mRNA_H-elongata_contig11728.1353.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11728.1353.1
Unique NamemRNA_H-elongata_contig11728.1353.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11728.1353.1 vs. uniprot
Match: D8LQF3_ECTSI (Phosphoglycerate mutase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQF3_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 8.950e-54
Identity = 86/100 (86.00%), Postives = 93/100 (93.00%), Query Frame = 1 
Query:    1 TKDRFLPEWENEIVPAIKSGKRVLIAAHGNTIRGLCQHLDKISDDDITGLDIPTGVPLVYELDKNLNPIKHPDALPPLSARYLGDVSGIRARIEAVKAQT 300
            TKDRFL EWENEI PAIKSGKR+LI AHGNTIRGLCQHLD+ISD+DI GLDIPTGVPLV+ LDK+L PI HP+A+PPLSARYLGDVSGIRARIEAVKAQT
Sbjct:  227 TKDRFLVEWENEIAPAIKSGKRILIVAHGNTIRGLCQHLDEISDEDIVGLDIPTGVPLVFTLDKDLKPITHPEAIPPLSARYLGDVSGIRARIEAVKAQT 326
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BLAST of mRNA_H-elongata_contig11728.1353.1 vs. uniprot
Match: W7TKJ0_9STRA (Phosphoglycerate mutase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKJ0_9STRA)

HSP 1 Score: 149 bits (375), Expect = 8.020e-42
Identity = 71/104 (68.27%), Postives = 83/104 (79.81%), Query Frame = 1 
Query:    1 TKDRFLPEWENEIVPAIKSGKRVLIAAHGNTIRGLCQHLDKISDDDITGLDIPTGVPLVYELDKNLNPIKHPDALPPLSARYLGDVSGIRARIEAVKAQTASKK 312
            TK RFLP WENEI+P IK+GKR++IAAHGNTIR L QHLD IS+D I GL++PTGVPL+YELD+N+ PIKH DA+ PL   YLGD   IRA+IE V AQT  KK
Sbjct:  217 TKARFLPLWENEIIPDIKAGKRIVIAAHGNTIRALVQHLDNISEDVICGLNVPTGVPLIYELDENMKPIKHADAIAPLQGHYLGDQEKIRAKIEGVAAQTGGKK 320
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BLAST of mRNA_H-elongata_contig11728.1353.1 vs. uniprot
Match: A0A7S4W8W5_9STRA (Phosphoglycerate mutase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W8W5_9STRA)

HSP 1 Score: 145 bits (367), Expect = 6.890e-41
Identity = 67/100 (67.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:    1 TKDRFLPEWENEIVPAIKSGKRVLIAAHGNTIRGLCQHLDKISDDDITGLDIPTGVPLVYELDKNLNPIKHPDALPPLSARYLGDVSGIRARIEAVKAQT 300
            T+DRF+P+WEN + PAI+ GK++LIAAHGNT+R L +HLD IS+D+ITGL+IPTGVPLVYELD++L PI HPDA+ PL  RYLGD   I+ARI AV +QT
Sbjct:  211 TEDRFMPDWENAMAPAIRDGKKLLIAAHGNTLRALVKHLDGISEDEITGLNIPTGVPLVYELDEDLKPIPHPDAIAPLQGRYLGDQESIKARIGAVASQT 310
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BLAST of mRNA_H-elongata_contig11728.1353.1 vs. uniprot
Match: A0A6V1KH64_HETAK (Phosphoglycerate mutase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1KH64_HETAK)

HSP 1 Score: 142 bits (359), Expect = 2.930e-40
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = 1 
Query:    1 TKDRFLPEWENEIVPAIKSGKRVLIAAHGNTIRGLCQHLDKISDDDITGLDIPTGVPLVYELDKNLNPIKHPDALPPLSARYLGDVSGIRARIEAVKAQTASK 309
            T DR LP WE EI P IKSGKRVLIAAHGN++R + +HLD ISD+DITGL+IPTGVPL YELD NL PI H DA+ PL+ RYLG+   IRARIE VK QT +K
Sbjct:  156 TLDRCLPCWETEIAPMIKSGKRVLIAAHGNSLRAIVKHLDGISDEDITGLNIPTGVPLAYELDDNLRPIPHADAIAPLTGRYLGNQEEIRARIEGVKNQTKAK 258
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BLAST of mRNA_H-elongata_contig11728.1353.1 vs. uniprot
Match: A0A7S2Y6I9_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y6I9_9STRA)

HSP 1 Score: 138 bits (348), Expect = 4.590e-40
Identity = 64/100 (64.00%), Postives = 81/100 (81.00%), Query Frame = 1 
Query:    1 TKDRFLPEWENEIVPAIKSGKRVLIAAHGNTIRGLCQHLDKISDDDITGLDIPTGVPLVYELDKNLNPIKHPDALPPLSARYLGDVSGIRARIEAVKAQT 300
            T++RF+ EWEN +VP IKSG R++IAAHGNT+R L +HLD IS D+ITGL+IPTGVPLVYELD +L PI HPD + PL+ RYLG++  ++ RI AV AQT
Sbjct:   39 TEERFMSEWENVLVPEIKSGTRIIIAAHGNTLRALVKHLDNISPDEITGLNIPTGVPLVYELDDDLKPIPHPDCIAPLTGRYLGNLEEVKQRIGAVAAQT 138
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BLAST of mRNA_H-elongata_contig11728.1353.1 vs. uniprot
Match: A0A7S2DWA9_9STRA (Phosphoglycerate mutase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2DWA9_9STRA)

