mRNA_H-elongata_contig117432.1362.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117432.1362.1
Unique NamemRNA_H-elongata_contig117432.1362.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig117432.1362.1 vs. uniprot
Match: A0A6H5K3X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3X2_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 3.680e-40
Identity = 67/87 (77.01%), Postives = 69/87 (79.31%), Query Frame = 1
Query:    1 GRDAHGGNVQNGCGARFDWLMAHHYVGDRGVRKKVPFTEREPKAAARSRHFIAPGIPLRCDRCHRDVVGPLFRCIHCPSFVCCLECQ 261
            G D HGGNVQNGCG  F W  A  Y GDRG  K  PFTE+EP AAARSRHFIA GI LRCDRCHRDVVGPLFRC+HCPSF CCLECQ
Sbjct:  592 GVDTHGGNVQNGCGKSFLWSQARPYRGDRGECKVTPFTEQEPAAAARSRHFIADGIALRCDRCHRDVVGPLFRCVHCPSFACCLECQ 678          
BLAST of mRNA_H-elongata_contig117432.1362.1 vs. uniprot
Match: A0A4D9D9T2_9STRA (RING-type domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D9T2_9STRA)

HSP 1 Score: 103 bits (256), Expect = 1.000e-23
Identity = 47/90 (52.22%), Postives = 58/90 (64.44%), Query Frame = 1
Query:    1 GRDAHGGNVQNGCGARFDWLMAHHYVGDRGVRKK-VPFTEREPKAAARSRHFIAPGIPLRCDRCHRDVVGPLFRCIHCPSFVCCLECQVK 267
            G++AHGGN+QNGCG  FDW  A  YV D G ++  VPF E  P   AR  H I  G P++CD C   ++GPL  CI+CPSF CC+ CQ K
Sbjct:  481 GQNAHGGNIQNGCGQAFDWNDALLYVADIGEKRSIVPFQEVPPAEIARVEHQIMDGTPVKCDVCSAKIMGPLAMCINCPSFSCCIRCQNK 570          
BLAST of mRNA_H-elongata_contig117432.1362.1 vs. uniprot
Match: A0A0L0D5A8_THETB (RING-type domain-containing protein n=1 Tax=Thecamonas trahens ATCC 50062 TaxID=461836 RepID=A0A0L0D5A8_THETB)

HSP 1 Score: 82.0 bits (201), Expect = 2.930e-16
Identity = 40/94 (42.55%), Postives = 53/94 (56.38%), Query Frame = 1
Query:    1 GRDAHGGNVQNGCGARFDWLMAHHYVGDRG--VRKKVPFTEREPKAAARSRHFIAPG-----IPLRCDRCHRDVVGPLFRCIHCPSFVCCLECQ 261
            GR+ HGG+ Q+GCGA F+W  A  YV      +R    F    P+ + R+ H +  G     + LRCD C +D+ GP FRCI CP+F  CL CQ
Sbjct:  540 GRNYHGGDNQDGCGASFNWETAPAYVPATSSHIRVDTEFGTEAPEHSIRTEHILFAGTDGTAVRLRCDLCQQDIFGPEFRCIACPAFAVCLRCQ 633          
BLAST of mRNA_H-elongata_contig117432.1362.1 vs. uniprot
Match: A0A812RJH2_9DINO (RNF14 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812RJH2_9DINO)

HSP 1 Score: 74.3 bits (181), Expect = 1.340e-13
Identity = 38/88 (43.18%), Postives = 43/88 (48.86%), Query Frame = 1
Query:    1 GRDAHGGNVQNGCGARFDWLMAHHYVGDRGVRKKVPFTEREPKA-AARSRHFIAPGIPLRCDRCHRDVVGPLFRCIHCPSFVCCLECQ 261
            G D HGGN Q GCG RF W  A  Y      R       ++ K   A  RH        RC RCH+D+VGP FRCIHCP +  C  C 
Sbjct:  252 GEDTHGGNRQQGCGHRFQWDKARAYQAAPDSRPLPRLDVQDVKVRGAGIRHPFC-----RCSRCHQDIVGPRFRCIHCPDYNLCASCD 334          
BLAST of mRNA_H-elongata_contig117432.1362.1 vs. uniprot
Match: A0A814DIB6_9BILA (RBR-type E3 ubiquitin transferase n=4 Tax=Adineta steineri TaxID=433720 RepID=A0A814DIB6_9BILA)

