mRNA_H-elongata_contig117475.1367.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117475.1367.1
Unique NamemRNA_H-elongata_contig117475.1367.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: D8LIC7_ECTSI (Intraflagellar transport protein 80 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIC7_ECTSI)

HSP 1 Score: 122 bits (307), Expect = 1.090e-30
Identity = 55/72 (76.39%), Postives = 62/72 (86.11%), Query Frame = 1
Query:    1 VATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKVAPHIGAAACVRWSPDGSALCSCGED 216
            V  L+AFVTSV WFPSSG  + D+FAA+CSDGTVRL TRAGREEKKV+ H+GA  C+RWSPDGSALCSCGED
Sbjct:   49 VTGLDAFVTSVDWFPSSGARSSDLFAAACSDGTVRLITRAGREEKKVSAHMGAVVCIRWSPDGSALCSCGED 120          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: A0A835ZN10_9STRA (Intraflagellar transport protein 80 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZN10_9STRA)

HSP 1 Score: 107 bits (267), Expect = 2.780e-25
Identity = 50/77 (64.94%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 VATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKVAPHIGAAACVRWSPDGSALCSCGEDGDVKV 231
            V T E + TS++WFPS  K   D+F   CSDGT R F+RAGREEKKV  H GA   V WS DGSALCSCGEDGDVKV
Sbjct:   49 VTTTEPYGTSMSWFPSVSKQVSDLFVMGCSDGTFRFFSRAGREEKKVDAHTGAVVRVAWSYDGSALCSCGEDGDVKV 125          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: A0A7S3M0Q2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M0Q2_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.460e-24
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1
Query:   10 LEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKVAPHIGAAACVRWSPDGSALCSCGEDGDVKV 231
            +  FVT + WFPS+GK  PD FA SCSDGT R  +R+GREEKKVA H GA   +RWS DG+A+ + GEDGD+K+
Sbjct:   50 ISVFVTGIAWFPSTGKQAPDTFAMSCSDGTFRFVSRSGREEKKVAAHSGAVILIRWSHDGAAILTAGEDGDIKI 123          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: F0Y8Y1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8Y1_AURAN)

HSP 1 Score: 93.2 bits (230), Expect = 2.790e-20
Identity = 44/76 (57.89%), Postives = 55/76 (72.37%), Query Frame = 1
Query:    4 ATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKVAPHIGAAACVRWSPDGSALCSCGEDGDVKV 231
            A L+ + TS+ W P+ GK   D+FA SC+DGT+RL T  GREEKKVA H GAA  V W+ +GSAL S GEDG++KV
Sbjct:   50 AQLDTYPTSIAWMPNIGKGASDVFALSCADGTLRLMTGGGREEKKVAAHHGAALRVVWNFEGSALYSAGEDGEIKV 125          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: K3WVM6_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WVM6_GLOUD)

HSP 1 Score: 92.0 bits (227), Expect = 7.090e-20
Identity = 41/77 (53.25%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 VATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKVAPHIGAAACVRWSPDGSALCSCGEDGDVKV 231
            VA++EAFVT++ W PS GK   D FA SC+DGT RL ++ GREEKKV    GA   ++W+ DG+AL + GEDG +K+
Sbjct:   50 VASMEAFVTTIDWVPSVGKQAADTFAVSCTDGTFRLMSKTGREEKKVQACDGAVIVLKWNYDGTALVTAGEDGTIKI 126          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: F0WV09_9STRA (KIAA1374 protein putative n=3 Tax=Albugo TaxID=65356 RepID=F0WV09_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 3.360e-19
Identity = 38/77 (49.35%), Postives = 55/77 (71.43%), Query Frame = 1
Query:    1 VATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKVAPHIGAAACVRWSPDGSALCSCGEDGDVKV 231
            + T++A+VTS+ W PS GK   D FA +C+DGT RL T++GREEK+V    GA   ++W+ DG+AL + GEDG +K+
Sbjct:   50 ITTIDAYVTSIDWIPSIGKQAADTFAVACTDGTFRLITKSGREEKRVQASEGAVIALKWNYDGTALITAGEDGMLKI 126          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: A0A8K1CRT4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CRT4_PYTOL)

