mRNA_H-elongata_contig117508.1369.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117508.1369.1
Unique NamemRNA_H-elongata_contig117508.1369.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig117508.1369.1 vs. uniprot
Match: A0A6H5L3A9_9PHAE (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3A9_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 5.070e-16
Identity = 41/56 (73.21%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:   85 SFCSES-DGANA-QVYKTRVSRVRLATLAADMRCFLSANPGAVFADFVRWYSPPNW 246
            SF +ES DG  A Q   TR SR+RL+TL+ADM+CFLSANPGAVFADF+RWYSPPNW
Sbjct: 1150 SFAAESSDGFRARQQSNTRASRLRLSTLSADMQCFLSANPGAVFADFLRWYSPPNW 1205
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BLAST of mRNA_H-elongata_contig117508.1369.1 vs. uniprot
Match: UPI001F5E5492 (rab3 GTPase-activating protein catalytic subunit n=1 Tax=Schistocerca piceifrons TaxID=274613 RepID=UPI001F5E5492)

HSP 1 Score: 57.8 bits (138), Expect = 1.610e-7
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:  139 SRVRLATLAADMRCFLSANPGAVFADFVRWYSPPNWR 249
            +R+  A L +DM CF +ANPGAV  DF+RWYSPP+W+
Sbjct:  633 ARIMSAALLSDMECFKAANPGAVLEDFIRWYSPPDWK 669
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BLAST of mRNA_H-elongata_contig117508.1369.1 vs. uniprot
Match: UPI001F4F9304 (rab3 GTPase-activating protein catalytic subunit n=1 Tax=Schistocerca americana TaxID=7009 RepID=UPI001F4F9304)

HSP 1 Score: 57.8 bits (138), Expect = 1.630e-7
Identity = 22/37 (59.46%), Postives = 29/37 (78.38%), Query Frame = 1 
Query:  139 SRVRLATLAADMRCFLSANPGAVFADFVRWYSPPNWR 249
            +R+  A L +DM CF +ANPGAV  DF+RWYSPP+W+
Sbjct:  633 ARIMSAALLSDMECFKAANPGAVLEDFIRWYSPPDWK 669
[Close]
BLAST of mRNA_H-elongata_contig117508.1369.1 vs. uniprot
Match: A0A2J6KB90_LACSA (Rab3 GTPase-activating protein catalytic subunit n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6KB90_LACSA)

HSP 1 Score: 53.9 bits (128), Expect = 3.590e-6
Identity = 19/38 (50.00%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:  160 LAADMRCFLSANPGAVFADFVRWYSPPNWRPSGELRKR 273
            L +DM+ F +ANPG +  DFVRW+SPP+W P+G++ ++
Sbjct:  405 LLSDMQAFKAANPGCILEDFVRWHSPPDWEPAGDVERK 442
[Close]
BLAST of mRNA_H-elongata_contig117508.1369.1 vs. uniprot
Match: A0A8J9VS04_9NEOP ((lesser marbled fritillary) hypothetical protein n=1 Tax=Brenthis ino TaxID=405034 RepID=A0A8J9VS04_9NEOP)

HSP 1 Score: 53.5 bits (127), Expect = 4.560e-6
Identity = 25/49 (51.02%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  106 GANAQVYKTRVSRVRLATLAADMRCFLSANPGAVFADFVRWYSPPNWRP 252
            G NA+  + R +R+  A+L +DM  F +ANPGA   DFVRWYSP +W+P
Sbjct:  135 GDNAKASELR-ARMMSASLLSDMEAFKAANPGAELCDFVRWYSPRDWKP 182
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BLAST of mRNA_H-elongata_contig117508.1369.1 vs. uniprot
Match: A0A2V0NSJ2_9CHLO (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NSJ2_9CHLO)

