAEQAFLKANIDAETYIEIPEKY--QEFSGTAGRLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEA----YMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVK--KARNIPAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGRQGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSLDMQRF 1227
            E+  +D + AFL+  +D   +++ PE Y  QE      +LN++IYGL QA RCWN+ I   + + G+ + N DPC++ K +  +     +++  ++V+DIL  +     + +  + L +  ++++MG+    +G  + RNR+AR L I+Q  Y+E +++ F ++  KA + P   G   F    E   P +  E     Y+ A+G L +     RPD A+    + ++   PG  H + V   ++Y+  T   G+T+   G    +  Y D+ +   ++TR   SG V  +    IS CS+ +   S  T++AEY +L  A +E + LR++   +     V +  +FEDN G I+L  N     RTK+IDV  H +R+      V   Y R+E+  AD++TK+L    F
Sbjct:  920 EISQMDVKTAFLQGELDEVIFMKQPEGYVDQERPDHVCKLNRSIYGLKQAARCWNSAIDTFLISNGYTKSNADPCIYIKSIKRKNGKIDFVILALYVDDILWFSNNTEMLKKEKEALAKRFQVEDMGEVSYVLGMSVKRNREARTLTINQPKYLEGVLKRFGMQECKAVSTPLEPG-RKFESLSENDTPIDVRE-----YQMAIGCLTYATNATRPDLAAAVGILSKYMARPGKDHWQGVKRVLRYVKGTLHSGLTFTAHGNNPVLYGYADADWGGDVETRRSTSGYVFQIQNNTISWCSKRQASVSRSTTEAEYIALSTACQEAVWLRRLLSDIGLKQDVPST-IFEDNQGAIELSKNPKFHNRTKHIDVSFHFIREQVNRNIVCVKYGRTENMLADVMTKALPKVSF 1321          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A151SSH9_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151SSH9_CAJCA)

HSP 1 Score: 179 bits (454), Expect = 2.220e-48
Identity = 121/403 (30.02%), Postives = 210/403 (52.11%), Query Frame = 1
Query:   31 LRYLDAEQAFLKANIDAETYIEIPEKYQEFSGTAGRLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPAMSGVPT-FSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGR--QGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSLDMQRF 1227
            L  LD + AFL  ++D   Y+E PE +         L K++YGL Q+ R W  +  D +  + F + + D CV+  + + +  +  +++V+DIL  ++ +  ++    +L    ++K +G  R  +G  I+RN+    L++ Q +YM+ +VE F + K++++    G  T  S++    +  E+  +   PY   VG +M+     RPD A     V RF  +PG AH + +   ++Y+  T + G+ Y +  QG    +E + D+ +  C+DTR  +SG V  L   A+S  + ++ V +  T++AEY +L   VKE + L+ +    E  +    V +  D+   I L  ++    RTK+IDVKHH +R+   + TVR   + SED  AD+LTKSL   +F
Sbjct:   11 LEQLDVKTAFLHGDLDETIYMEQPEGFAVDQRVC-LLQKSLYGLKQSPRQWYKRFDDFLMRMKFRRCSYDSCVYI-LSEEQDCLYLLLYVDDILVASRNKQIINELKMKLSSEFEMKNLGVARRILGVDIIRNQTKGVLRLTQQVYMKKVVERFRMHKSKSVGTPLGHHTKLSRSQAPVSEDERRRMDVVPYASGVGSIMYGMVCTRPDLAHAVSVVSRFMGNPGQAHWETLKWMLRYVNGTLESGLLYRKRHQG-GAAIEGFVDADYAGCVDTRKSLSGYVFTLFGTAVSWKANLQSVVALSTTEAEYIALAEGVKEGLWLKGMLN--ELGIEQECVQIHCDSQSAIHLANHQMYHERTKHIDVKHHFIREVVETGTVRIVKIASEDNPADMLTKSLPRCKF 408          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A7M6DPI8_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M6DPI8_9CNID)