HSP 1 Score: 74.3 bits (181), Expect = 1.520e-13
Identity = 38/96 (39.58%), Postives = 49/96 (51.04%), Query Frame = 1
Query:    1 GRDAHGGNVQNGCGARFDWLMAHHYVGDRGVRKKVPFTEREPKAAARSRHFIAPGIP------LRCDRCHRDVVGPLFRCIHCPSFVCCLECQVKG 270
            G+DAHGGNVQ+GCG +F+W  A  Y          P T  +PK          P IP      ++CD+C  DV G  F CIHCPS   C +C+ + 
Sbjct:  944 GQDAHGGNVQSGCGTKFNWAQAQQYT---------PSTTAQPKQKIVD--LPKPDIPVVHHNGIKCDQCQNDVNGIRFDCIHCPSLTFCEKCEEQA 1028          
BLAST of mRNA_H-elongata_contig117432.1362.1 vs. uniprot
Match: A0A818CU47_9BILA (RBR-type E3 ubiquitin transferase n=1 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A818CU47_9BILA)

HSP 1 Score: 73.9 bits (180), Expect = 2.010e-13
Identity = 35/90 (38.89%), Postives = 49/90 (54.44%), Query Frame = 1
Query:    1 GRDAHGGNVQNGCGARFDWLMAHHYVGDRGVRKKVPFTEREPKAAARSRHFIAPGIPLRCDRCHRDVVGPLFRCIHCPSFVCCLECQVKG 270
            G+DAHGGNVQ+GCGA+F+W  A +Y      + K    +  PK      H       ++CD C  D+VG  F C+HCPS   C +C+ + 
Sbjct:  444 GQDAHGGNVQSGCGAKFNWAQAQNYTAAATPQPKQTILDL-PKPENPVVHHNG----VKCDHCQNDLVGIRFDCVHCPSLTFCEKCEQQA 528          
BLAST of mRNA_H-elongata_contig117432.1362.1 vs. uniprot
Match: A0A813XJQ9_9BILA (RBR-type E3 ubiquitin transferase n=10 Tax=Rotaria sp. Silwood1 TaxID=2762511 RepID=A0A813XJQ9_9BILA)

HSP 1 Score: 73.9 bits (180), Expect = 2.080e-13
Identity = 35/90 (38.89%), Postives = 49/90 (54.44%), Query Frame = 1
Query:    1 GRDAHGGNVQNGCGARFDWLMAHHYVGDRGVRKKVPFTEREPKAAARSRHFIAPGIPLRCDRCHRDVVGPLFRCIHCPSFVCCLECQVKG 270
            G+DAHGGNVQ+GCGA+F+W  A +Y      + K    +  PK      H       ++CD C  D+VG  F C+HCPS   C +C+ + 
Sbjct: 1001 GQDAHGGNVQSGCGAKFNWAQAQNYTAAATPQPKQTILDL-PKPENPVVHHNG----VKCDHCQNDLVGIRFDCVHCPSLTFCEKCEQQA 1085          
BLAST of mRNA_H-elongata_contig117432.1362.1 vs. uniprot
Match: A0A815MAJ2_9BILA (RBR-type E3 ubiquitin transferase n=5 Tax=Rotaria TaxID=231623 RepID=A0A815MAJ2_9BILA)

HSP 1 Score: 72.8 bits (177), Expect = 5.300e-13
Identity = 34/87 (39.08%), Postives = 47/87 (54.02%), Query Frame = 1
Query:    1 GRDAHGGNVQNGCGARFDWLMAHHYVGDRGVRKKVPFTEREPKAAARSRHFIAPGIPLRCDRCHRDVVGPLFRCIHCPSFVCCLECQ 261
            G+DAHGGNVQ+GCGA+F+W  A  Y      + +    +  PK      H       ++CD C  DV+G  F C+HCPS   C +C+
Sbjct:  942 GQDAHGGNVQSGCGAKFNWAQAQQYAAAATNQPRQTIVDL-PKPENPVVHHDG----VKCDHCQNDVIGIRFDCVHCPSLTFCEKCE 1023          
BLAST of mRNA_H-elongata_contig117432.1362.1 vs. uniprot
Match: A0A814MX83_9BILA (RBR-type E3 ubiquitin transferase n=2 Tax=Rotaria sordida TaxID=392033 RepID=A0A814MX83_9BILA)