HSP 1 Score: 53.1 bits (126), Expect = 7.040e-6
Identity = 26/50 (52.00%), Postives = 32/50 (64.00%), Query Frame = 1 
Query:   97 ESDGANAQVYKTRVSRVRLATLAADMRCFLSANPGAVFADFVRWYSPPNW 246
            E+    A V K R+ + RL  L +DM  F +ANPG VF DFVRWYSP +W
Sbjct: 1465 EASAGAALVDKVRLHQSRL--LVSDMSAFKAANPGCVFEDFVRWYSPSDW 1512
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BLAST of mRNA_H-elongata_contig117508.1369.1 vs. uniprot
Match: A0A392RAJ0_9FABA (Rab3 GTPase-activating protein catalytic subunit (Fragment) n=1 Tax=Trifolium medium TaxID=97028 RepID=A0A392RAJ0_9FABA)

HSP 1 Score: 49.7 bits (117), Expect = 7.650e-6
Identity = 18/29 (62.07%), Postives = 24/29 (82.76%), Query Frame = 1 
Query:  160 LAADMRCFLSANPGAVFADFVRWYSPPNW 246
            L +DM+ F +ANPG ++ DFVRWYSPP+W
Sbjct:   11 LLSDMQAFKAANPGCIWEDFVRWYSPPDW 39
[Close]
BLAST of mRNA_H-elongata_contig117508.1369.1 vs. uniprot
Match: A0A212FF94_DANPL (Rab3 GTPase-activating protein catalytic subunit n=2 Tax=Danaus TaxID=13036 RepID=A0A212FF94_DANPL)

HSP 1 Score: 52.4 bits (124), Expect = 1.150e-5
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  106 GANAQVYKTRVSRVRLATLAADMRCFLSANPGAVFADFVRWYSPPNWRP 252
            G NA+  + R +++  A+L +DM  F +ANPGA   DFVRWYSP +W+P
Sbjct:  116 GDNAKASELR-AKMMSASLLSDMEAFKAANPGAELCDFVRWYSPRDWKP 163
[Close]
BLAST of mRNA_H-elongata_contig117508.1369.1 vs. uniprot
Match: A0A7I1A9J8_DANPL (Rab3 GTPase-activating protein catalytic subunit n=1 Tax=Danaus plexippus plexippus TaxID=278856 RepID=A0A7I1A9J8_DANPL)

HSP 1 Score: 52.4 bits (124), Expect = 1.270e-5
Identity = 24/49 (48.98%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:  106 GANAQVYKTRVSRVRLATLAADMRCFLSANPGAVFADFVRWYSPPNWRP 252
            G NA+  + R +++  A+L +DM  F +ANPGA   DFVRWYSP +W+P
Sbjct:  585 GDNAKASELR-AKMMSASLLSDMEAFKAANPGAELCDFVRWYSPRDWKP 632
[Close]
BLAST of mRNA_H-elongata_contig117508.1369.1 vs. uniprot
Match: UPI001B3BA774 (rab3 GTPase-activating protein catalytic subunit isoform X4 n=1 Tax=Gossypium hirsutum TaxID=3635 RepID=UPI001B3BA774)