HSP 1 Score: 186 bits (472), Expect = 5.140e-48
Identity = 114/409 (27.87%), Postives = 215/409 (52.57%), Query Frame = 1
Query:   28 ELRYLDAEQAFLKANIDAETYIEIPEKY--QEFSGTAGRLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVV---DAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPAMSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITY-GRQGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSLDMQRFYK 1233
            EL  +D + AFL  +++ + +++ PE +  ++    A +L K+IYGL Q+ RCWN K+ + +   GF + + DPC++ K +   D    ++  V+V+D+L        +     +LG+  ++++  +    +G  + R+RK R L IDQ+ ++ S++  F++ + +  P  + +    K ++  + +E  ++    Y+ A+G L + +   RPD ++    + +    PG  H   V   ++YL  T D+G+ Y G +   + +  + D+ +   +DTR   SG V  +    +S  S+ + + +   ++AEY +L  A +EVI LR + + M+   +     +FEDN G I+L  N+    RTK+ID+K H +RDA   + +   Y  +++  ADLLTK L   +F K
Sbjct:  882 ELHQMDVKTAFLNGDLEEDIFMKQPEGFINRDNPNMACKLQKSIYGLKQSARCWNEKMDEFLKESGFTRNDADPCIYHKQITKGDKSFTLIVAVYVDDLLIACNNIQILREQKQKLGERFEMEDKSEVHFILGMQVKRDRKNRRLTIDQNAFLSSVLNRFNMNECK--PVATPLEPSMKFEKLADDEEIVKLKD--YQSAIGCLTYASIGTRPDISAAVGVLSQHMSKPGKQHWIGVKRVLRYLKGTLDYGLIYEGSESGDILLHGFADADWAGDIDTRKSTSGYVFKVGNSTVSWKSKRQSIVALSKTEAEYVALSQATQEVIWLRTLFKGMDFE-QTDPTKMFEDNQGAIELAKNQPNHSRTKHIDIKFHHVRDAVAKKVIDLEYCPTDEMIADLLTKGLPRPQFEK 1285          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: A0A0A9Z147_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9Z147_LYGHE)

HSP 1 Score: 177 bits (448), Expect = 7.060e-48
Identity = 110/367 (29.97%), Postives = 195/367 (53.13%), Query Frame = 1
Query:  136 RLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPA-MSGVPTFSKADETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGRQGCRLC-MEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSLDMQRF 1227
            RL K+IYGL QA R WN K+   + + G  Q   D CV+ K+ D ++ ++  V V+D+L  +  +    +    L ++ K+ ++G+ +  +G  + R+R+A+ + I Q  Y+E M++ F +  A  +   MS    FSK    +   E+  + K PY+EA+G L++ A + RPD A    ++ RF  +PG AH   V    +YL  T  + + +   G +   +  Y D+ + +  D R  V+G + +     IS C++ +   +  T++AEY ++  A +E + LR + + +E S ++    +F DN G   L  N     RTK+IDV+HH +R+   ++ +   Y+ +    AD LTK+LD+++F
Sbjct:    8 RLRKSIYGLKQASRIWNQKLDLVLQSFGLTQSKFDSCVYFKI-DGKSMLIVAVWVDDLLIFSNDRKLKKQVKLRLTRSFKMTDLGEAKSVLGFQLTRDRQAKRIWISQQHYIEEMLKRFHMDAANPVTTPMSNSEKFSKNQAPQTADERERMRKIPYQEAIGSLLFAAQVSRPDIAFAISSLSRFNNNPGMAHWTGVKRVFRYLRGTSSYKLQF--DGLKAGPIHGYCDADWASDPDERRSVTGYIFVKCNGPISWCTKRQPTVALSTTEAEYMAMSSAAQEGLWLRGLSEEIEQSSQI-PTQIFCDNQGARNLALNGAYQPRTKHIDVRHHFLRERIQAKLLAFTYIPTNRMVADSLTKALDVEKF 370          
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Match: G8DCY4_PHAVU (Putative gag/pol polyprotein n=1 Tax=Phaseolus vulgaris TaxID=3885 RepID=G8DCY4_PHAVU)