HSP 1 Score: 72.0 bits (175), Expect = 5.630e-13
Identity = 35/90 (38.89%), Postives = 48/90 (53.33%), Query Frame = 1
Query:    1 GRDAHGGNVQNGCGARFDWLMAHHYVGDRGVRKKVPFTEREPKAAARSRHFIAPGIPLRCDRCHRDVVGPLFRCIHCPSFVCCLECQVKG 270
            G+DAHGGN+Q+GCGA+F+W  A  Y      + K    +  PK      H       ++CD C  DVVG  F C+HCPS   C +C+ + 
Sbjct:  192 GQDAHGGNLQSGCGAKFNWAQAQQYNAAATPQPKQVILDL-PKPENPVVHHNG----VKCDHCQNDVVGIRFDCVHCPSLTYCEKCEQQA 276          
BLAST of mRNA_H-elongata_contig117432.1362.1 vs. uniprot
Match: A0A6B2L4W0_9EUKA (Uncharacterized protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L4W0_9EUKA)

HSP 1 Score: 72.0 bits (175), Expect = 8.900e-13
Identity = 35/89 (39.33%), Postives = 45/89 (50.56%), Query Frame = 1
Query:    1 GRDAHGGNVQNGCGARFDWLMAHHYVGDRGVRKKVPFTEREPKAAARSRHFIAPGIPLRCDRCHRDVVGPLFRCIHCPSFVCCLECQVK 267
            G D HGGN+QNGCG RF+W  +  Y        K    +  P    R+RH    G  + CD C + +VG  F C+HC SF  C  C+ K
Sbjct:  295 GSDYHGGNIQNGCGKRFNWSQSQPYKSTGLSGPKTVEFQPPPNPKQRTRH----GDWIPCDNCKQQIVGLRFSCVHCRSFNLCENCEFK 379          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117432.1362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5K3X2_9PHAE3.680e-4077.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A4D9D9T2_9STRA1.000e-2352.22RING-type domain-containing protein n=2 Tax=Monodo... [more]
A0A0L0D5A8_THETB2.930e-1642.55RING-type domain-containing protein n=1 Tax=Thecam... [more]
A0A812RJH2_9DINO1.340e-1343.18RNF14 protein n=1 Tax=Symbiodinium sp. CCMP2456 Ta... [more]
A0A814DIB6_9BILA1.520e-1339.58RBR-type E3 ubiquitin transferase n=4 Tax=Adineta ... [more]
A0A818CU47_9BILA2.010e-1338.89RBR-type E3 ubiquitin transferase n=1 Tax=Rotaria ... [more]
A0A813XJQ9_9BILA2.080e-1338.89RBR-type E3 ubiquitin transferase n=10 Tax=Rotaria... [more]
A0A815MAJ2_9BILA5.300e-1339.08RBR-type E3 ubiquitin transferase n=5 Tax=Rotaria ... [more]
A0A814MX83_9BILA5.630e-1338.89RBR-type E3 ubiquitin transferase n=2 Tax=Rotaria ... [more]
A0A6B2L4W0_9EUKA8.900e-1339.33Uncharacterized protein n=1 Tax=Arcella intermedia... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117432contigH-elongata_contig117432:352..1215 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue2.6e-13
Seed eggNOG ortholog529818.AMSG_02933T0
KEGG koko:K11971,ko:K11976
EggNOG free text desc.protein side chain deglutamylation
EggNOG OGsKOG1814@1,KOG1814@2759
EC2.3.2.31
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons2
Model size270
Cds size270
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929684.3667865-CDS-H-elongata_contig117432:351..5161622929684.3667865-CDS-H-elongata_contig117432:351..516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117432 352..516 -
1691679118.428254-CDS-H-elongata_contig117432:351..5161691679118.428254-CDS-H-elongata_contig117432:351..516Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117432 352..516 -
1622929684.392068-CDS-H-elongata_contig117432:1110..12151622929684.392068-CDS-H-elongata_contig117432:1110..1215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117432 1111..1215 -
1691679118.4386547-CDS-H-elongata_contig117432:1110..12151691679118.4386547-CDS-H-elongata_contig117432:1110..1215Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117432 1111..1215 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117432.1362.1prot_H-elongata_contig117432.1362.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117432 352..1215 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117432.1362.1