HSP 1 Score: 89.7 bits (221), Expect = 4.590e-19
Identity = 42/78 (53.85%), Postives = 56/78 (71.79%), Query Frame = 1
Query:    1 VATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKV-APHIGAAACVRWSPDGSALCSCGEDGDVKV 231
            VAT++AFVT+V W PS GK   D FA +C+DGT RL ++ GREEKKV A   GA   ++W+ DG+AL + GEDG +K+
Sbjct:   50 VATMDAFVTAVDWVPSVGKQAADTFAVACTDGTFRLISKTGREEKKVQASDAGAIIALKWNYDGTALVTVGEDGAIKI 127          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: A0A2P4Y101_9STRA (Intraflagellar Transport protein 80 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4Y101_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 7.020e-19
Identity = 41/84 (48.81%), Postives = 59/84 (70.24%), Query Frame = 1
Query:    1 VATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKV-APHIGAAACVRWSPDGSALCSCGEDGDVKVRNPRVY 249
            V  ++AFVTSV W PS GK + D FA SC+DGT RL +++GREEK+V A   GA   ++W+ DG+AL + GEDG +K+ +  ++
Sbjct:   50 VTKMDAFVTSVHWVPSVGKQSADTFAVSCTDGTFRLISKSGREEKRVQACDAGAVIALKWNYDGTALVTAGEDGTLKICDQLLF 133          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: A0A482RSJ8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RSJ8_9ARCH)

HSP 1 Score: 81.3 bits (199), Expect = 1.250e-18
Identity = 33/54 (61.11%), Postives = 44/54 (81.48%), Query Frame = 1
Query:   70 MFAASCSDGTVRLFTRAGREEKKVAPHIGAAACVRWSPDGSALCSCGEDGDVKV 231
            MFA SC+DGTVR  +++GREEKK++ H GA   ++WS DG+ALC+ GEDGDVK+
Sbjct:    1 MFAVSCTDGTVRYISKSGREEKKISAHEGAVITMKWSHDGNALCTAGEDGDVKI 54          
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Match: A0A7S1C6H3_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C6H3_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.600e-18
Identity = 44/78 (56.41%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 VATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKV-APHIGAAACVRWSPDGSALCSCGEDGDVKV 231
            VATL+ +VT + WFPS G+   DMF  SCSDGT RL  + GREEK+V A    A   +RWS DG+AL + GEDG VKV
Sbjct:   50 VATLDTYVTDMHWFPSIGRQVADMFVVSCSDGTFRLIHQTGREEKRVEASPTAAIISLRWSYDGAALVTAGEDGAVKV 127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117475.1367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIC7_ECTSI1.090e-3076.39Intraflagellar transport protein 80 n=2 Tax=Ectoca... [more]
A0A835ZN10_9STRA2.780e-2564.94Intraflagellar transport protein 80 n=1 Tax=Tribon... [more]
A0A7S3M0Q2_9STRA2.460e-2459.46Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
F0Y8Y1_AURAN2.790e-2057.89Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
K3WVM6_GLOUD7.090e-2053.25Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
F0WV09_9STRA3.360e-1949.35KIAA1374 protein putative n=3 Tax=Albugo TaxID=653... [more]
A0A8K1CRT4_PYTOL4.590e-1953.85Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2P4Y101_9STRA7.020e-1948.81Intraflagellar Transport protein 80 (Fragment) n=1... [more]
A0A482RSJ8_9ARCH1.250e-1861.11Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S1C6H3_9STRA1.600e-1856.41Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117475contigH-elongata_contig117475:276..771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue1.5e-26
Seed eggNOG ortholog2880.D8LIC7
Preferred nameIFT80
KEGG koko:K19678
GOsGO:0002119,GO:0002164,GO:0003674,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0006935,GO:0006996,GO:0007275,GO:0008150,GO:0009593,GO:0009605,GO:0009791,GO:0009966,GO:0009968,GO:0009987,GO:0010035,GO:0010646,GO:0010648,GO:0015630,GO:0016043,GO:0017015,GO:0022607,GO:0023051,GO:0023057,GO:0030030,GO:0030031,GO:0030512,GO:0030990,GO:0030992,GO:0032501,GO:0032502,GO:0032991,GO:0036064,GO:0040008,GO:0040011,GO:0040012,GO:0040014,GO:0040017,GO:0040018,GO:0040024,GO:0042221,GO:0042330,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043327,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0045927,GO:0048518,GO:0048519,GO:0048520,GO:0048523,GO:0048583,GO:0048585,GO:0048638,GO:0048639,GO:0048856,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050896,GO:0051094,GO:0051239,GO:0051240,GO:0051606,GO:0060271,GO:0065007,GO:0070925,GO:0071840,GO:0090092,GO:0090101,GO:0090287,GO:0090288,GO:0090325,GO:0090326,GO:0097730,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1903844,GO:1903845,GO:1905515
EggNOG free text desc.cilium assembly
EggNOG OGsCOG2319@1,KOG1524@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Hectar predicted targeting categoryother localisation
Exons2
Model size252
Cds size252
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929685.2038708-CDS-H-elongata_contig117475:275..4201622929685.2038708-CDS-H-elongata_contig117475:275..420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117475 276..420 +
1691679118.5670598-CDS-H-elongata_contig117475:275..4201691679118.5670598-CDS-H-elongata_contig117475:275..420Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117475 276..420 +
1622929685.2194273-CDS-H-elongata_contig117475:664..7711622929685.2194273-CDS-H-elongata_contig117475:664..771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117475 665..771 +
1691679118.5879369-CDS-H-elongata_contig117475:664..7711691679118.5879369-CDS-H-elongata_contig117475:664..771Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117475 665..771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117475.1367.1prot_H-elongata_contig117475.1367.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117475 276..771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117475.1367.1