HSP 1 Score: 185 bits (470), Expect = 9.990e-48
Identity = 124/410 (30.24%), Postives = 219/410 (53.41%), Query Frame = 1
Query:    1 LETAAAKNGELRYLDAEQAFLKANIDAETYIEIPEKY--QEFSGTAGRLNKTIYGLIQARRCWNNKIGDGMTAVGFEQGNEDPCVFRKVVDAEAYMVFVVHVEDILSHAKPQATMDRFADELGQTLKLKEMGDER*YMGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPAMSGVPTFSKADETRNPK---EKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGPAHKKAVINFMQYLLHTKDWGITYGRQGCRLCMEAYTDSTFRTCLDTRCLVSGAVSMLAKRAISRCSRMKYVKSSGTSDAEY-SLL*AVKEVICLRQVQQFMEPSMRVGAVNVFEDNDGGIKLVTNKHASRRTKYIDVKHHLMRDASGSRTVRAAYVRSEDQHADLLTKSL 1212
            L  AA  + E+  +D + AFL  +++ E Y++ P+ +  +       RL K++YGL QA R W  K    M   G+++   D CVF K    + +++ +++V+DIL   K  + ++R   +L ++  +K+MG  +  +G  IMR+R+ ++L + Q  Y++ +++ F ++ A+ +   + + T  K    ++P    EK ++ + PY  AVG LM+     RPD A     V RF  +PG  H  AV   ++YL  T    + +G  G +  +  YTDS     +D+R   SG V   A  A++  SR++   +  T++AE+ ++  A KE++ ++++ Q  E S       +F D+   I L  N     R+K+IDV++H +RDA  +R +  A V ++D  AD++TKSL
Sbjct:  852 LSLAATLDLEVEQMDVKTAFLHGDLEEEIYMKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKKFESVMCEQGYKKTTSDHCVFVKKFANDDFIILLLYVDDILIVGKDISMINRLKKQLSESFAMKDMGAAKQILGIRIMRDRQEKKLWLSQENYVKRVLQRFQMENAKVVS--TPLATHFKLSTKQSPSYEYEKSDMQRIPYASAVGSLMYAMVCTRPDIAHVVGTVSRFMSNPGREHWNAVKWILRYLRGTTCLRLCFG--GDKPTLVGYTDSDMGGDIDSRRSTSGYVIKFAGGAVAWQSRLQKCVALSTTEAEFIAITEACKELLWVKKLLQ--ELSFVQDKYLLFCDSQSAIYLGKNSTFHSRSKHIDVRYHWIRDALEARLLELAKVHTDDNCADMMTKSL 1255          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11760.1375.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K307_9PHAE3.930e-6034.09Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6G0MK94_9STRA5.490e-5732.37Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A085MUK1_9BILA2.220e-5330.81Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5S6QHL1_TRIMR2.830e-5029.86Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182GAG1_AEDAL1.780e-4927.57Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6S7HNY1_PARCT2.090e-4829.83Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A151SSH9_CAJCA2.220e-4830.02Retrovirus-related Pol polyprotein from transposon... [more]
A0A7M6DPI8_9CNID5.140e-4827.87Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A0A9Z147_LYGHE7.060e-4829.97Retrovirus-related Pol polyprotein from transposon... [more]
G8DCY4_PHAVU9.990e-4830.24Putative gag/pol polyprotein n=1 Tax=Phaseolus vul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11760contigH-elongata_contig11760:3986..5224 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score99.0
Seed ortholog evalue2.5e-18
