mRNA_H-elongata_contig117591.1374.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig117591.1374.1 vs. uniprot
Match: A0A6H5JSC9_9PHAE (HK protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JSC9_9PHAE) HSP 1 Score: 189 bits (479), Expect = 4.250e-56 Identity = 93/112 (83.04%), Postives = 96/112 (85.71%), Query Frame = 1
Query: 10 LRPGSWLVQGTLGLAYPGSMESHLCLAEWAKEAGATRYLDINWRPVFWELAAGGAGGN-YEALARERIAAFSQTADVVKLTDEEAEWLCGISGSEAFRDPSRLASFFPAAKA 342
L PGSWLVQGTLGLAYPGS ESH+CLAEWAKEAGA RYLDINWRPVFWELAAGG GG+ YE+LARERI FS TADVVKLTDEEAEWLCGI G A RDP L FFPAAKA
Sbjct: 218 LEPGSWLVQGTLGLAYPGSYESHVCLAEWAKEAGAVRYLDINWRPVFWELAAGGDGGDDYESLARERIMDFSLTADVVKLTDEEAEWLCGIPGEVALRDPPCLQRFFPAAKA 329
BLAST of mRNA_H-elongata_contig117591.1374.1 vs. uniprot
Match: A0A836CG16_9STRA (Ribokinase-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG16_9STRA) HSP 1 Score: 100 bits (250), Expect = 6.320e-23 Identity = 57/114 (50.00%), Postives = 69/114 (60.53%), Query Frame = 1
Query: 7 ALRPGSWLVQGTLGLAYPGSMESHLCLAEWAKE--AGATRYLDINWRPVFWELAAGGAGGNYEALARERIAAFSQTADVVKLTDEEAEWLCGISGSEAFRDPSRLASFFPAAKA 342
AL+ +WLVQGTLGLA P S +H L +E AG D+NWRPVFW E AR I F++ ADVVKLTDEEA WL G+S S+A R PS + + FPA+KA
Sbjct: 172 ALKGFNWLVQGTLGLAAPTSAATHRRLPPLLRERNAGVRHLCDVNWRPVFWPNVP-------EEHARSEILKFARIADVVKLTDEEAHWLFGMSASDALRRPSDVRALFPASKA 278
BLAST of mRNA_H-elongata_contig117591.1374.1 vs. uniprot
Match: A0A1D2A3Y7_AUXPR (PfkB domain-containing protein n=2 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A1D2A3Y7_AUXPR) HSP 1 Score: 93.2 bits (230), Expect = 4.220e-20 Identity = 48/110 (43.64%), Postives = 65/110 (59.09%), Query Frame = 1
Query: 10 LRPGSWLVQGTLGLAYPGSMESHLCLAEWAKEAGATRYLDINWRPVFWELAAGGAGGNYEALARERIAAFSQTADVVKLTDEEAEWLCGISGSEAFRDPSRLASFFPAAK 339
++ S +V GTLGLAYPGS + + E A+ AT LD+NWRPVFWE EA+A+ I F AD++K+T+EEAEWL GI G+ A P + + P A+
Sbjct: 169 IKSASVVVSGTLGLAYPGSAAAIRRVVELARAGSATLILDVNWRPVFWEAQG-------EAVAKATILDFIAAADLLKVTEEEAEWLWGIPGTRALEHPEEVLAKLPGAR 271
BLAST of mRNA_H-elongata_contig117591.1374.1 vs. uniprot
Match: A0A7S2Y4B3_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4B3_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 2.560e-18 Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 25 WLVQGTLGLAYPGSMESHLCLAEWAKEAGATRYLDINWRPVFWELAA--GGAGGNYEALARERIAAFSQTADVVKLTDEEAEWLCG--ISGSEAFRDPSRLASFFPAAK 339
WLV GTLGLA+ GS + + + +WA++ G +DINWRPVFWE+ + A YE + R I +AD+VK+TDEEA WL ++ EA +P+ L P K
Sbjct: 64 WLVTGTLGLAFEGSRSAQVSVIDWARKCGMQVLVDINWRPVFWEVESDQSEAMEAYEKVCRRMIKEVVASADLVKMTDEEAAWLFPGIVTVEEALSNPTLLKEQLPKCK 172
BLAST of mRNA_H-elongata_contig117591.1374.1 vs. uniprot
Match: A0A7S2XRW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XRW1_9STRA) HSP 1 Score: 82.4 bits (202), Expect = 4.230e-16 Identity = 46/105 (43.81%), Postives = 61/105 (58.10%), Query Frame = 1
Query: 25 WLVQGTLGLAYPGSMESHLCLAEWAKEAGATRYLDINWRPVFWELAAGGAGGNYEALARERIAAFSQTADVVKLTDEEAEWLCGISGSEAFRDPSRLASF-FPAA 336
W+V TL LA+ S +S + + + GA +DINWRPVFW + E+ AR+ I +Q A +VKLTDEEAEWL GIS +EA P ++A FP A
Sbjct: 205 WMVSSTLSLAFEESAKSVTNIVDRGLKGGAKLLVDINWRPVFWPNTS-------ESEARKSILELAQRAHIVKLTDEEAEWLFGISAAEALEHPDKVAKEGFPQA 302
BLAST of mRNA_H-elongata_contig117591.1374.1 vs. uniprot
Match: A0A7S2EWL2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EWL2_TRICV) HSP 1 Score: 77.0 bits (188), Expect = 7.570e-16 Identity = 43/91 (47.25%), Postives = 54/91 (59.34%), Query Frame = 1
Query: 25 WLVQGTLGLAYPGSMESHLCLAEWAKEAGATRY-LDINWRPVFWELAAGGAGGNYEALARERIAAFSQTADVVKLTDEEAEWLCGISGSEA 294
W+V GTLGLAYP S E+ + + A G R +D+NWRPVFW E+ AR+ + ++ ADVVKLTDEEAEW GI EA