>prot_H-elongata_contig117475.1367.1 ID=prot_H-elongata_contig117475.1367.1|Name=mRNA_H-elongata_contig117475.1367.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp
VATLEAFVTSVTWFPSSGKHTPDMFAASCSDGTVRLFTRAGREEKKVAPH
IGAAACVRWSPDGSALCSCGEDGDVKVRNPRVY*
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mRNA from alignment at H-elongata_contig117475:276..771+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117475.1367.1 ID=mRNA_H-elongata_contig117475.1367.1|Name=mRNA_H-elongata_contig117475.1367.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=496bp|location=Sequence derived from alignment at H-elongata_contig117475:276..771+ (Himanthalia elongata Himel1 dioecious)
GTGGCGACGTTGGAGGCGTTCGTCACATCTGTTACATGGTTCCCTAGCTC TGGTAAACATACGCCGGACATGTTTGCAGCTTCTTGCTCCGACGGCACCG TGAGGCTGTTCACTAGAGCTGGCAGGGAAGAGAAAAAGGTAGCTCGTAAT AAACTAACTATTAAAACCAACTTGGCGTATAGCGCACTGGCGCATTCACG TCACTGAGCCCTCGGGAGATAAAACGTTTCACTTCACAAACCTAGACAAG GGATAATATGGGGGGGGGGTGATTGCGGTTGTCGCTGTCCCTTTCTCCGT GCACCGTAATTATAATTCGTTGTCCTGTTTCGTCGTGAATATTTCGGGTA CATGTACTCTCCACCGTTTTTGTTAAATCAAGGTATCAGCACACATAGGG GCGGCTGCGTGTGTGCGCTGGAGCCCCGACGGCAGTGCCTTGTGCTCTTG CGGCGAGGACGGTGACGTCAAGGTCAGAAATCCTCGTGTTTACTAA
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Coding sequence (CDS) from alignment at H-elongata_contig117475:276..771+

>mRNA_H-elongata_contig117475.1367.1 ID=mRNA_H-elongata_contig117475.1367.1|Name=mRNA_H-elongata_contig117475.1367.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig117475:276..771+ (Himanthalia elongata Himel1 dioecious)
GTGGCGACGTTGGAGGCGTTCGTCACATCTGTTACATGGTTCCCTAGCTC
TGGTAAACATACGCCGGACATGTTTGCAGCTTCTTGCTCCGACGGCACCG
TGAGGCTGTTCACTAGAGCTGGCAGGGAAGAGAAAAAGGTAGCTCGTGGC
GACGTTGGAGGCGTTCGTCACATCTGTTACATGGTTCCCTAGCTCTGGTA
AACATACGCCGGACATGTTTGCAGCTTCTTGCTCCGACGGCACCGTGAGG
CTGTTCACTAGAGCTGGCAGGGAAGAGAAAAAGGTAGCTCCACACATAGG
GGCGGCTGCGTGTGTGCGCTGGAGCCCCGACGGCAGTGCCTTGTGCTCTT
GCGGCGAGGACGGTGACGTCAAGGTCAGAAATCCTCGTGTTTACTAACAC
ACATAGGGGCGGCTGCGTGTGTGCGCTGGAGCCCCGACGGCAGTGCCTTG
TGCTCTTGCGGCGAGGACGGTGACGTCAAGGTCAGAAATCCTCGTGTTTA
CTAA
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