Seed eggNOG ortholog164328.Phyra85763
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QGIS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size1239
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11760.1375.1prot_H-elongata_contig11760.1375.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11760 4391..4945 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.2723007-UTR-H-elongata_contig11760:3985..43901622929686.2723007-UTR-H-elongata_contig11760:3985..4390Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11760 3986..4390 +
1691679118.9851248-UTR-H-elongata_contig11760:3985..43901691679118.9851248-UTR-H-elongata_contig11760:3985..4390Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11760 3986..4390 +
1622929686.3019974-UTR-H-elongata_contig11760:4945..52241622929686.3019974-UTR-H-elongata_contig11760:4945..5224Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11760 4946..5224 +
1691679119.0066252-UTR-H-elongata_contig11760:4945..52241691679119.0066252-UTR-H-elongata_contig11760:4945..5224Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11760 4946..5224 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929686.2856343-CDS-H-elongata_contig11760:4390..49451622929686.2856343-CDS-H-elongata_contig11760:4390..4945Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11760 4391..4945 +
1691679118.998129-CDS-H-elongata_contig11760:4390..49451691679118.998129-CDS-H-elongata_contig11760:4390..4945Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11760 4391..4945 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11760.1375.1

>prot_H-elongata_contig11760.1375.1 ID=prot_H-elongata_contig11760.1375.1|Name=mRNA_H-elongata_contig11760.1375.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=185bp
MGCHIMRNRKARELKIDQHLYMESMVEMFDVKKARNIPAMSGVPTFSKAD
ETRNPKEKGEISKCPYREAVGVLMWTATMIRPDFASTERAVVRFCESPGP
AHKKAVINFMQYLLHTKDWGITYGRQGCRLCMEAYTDSTFRTCLDTRCLV
SGAVSMLAKRAISRCSRMKYVKSSGTSDAEYSLL*
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mRNA from alignment at H-elongata_contig11760:3986..5224+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11760.1375.1 ID=mRNA_H-elongata_contig11760.1375.1|Name=mRNA_H-elongata_contig11760.1375.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1239bp|location=Sequence derived from alignment at H-elongata_contig11760:3986..5224+ (Himanthalia elongata Himel1 dioecious)
