mRNA_H-elongata_contig11746.1366.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11746.1366.1
Unique NamemRNA_H-elongata_contig11746.1366.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11746.1366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11746contigH-elongata_contig11746:2774..4408 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size744
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11746.1366.1prot_H-elongata_contig11746.1366.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11746 2827..4146 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929684.5851514-UTR-H-elongata_contig11746:2773..28261622929684.5851514-UTR-H-elongata_contig11746:2773..2826Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11746 2774..2826 +
1691679118.50864-UTR-H-elongata_contig11746:2773..28261691679118.50864-UTR-H-elongata_contig11746:2773..2826Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11746 2774..2826 +
1622929684.646722-UTR-H-elongata_contig11746:4146..44081622929684.646722-UTR-H-elongata_contig11746:4146..4408Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11746 4147..4408 +
1691679118.5568385-UTR-H-elongata_contig11746:4146..44081691679118.5568385-UTR-H-elongata_contig11746:4146..4408Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11746 4147..4408 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929684.5964813-CDS-H-elongata_contig11746:2826..28771622929684.5964813-CDS-H-elongata_contig11746:2826..2877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11746 2827..2877 +
1691679118.5197961-CDS-H-elongata_contig11746:2826..28771691679118.5197961-CDS-H-elongata_contig11746:2826..2877Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11746 2827..2877 +
1622929684.6074228-CDS-H-elongata_contig11746:3316..33671622929684.6074228-CDS-H-elongata_contig11746:3316..3367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11746 3317..3367 +
1691679118.5286162-CDS-H-elongata_contig11746:3316..33671691679118.5286162-CDS-H-elongata_contig11746:3316..3367Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11746 3317..3367 +
1622929684.6192365-CDS-H-elongata_contig11746:3755..38341622929684.6192365-CDS-H-elongata_contig11746:3755..3834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11746 3756..3834 +
1691679118.538023-CDS-H-elongata_contig11746:3755..38341691679118.538023-CDS-H-elongata_contig11746:3755..3834Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11746 3756..3834 +
1622929684.633186-CDS-H-elongata_contig11746:3898..41461622929684.633186-CDS-H-elongata_contig11746:3898..4146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11746 3899..4146 +
1691679118.5477388-CDS-H-elongata_contig11746:3898..41461691679118.5477388-CDS-H-elongata_contig11746:3898..4146Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11746 3899..4146 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11746.1366.1

>prot_H-elongata_contig11746.1366.1 ID=prot_H-elongata_contig11746.1366.1|Name=mRNA_H-elongata_contig11746.1366.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=143bp
MLNIHGMKFSGERLGVDWKKKKTGSAGPDAWAPERRRTDSTRSSANHDYG
RSRDRDSPPRSRDRGTREIGIATIGASAGRGREAGTGTGTSTLLTEATGR
GREEKDGGCREVGIGTGETVRVEGSETAGTVVGIRVGAEVGK*