>prot_H-elongata_contig117432.1362.1 ID=prot_H-elongata_contig117432.1362.1|Name=mRNA_H-elongata_contig117432.1362.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=90bp
GRDAHGGNVQNGCGARFDWLMAHHYVGDRGVRKKVPFTEREPKAAARSRH
FIAPGIPLRCDRCHRDVVGPLFRCIHCPSFVCCLECQVKG
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mRNA from alignment at H-elongata_contig117432:352..1215-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117432.1362.1 ID=mRNA_H-elongata_contig117432.1362.1|Name=mRNA_H-elongata_contig117432.1362.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=864bp|location=Sequence derived from alignment at H-elongata_contig117432:352..1215- (Himanthalia elongata Himel1 dioecious)
GGAAGAGACGCCCATGGGGGCAACGTGCAAAACGGATGCGGCGCTCGCTT CGACTGGTTGATGGCCCACCACTATGTCGGCGATCGTGGGGTGCGCAAGA AGGTGGTGAGTTCGTGCCACAAACAAAACCCACCGTGCCCCGCGACAACT CCCGGCAGACCTAGACGATCACCCCCCCCCGCGCGCGCGCGCGCCGAGAG GTGGTAGATACGATCAAGCCCCGTGTGCGCGCTATATTAGAAACGCGCGG TGCGTACTTCGTGCGGCCTGTTTTTGTGTTTGTGTGTGCGTGTTTTTTAA TGGCGCCGTGGATTGTGGTGGCGGTGGCGAAAGTGGAAGACTGCGGGTAG GGGAGGAGTCTGGACCGTGCGAATCGCGCCGTGACGTTGATCGCACTGAC CATCCTTTGCGCGGGAAAGACAAAGGCAGTACTGTAGTAGGGCCTACGCT AGGAGGATTATTCCACAAATCCCACCTCGGTATTTCCTTGCCATTTATCT CTCTTTTTTTTTCGTTGGAAAAGGTCTTGTAGGAAGCCCGCCGCCCCTGT GTGGAAACCCCTCAACGATCGATTGGCCGATCCCCTCCCCCCCCACTCTC GAAATCTCAACGGATTTTAGTTTAAAGTCTAGGCATCTCCCGTCTTTTTC CCCCCGGTGGGTATCTGTGGTCTTTTGTCGTCTTGTGTCGTTTTGACAGC CCTTCACAGAAAGAGAGCCCAAGGCCGCCGCTCGCTCGCGGCACTTTATC GCTCCGGGTATCCCGCTCCGCTGCGACCGCTGTCACCGGGACGTGGTGGG GCCTCTCTTCCGCTGTATCCACTGCCCCTCCTTCGTGTGTTGCCTCGAGT GCCAGGTGAAAGGC
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Coding sequence (CDS) from alignment at H-elongata_contig117432:352..1215-

>mRNA_H-elongata_contig117432.1362.1 ID=mRNA_H-elongata_contig117432.1362.1|Name=mRNA_H-elongata_contig117432.1362.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=540bp|location=Sequence derived from alignment at H-elongata_contig117432:352..1215- (Himanthalia elongata Himel1 dioecious)
GGAAGAGACGCCCATGGGGGCAACGTGCAAAACGGATGCGGCGCTCGCTT
CGACTGGTTGATGGCCCACCACTATGTCGGCGATCGTGGGGTGCGCAAGA
AGGTGGGAAGAGACGCCCATGGGGGCAACGTGCAAAACGGATGCGGCGCT
CGCTTCGACTGGTTGATGGCCCACCACTATGTCGGCGATCGTGGGGTGCG
CAAGAAGGTGCCCTTCACAGAAAGAGAGCCCAAGGCCGCCGCTCGCTCGC
GGCACTTTATCGCTCCGGGTATCCCGCTCCGCTGCGACCGCTGTCACCGG
GACGTGGTGGGGCCTCTCTTCCGCTGTATCCACTGCCCCTCCTTCGTGTG
TTGCCTCGAGTGCCAGGTGAAAGGCCCCTTCACAGAAAGAGAGCCCAAGG
CCGCCGCTCGCTCGCGGCACTTTATCGCTCCGGGTATCCCGCTCCGCTGC
GACCGCTGTCACCGGGACGTGGTGGGGCCTCTCTTCCGCTGTATCCACTG
CCCCTCCTTCGTGTGTTGCCTCGAGTGCCAGGTGAAAGGC
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