TTAGAGACGGCAGCGGCCAAGAACGGAGAGCTGCGTTATCTCGACGCGGA GCAGGCATTCTTGAAGGCGAACATTGACGCGGAAACATACATTGAGATCC CTGAAAAATACCAGGAGTTTTCGGGGACAGCGGGACGGCTAAACAAGACC ATTTATGGACTCATACAGGCGAGGAGGTGCTGGAACAACAAGATTGGCGA CGGCATGACGGCGGTTGGATTCGAGCAGGGAAACGAAGATCCGTGCGTGT TCCGTAAGGTCGTTGACGCCGAGGCGTATATGGTGTTTGTCGTACACGTG GAGGACATTCTTTCTCACGCCAAACCCCAAGCGACGATGGATAGATTCGC GGATGAGCTTGGACAAACGCTCAAATTAAAGGAAATGGGCGACGAGAGGT AGTACATGGGCTGTCACATCATGAGGAACCGCAAGGCGCGCGAGTTGAAG ATCGACCAGCACTTGTACATGGAGTCGATGGTGGAAATGTTTGACGTCAA GAAGGCAAGAAATATACCGGCTATGTCGGGGGTGCCAACATTTTCAAAGG CGGACGAAACGCGAAACCCGAAGGAGAAGGGGGAAATAAGTAAGTGTCCA TACCGGGAGGCAGTGGGGGTGCTTATGTGGACGGCCACGATGATACGGCC GGACTTTGCGAGCACAGAACGCGCTGTGGTCAGGTTCTGTGAAAGCCCTG GGCCGGCGCATAAGAAGGCAGTGATTAATTTCATGCAGTATCTCCTTCAC ACGAAGGATTGGGGGATTACATACGGTCGACAGGGCTGTCGACTCTGCAT GGAAGCATACACCGACTCGACCTTCCGAACCTGCCTGGATACTAGATGTT TGGTGTCGGGTGCGGTGTCGATGCTAGCGAAGAGGGCGATCAGCAGGTGC TCAAGGATGAAATACGTGAAATCATCGGGTACCTCGGATGCAGAGTACTC TTTATTATAGGCAGTAAAGGAGGTTATATGTTTGAGACAGGTTCAGCAGT TCATGGAACCGTCAATGAGGGTCGGTGCAGTAAATGTGTTTGAGGATAAT GATGGGGGCATAAAGTTGGTCACCAACAAGCATGCTAGTCGTAGGACAAA GTACATTGATGTGAAACATCATCTGATGAGAGACGCGTCTGGCTCGCGAA CGGTTAGAGCAGCATATGTGAGGTCGGAAGATCAGCACGCGGACTTGCTC ACCAAGTCGCTAGACATGCAGAGGTTTTACAAGCACGCA
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Coding sequence (CDS) from alignment at H-elongata_contig11760:3986..5224+

>mRNA_H-elongata_contig11760.1375.1 ID=mRNA_H-elongata_contig11760.1375.1|Name=mRNA_H-elongata_contig11760.1375.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1110bp|location=Sequence derived from alignment at H-elongata_contig11760:3986..5224+ (Himanthalia elongata Himel1 dioecious)
ATGGGCTGTCACATCATGAGGAACCGCAAGGCGCGCGAGTTGAAGATCGA
CCAGCACTTGTACATGGAGTCGATGGTGGAAATGTTTGACGTCAAGAAGG
CAAGAAATATACCGGCTATGTCGGGGGTGCCAACATTTTCAAAGGCGGAC
GAAACGCGAAACCCGAAGGAGAAGGGGGAAATAAGTAAGTGTCCATACCG
GGAGGCAGTGGGGGTGCTTATGTGGACGGCCACGATGATACGGCCGGACT
TTGCGAGCACAGAACGCGCTGTGGTCAGGTTCTGTGAAAGCCCTGGGCCG
GCGCATAAGAAGGCAGTGATTAATTTCATGCAGTATCTCCTTCACACGAA
GGATTGGGGGATTACATACGGTCGACAGGGCTGTCGACTCTGCATGGAAG
CATACACCGACTCGACCTTCCGAACCTGCCTGGATACTAGATGTTTGGTG
TCGGGTGCGGTGTCGATGCTAGCGAAGAGGGCGATCAGCAGGTGCTCAAG
GATGAAATACGTGAAATCATCGGGTACCTCGGATGCAGAGTACTCTTTAT
TATAGATGGGCTGTCACATCATGAGGAACCGCAAGGCGCGCGAGTTGAAG
ATCGACCAGCACTTGTACATGGAGTCGATGGTGGAAATGTTTGACGTCAA
GAAGGCAAGAAATATACCGGCTATGTCGGGGGTGCCAACATTTTCAAAGG
CGGACGAAACGCGAAACCCGAAGGAGAAGGGGGAAATAAGTAAGTGTCCA
TACCGGGAGGCAGTGGGGGTGCTTATGTGGACGGCCACGATGATACGGCC
GGACTTTGCGAGCACAGAACGCGCTGTGGTCAGGTTCTGTGAAAGCCCTG
GGCCGGCGCATAAGAAGGCAGTGATTAATTTCATGCAGTATCTCCTTCAC
ACGAAGGATTGGGGGATTACATACGGTCGACAGGGCTGTCGACTCTGCAT
GGAAGCATACACCGACTCGACCTTCCGAACCTGCCTGGATACTAGATGTT
TGGTGTCGGGTGCGGTGTCGATGCTAGCGAAGAGGGCGATCAGCAGGTGC
TCAAGGATGAAATACGTGAAATCATCGGGTACCTCGGATGCAGAGTACTC
TTTATTATAG
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