HSP 1 Score: 52.0 bits (123), Expect = 1.740e-5
Identity = 20/30 (66.67%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:  157 TLAADMRCFLSANPGAVFADFVRWYSPPNW 246
            TL++DM  F +ANPGAVF DF+RWYSP +W
Sbjct:  623 TLSSDMSAFKAANPGAVFEDFIRWYSPTDW 652
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117508.1369.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L3A9_9PHAE5.070e-1673.21Rab3 GTPase-activating protein catalytic subunit n... [more]
UPI001F5E54921.610e-759.46rab3 GTPase-activating protein catalytic subunit n... [more]
UPI001F4F93041.630e-759.46rab3 GTPase-activating protein catalytic subunit n... [more]
A0A2J6KB90_LACSA3.590e-650.00Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A8J9VS04_9NEOP4.560e-651.02(lesser marbled fritillary) hypothetical protein n... [more]
A0A2V0NSJ2_9CHLO7.040e-652.00Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A392RAJ0_9FABA7.650e-662.07Rab3 GTPase-activating protein catalytic subunit (... [more]
A0A212FF94_DANPL1.150e-548.98Rab3 GTPase-activating protein catalytic subunit n... [more]
A0A7I1A9J8_DANPL1.270e-548.98Rab3 GTPase-activating protein catalytic subunit n... [more]
UPI001B3BA7741.740e-566.67rab3 GTPase-activating protein catalytic subunit i... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117508contigH-elongata_contig117508:1550..1858 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score61.2
Seed ortholog evalue3.2e-07
Seed eggNOG ortholog6087.XP_002158058.2
Preferred nameRAB3GAP1
KEGG koko:K18270
GOsGO:0001505,GO:0001654,GO:0001956,GO:0003008,GO:0003674,GO:0005085,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005789,GO:0005794,GO:0005811,GO:0005829,GO:0006807,GO:0006810,GO:0006914,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007267,GO:0007268,GO:0007275,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0008047,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009653,GO:0009889,GO:0009891,GO:0009893,GO:0009894,GO:0009896,GO:0009966,GO:0009987,GO:0010171,GO:0010468,GO:0010506,GO:0010508,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010807,GO:0012505,GO:0014048,GO:0014049,GO:0016020,GO:0016043,GO:0016192,GO:0016239,GO:0016241,GO:0017016,GO:0017137,GO:0017157,GO:0017158,GO:0019222,GO:0019538,GO:0019899,GO:0021536,GO:0021761,GO:0021854,GO:0023051,GO:0023052,GO:0023056,GO:0030234,GO:0030695,GO:0030900,GO:0031267,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031329,GO:0031331,GO:0031399,GO:0031401,GO:0031647,GO:0031984,GO:0032268,GO:0032270,GO:0032386,GO:0032483,GO:0032501,GO:0032502,GO:0032879,GO:0032890,GO:0032892,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034389,GO:0034613,GO:0042175,GO:0042391,GO:0043010,GO:0043085,GO:0043087,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043269,GO:0043270,GO:0043547,GO:0044070,GO:0044087,GO:0044088,GO:0044089,GO:0044090,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045202,GO:0046578,GO:0046907,GO:0046928,GO:0046982,GO:0046983,GO:0048167,GO:0048168,GO:0048172,GO:0048489,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048731,GO:0048856,GO:0050746,GO:0050747,GO:0050789,GO:0050790,GO:0050794,GO:0050804,GO:0050806,GO:0050821,GO:0050877,GO:0050896,GO:0051020,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051056,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051336,GO:0051345,GO:0051588,GO:0051590,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0051952,GO:0051954,GO:0051955,GO:0051957,GO:0051966,GO:0051968,GO:0060076,GO:0060078,GO:0060079,GO:0060255,GO:0060322,GO:0060323,GO:0060324,GO:0060325,GO:0060341,GO:0060589,GO:0060627,GO:0061646,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070727,GO:0070972,GO:0071704,GO:0071782,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0097051,GO:0097435,GO:0097479,GO:0097480,GO:0098693,GO:0098772,GO:0098827,GO:0098916,GO:0099003,GO:0099177,GO:0099536,GO:0099537,GO:0099565,GO:1901564,GO:1902115,GO:1902117,GO:1902531,GO:1902803,GO:1903059,GO:1903061,GO:1903233,GO:1903294,GO:1903296,GO:1903305,GO:1903371,GO:1903373,GO:1903530,GO:1903532,GO:1903793,GO:1905114,GO:1990000,GO:2000112,GO:2000300,GO:2000785,GO:2000786
EggNOG free text desc.positive regulation of glutamate neurotransmitter secretion in response to membrane depolarization
EggNOG OGs38HEI@33154,3BAPD@33208,KOG2390@1,KOG2390@2759
COG Functional cat.DKL
Best tax levelMetazoa
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131,ko04147
Hectar predicted targeting categoryother localisation
Exons1
Model size309
Cds size309
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929685.4169297-CDS-H-elongata_contig117508:1549..18581622929685.4169297-CDS-H-elongata_contig117508:1549..1858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117508 1550..1858 -
1691679118.667566-CDS-H-elongata_contig117508:1549..18581691679118.667566-CDS-H-elongata_contig117508:1549..1858Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117508 1550..1858 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117508.1369.1prot_H-elongata_contig117508.1369.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117508 1550..1858 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117508.1369.1