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mRNA from alignment at H-elongata_contig11746:2774..4408+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11746.1366.1 ID=mRNA_H-elongata_contig11746.1366.1|Name=mRNA_H-elongata_contig11746.1366.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1635bp|location=Sequence derived from alignment at H-elongata_contig11746:2774..4408+ (Himanthalia elongata Himel1 dioecious)
AGGGTAATTTCGGCTTCGTGGATTTCCAGGACCGCAAGCAGGCGAAGGAA
GCCATGCTGAACATCCACGGGATGAAGTTCAGCGGGGAACGCTTGGGCGT
GGACGTGAGAAGTCTTCTCAGGGTGGTCGTTATCACCATCGCGCCGGACT
GGATTATATTTTATTAGATTGGATTGGGTTGAGTTGCCACGCGTCCGCTC
TTGGAACGTGACCATGTGCCGTCGACGCTGTATGTGTTGTAGAAATAGTA
GGTGTTGGCCACGCGAGCCCGCCCGACCACTTACCCGTGCACAACAGAAT
CTCCCGCGGTGTTGCTGAGATAAGTACTCGATACCGCGCCGAACGTTCCC
GGCGTGTTCTGAAGCTTATCCTGTTCGGTAGAAGAAGGAAAATGACTAGA
GCGAACAAGGCACGCAACCCCTCGTCCCCATTTCGCATGCACGCGATAAA
CGCCTCCTCTTCTTTCTCTTTACTCGACGGGATCTTGTTTCTACGAACTG
TCTGCGTGTCTTTGTGTATTTGCGTTGCTTTCTTGTGCTACAGTGGAAGA
AAAAGAAGACCGGGTCTGCAGGACCTGATGCCTGGGCTCCCGAAGTGAGA
AAAAACTCGTCCCACAACGCGCGATCTACCCGTGCCACGCAATCGTTAGT
TTTGTTTTTGAAGTTTAGTTGGAATGAAGATCTCATGCGTGTGGCACACA
CCGTGTGGCATGTGCGTTATAGCACGCTGGCGCCCCCCTACCCCCGACCA
TTTTTTTCTCAGTCGAAGCCCTGGTTAATGCTTGAAGTCGGTTGACGTCG
CTGGACGGGGTCTCTCCCTCTACCTTCGTTCCCGTCAAGCCATACCGGAT
ATTGCATCGGTACGTTGCCAGGAGATCGGAATATGCCCCCCATCCTCCCT
CACATTTTATGTAAAAGCACGAGCTCGATAACGCGGACCGTGTAACGCGT
CGCTACTGCTGCTGCTGCTGCGGACGTCACAGAGACGCAGGACCGACTCA
ACAAGATCAAGCGCCAACCACGACTACGGTCGCAGCAGGGACCGGGACTC
CCCGCCCCGCAGTAGCTACAGAACCCACCGAGACTCGAGGGACAGACGGG
ACGGGGAGAGGGGAGGGTCAATCAGGTCGCGATCGAGGGACACGAGAGAT
CGGGATCGCTACGATCGGCGCGAGCGCAGGTCGAGGTCGAGAGGCAGGAA
CAGGAACAGGCACGAGTACACTCTTGACCGAGGCTACCGGTCGAGGTCGA
GAGGAGAAAGACGGAGGGTGTCGAGAAGTAGGGATAGGGACAGGAGAAAC
GGTCAGGGTGGAGGGGAGCGAAACCGCCGGAACCGTAGTCGGGATCAGAG
TAGGAGCCGAAGTCGGAAAATAAGTCGGAGCTGGAGTCGAAGCCTCAGTC
GAAGCTTCAGTCGGAGCCGCAGCCGCGACCGGAGGCGTTGGCGGAAATCT
ATCTCGGCCCGCCGACAAGAGAACAAGGGGGGCAACCGTACGAGAGAGCG
CAGCAGCAGTGGCAGCAGCAGAGGAGGGATCCCGACACGAAGCCGAAGCG
AATCGCGCGGGGAAGATAAGCGACGCGACTCTCGAAAGAGCGGGCGTGGT
CGATCGACGTCCTCCGATCCATCGGACGAGAGCCC
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Coding sequence (CDS) from alignment at H-elongata_contig11746:2774..4408+

>mRNA_H-elongata_contig11746.1366.1 ID=mRNA_H-elongata_contig11746.1366.1|Name=mRNA_H-elongata_contig11746.1366.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=858bp|location=Sequence derived from alignment at H-elongata_contig11746:2774..4408+ (Himanthalia elongata Himel1 dioecious)
ATGCTGAACATCCACGGGATGAAGTTCAGCGGGGAACGCTTGGGCGTGGA
CATGCTGAACATCCACGGGATGAAGTTCAGCGGGGAACGCTTGGGCGTGG
ACTGGAAGAAAAAGAAGACCGGGTCTGCAGGACCTGATGCCTGGGCTCCC
GAATGGAAGAAAAAGAAGACCGGGTCTGCAGGACCTGATGCCTGGGCTCC
CGAAAGACGCAGGACCGACTCAACAAGATCAAGCGCCAACCACGACTACG
GTCGCAGCAGGGACCGGGACTCCCCGCCCCGCAAGACGCAGGACCGACTC
AACAAGATCAAGCGCCAACCACGACTACGGTCGCAGCAGGGACCGGGACT
CCCCGCCCCGCAGTCGCGATCGAGGGACACGAGAGATCGGGATCGCTACG
ATCGGCGCGAGCGCAGGTCGAGGTCGAGAGGCAGGAACAGGAACAGGCAC
GAGTACACTCTTGACCGAGGCTACCGGTCGAGGTCGAGAGGAGAAAGACG
GAGGGTGTCGAGAAGTAGGGATAGGGACAGGAGAAACGGTCAGGGTGGAG
GGGAGCGAAACCGCCGGAACCGTAGTCGGGATCAGAGTAGGAGCCGAAGT
CGGAAAATAAGTCGCGATCGAGGGACACGAGAGATCGGGATCGCTACGAT
CGGCGCGAGCGCAGGTCGAGGTCGAGAGGCAGGAACAGGAACAGGCACGA
GTACACTCTTGACCGAGGCTACCGGTCGAGGTCGAGAGGAGAAAGACGGA
GGGTGTCGAGAAGTAGGGATAGGGACAGGAGAAACGGTCAGGGTGGAGGG
GAGCGAAACCGCCGGAACCGTAGTCGGGATCAGAGTAGGAGCCGAAGTCG
GAAAATAA
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