Sbjct: 35 WIVCGTLGLAYPSSSEAIRSIVDRALSGGGARLCVDVNWRPVFWIEDRW-----TESEARDAVLNLARRADVVKLTDEEAEWAFGIPAREA 120
BLAST of mRNA_H-elongata_contig117591.1374.1 vs. uniprot
Match: I0YR92_COCSC (Ribokinase-like protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YR92_COCSC) HSP 1 Score: 80.9 bits (198), Expect = 1.500e-15 Identity = 45/113 (39.82%), Postives = 62/113 (54.87%), Query Frame = 1
Query: 1 MRALRPGSWLVQGTLGLAYPGSMESHLCLAEWAKEAGATRYLDINWRPVFWELAAGGAGGNYEALARERIAAFSQTADVVKLTDEEAEWLCGISGSEAFRDPSRLASFFPAAK 339
+ AL+ S LV GTLGL++P + + E AK A +D+NWRPVFW+ E A I + AD+VKL+DEEAEWL G+S S+A + P ++ P K
Sbjct: 184 LEALQSASALVTGTLGLSFPVTAAAMHKAVEAAKSGSAVVVVDVNWRPVFWDD---------ENQAPGIILPYVSKADIVKLSDEEAEWLFGLSASDALQHPDKVLEQLPGVK 287
BLAST of mRNA_H-elongata_contig117591.1374.1 vs. uniprot
Match: A0A8J9RBI0_9CHLO (Fructokinase-2 n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RBI0_9CHLO) HSP 1 Score: 79.0 bits (193), Expect = 7.380e-15 Identity = 42/111 (37.84%), Postives = 62/111 (55.86%), Query Frame = 1
Query: 7 ALRPGSWLVQGTLGLAYPGSMESHLCLAEWAKEAGATRYLDINWRPVFWELAAGGAGGNYEALARERIAAFSQTADVVKLTDEEAEWLCGISGSEAFRDPSRLASFFPAAK 339
ALR + LV GTLGL +P + E+ E A+ A +D+NWRPVFW+ + A + I + AD+VKL+DEEAEWL G++ ++A + P ++ P K
Sbjct: 186 ALRNSAALVTGTLGLNFPITAEAMYKAVETARAGSAVVLVDVNWRPVFWDDVS---------RAPDIIKPYVSKADIVKLSDEEAEWLFGLAAADALQHPDKVLEQLPGVK 287
BLAST of mRNA_H-elongata_contig117591.1374.1 vs. uniprot
Match: A0A7R9WRQ4_9STRA (Hypothetical protein n=2 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WRQ4_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 1.370e-14 Identity = 45/112 (40.18%), Postives = 61/112 (54.46%), Query Frame = 1
Query: 10 LRPGSWLVQGTLGLAYPGSMES-HLCLAEWAKEAGATRYLDINWRPVFWELAAGGAGGNYEALARERIAAFSQTADVVKLTDEEAEWLCGISGSEAFRDPSRLASFFPAAKA 342
+R W+V TL LA+P + ++ C+ +E Y+D+NWRPVFW ++A AR I Q ADVVK+TDEEAEWL GI+ EA P + +AKA
Sbjct: 39 MRGARWIVCSTLSLAFPKAADAIDACIDRAMREDETMLYIDVNWRPVFWPPQED-EDDPWKA-ARATIMELVQKADVVKMTDEEAEWLVGITAQEALEHPKLVHDQISSAKA 148
BLAST of mRNA_H-elongata_contig117591.1374.1 vs. uniprot
Match: A0A7S0LXP5_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LXP5_9CRYP) HSP 1 Score: 75.5 bits (184), Expect = 1.500e-14 Identity = 41/109 (37.61%), Postives = 55/109 (50.46%), Query Frame = 1
Query: 10 LRPGSWLVQGTLGLAYPGSMESHLCLAEWAKEAGATRYLDINWRPVFWELAAGGAGGNYEALARERIAAFSQTADVVKLTDEEAEWLCGISGSEAFRDPSRLASFFPAA 336
L +LV GTLGLAYPGS + L E A G RY+D+NWRPVFW+ EA AR + + + A ++K T +EA WL + P ++ P A
Sbjct: 37 LYAAEYLVTGTLGLAYPGSARAMQTLKEMATNLGLVRYVDVNWRPVFWQCP--------EAEARRAVREYLEGAALIKATADEAAWLFEMDRDLVLEKPFKVLRQCPGA 137 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117591.1374.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig117591.1374.1 >prot_H-elongata_contig117591.1374.1 ID=prot_H-elongata_contig117591.1374.1|Name=mRNA_H-elongata_contig117591.1374.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=116bp MRALRPGSWLVQGTLGLAYPGSMESHLCLAEWAKEAGATRYLDINWRPVFback to top mRNA from alignment at H-elongata_contig117591:297..1477+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig117591.1374.1 ID=mRNA_H-elongata_contig117591.1374.1|Name=mRNA_H-elongata_contig117591.1374.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1181bp|location=Sequence derived from alignment at H-elongata_contig117591:297..1477+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig117591:297..1477+ >mRNA_H-elongata_contig117591.1374.1 ID=mRNA_H-elongata_contig117591.1374.1|Name=mRNA_H-elongata_contig117591.1374.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=696bp|location=Sequence derived from alignment at H-elongata_contig117591:297..1477+ (Himanthalia elongata Himel1 dioecious)back to top |