>prot_H-elongata_contig117508.1369.1 ID=prot_H-elongata_contig117508.1369.1|Name=mRNA_H-elongata_contig117508.1369.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=103bp
CHLDRSLSECVPSPPHSTPTSHLLRSPPSFCSESDGANAQVYKTRVSRVR
LATLAADMRCFLSANPGAVFADFVRWYSPPNWRPSGELRKRRRQGRAHKP
RTE
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mRNA from alignment at H-elongata_contig117508:1550..1858-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117508.1369.1 ID=mRNA_H-elongata_contig117508.1369.1|Name=mRNA_H-elongata_contig117508.1369.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=309bp|location=Sequence derived from alignment at H-elongata_contig117508:1550..1858- (Himanthalia elongata Himel1 dioecious)
TGCCACCTTGATCGTTCATTGTCTGAATGTGTGCCTTCCCCACCCCACTC
TACCCCTACCTCGCATCTACTACGTTCACCCCCCAGCTTCTGCTCCGAGT
CAGACGGTGCGAACGCGCAGGTGTACAAGACCAGGGTGTCGCGGGTGCGC
TTGGCGACGCTTGCGGCAGACATGCGGTGCTTCCTCAGCGCGAATCCGGG
AGCGGTATTCGCGGACTTCGTTCGCTGGTACAGCCCGCCGAACTGGCGAC
CCAGCGGCGAGCTTCGGAAGCGCAGGCGTCAGGGGCGTGCCCACAAGCCC
CGCACGGAG
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Coding sequence (CDS) from alignment at H-elongata_contig117508:1550..1858-

>mRNA_H-elongata_contig117508.1369.1 ID=mRNA_H-elongata_contig117508.1369.1|Name=mRNA_H-elongata_contig117508.1369.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=618bp|location=Sequence derived from alignment at H-elongata_contig117508:1550..1858- (Himanthalia elongata Himel1 dioecious)
TGCCACCTTGATCGTTCATTGTCTGAATGTGTGCCTTCCCCACCCCACTC
TACCCCTACCTCGCATCTACTACGTTCACCCCCCAGCTTCTGCTCCGAGT
CAGACGGTGCGAACGCGCAGGTGTACAAGACCAGGGTGTCGCGGGTGCGC
TTGGCGACGCTTGCGGCAGACATGCGGTGCTTCCTCAGCGCGAATCCGGG
AGCGGTATTCGCGGACTTCGTTCGCTGGTACAGCCCGCCGAACTGGCGAC
CCAGCGGCGAGCTTCGGAAGCGCAGGCGTCAGGGGCGTGCCCACAAGCCC
CGCACGGAGTGCCACCTTGATCGTTCATTGTCTGAATGTGTGCCTTCCCC
ACCCCACTCTACCCCTACCTCGCATCTACTACGTTCACCCCCCAGCTTCT
GCTCCGAGTCAGACGGTGCGAACGCGCAGGTGTACAAGACCAGGGTGTCG
CGGGTGCGCTTGGCGACGCTTGCGGCAGACATGCGGTGCTTCCTCAGCGC
GAATCCGGGAGCGGTATTCGCGGACTTCGTTCGCTGGTACAGCCCGCCGA
ACTGGCGACCCAGCGGCGAGCTTCGGAAGCGCAGGCGTCAGGGGCGTGCC
CACAAGCCCCGCACGGAG
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