HSP 1 Score: 143 bits (360), Expect = 8.830e-40
Identity = 66/100 (66.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:    1 TKDRFLPEWENEIVPAIKSGKRVLIAAHGNTIRGLCQHLDKISDDDITGLDIPTGVPLVYELDKNLNPIKHPDALPPLSARYLGDVSGIRARIEAVKAQT 300
            T+DRF+P+WEN +VPAIKSGK+++IAAHGNT+R L +HLD IS+D+I GL+IPT VPLVYELD+++ PI HPDA+ PL   YLGD   IRARI AV +QT
Sbjct:  217 TEDRFMPDWENVMVPAIKSGKKIIIAAHGNTLRALVKHLDGISEDEICGLNIPTAVPLVYELDEDMKPIPHPDAIAPLQGHYLGDQEDIRARIGAVASQT 316
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BLAST of mRNA_H-elongata_contig11728.1353.1 vs. uniprot
Match: A0A7S2HTW5_9STRA (Phosphoglycerate mutase n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HTW5_9STRA)

HSP 1 Score: 139 bits (350), Expect = 1.300e-38
Identity = 67/100 (67.00%), Postives = 77/100 (77.00%), Query Frame = 1 
Query:    1 TKDRFLPEWENEIVPAIKSGKRVLIAAHGNTIRGLCQHLDKISDDDITGLDIPTGVPLVYELDKNLNPIKHPDALPPLSARYLGDVSGIRARIEAVKAQT 300
            TK+R LP WE+ IVP I SGK VLIAAHGN++R L  HLD IS +DITGL+IPT  PLVYELD N+ PI HPDA+ PL+ RY+GD   IRARIE VK QT
Sbjct:  185 TKERVLPYWESNIVPEIASGKNVLIAAHGNSLRALVMHLDNISPEDITGLNIPTATPLVYELDDNMQPIPHPDAIAPLTGRYVGDQEAIRARIEGVKNQT 284
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BLAST of mRNA_H-elongata_contig11728.1353.1 vs. uniprot
Match: A0A7S2B1E4_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2B1E4_9STRA)

HSP 1 Score: 137 bits (344), Expect = 2.050e-38
Identity = 65/100 (65.00%), Postives = 79/100 (79.00%), Query Frame = 1 
Query:    1 TKDRFLPEWENEIVPAIKSGKRVLIAAHGNTIRGLCQHLDKISDDDITGLDIPTGVPLVYELDKNLNPIKHPDALPPLSARYLGDVSGIRARIEAVKAQT 300
            T DR LP WENEIVP IKSGK++LIAAHGN++R L  HLD IS++DIT L+IPT +PLVYELD ++ PI HPD + P+S RY+G+   IRARIE VK QT
Sbjct:  122 TADRVLPYWENEIVPQIKSGKKLLIAAHGNSLRALVMHLDGISEEDITELNIPTAIPLVYELDDDMKPIPHPDGIGPVSGRYVGNQDAIRARIEGVKNQT 221
[Close]
BLAST of mRNA_H-elongata_contig11728.1353.1 vs. uniprot
Match: A0A6U1NFE0_9STRA (Phosphoglycerate mutase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NFE0_9STRA)

HSP 1 Score: 137 bits (344), Expect = 5.430e-38
Identity = 67/103 (65.05%), Postives = 78/103 (75.73%), Query Frame = 1 
Query:    1 TKDRFLPEWENEIVPAIKSGKRVLIAAHGNTIRGLCQHLDKISDDDITGLDIPTGVPLVYELDKNLNPIKHPDALPPLSARYLGDVSGIRARIEAVKAQTASK 309
            T+DR    W+ EI PAIK+GK +LIAAHGN++R L + LD IS DDITGL+IPT VPLVYELD +LNPI HPDA+ PL  RYLGD   +RARIE VK QT  K
Sbjct:  157 TEDRVAIYWDQEIAPAIKAGKTILIAAHGNSLRALVKRLDNISADDITGLNIPTAVPLVYELDADLNPIAHPDAIGPLKGRYLGDQEAVRARIEGVKNQTKGK 259
[Close]
BLAST of mRNA_H-elongata_contig11728.1353.1 vs. uniprot
Match: A0A7S1VKT9_9STRA (Phosphoglycerate mutase n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VKT9_9STRA)

HSP 1 Score: 138 bits (348), Expect = 5.460e-38
Identity = 65/100 (65.00%), Postives = 82/100 (82.00%), Query Frame = 1 
Query:    1 TKDRFLPEWENEIVPAIKSGKRVLIAAHGNTIRGLCQHLDKISDDDITGLDIPTGVPLVYELDKNLNPIKHPDALPPLSARYLGDVSGIRARIEAVKAQT 300
            T++RF+PEW  ++ P IKSGK+VLIAAHGNT+R L +HLD IS+++I GL+IPTGVPLVYELD++L PI+H DA+PPL   YLGD S I+ RI AV AQT
Sbjct:  217 TEERFMPEWLTDMAPTIKSGKKVLIAAHGNTLRALVKHLDGISEEEIPGLNIPTGVPLVYELDEDLKPIRHKDAIPPLQGHYLGDQSEIQQRIGAVMAQT 316
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11728.1353.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQF3_ECTSI8.950e-5486.00Phosphoglycerate mutase n=2 Tax=Ectocarpus TaxID=2... [more]
W7TKJ0_9STRA8.020e-4268.27Phosphoglycerate mutase n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S4W8W5_9STRA6.890e-4167.00Phosphoglycerate mutase n=1 Tax=Ditylum brightwell... [more]
A0A6V1KH64_HETAK2.930e-4068.93Phosphoglycerate mutase n=1 Tax=Heterosigma akashi... [more]
A0A7S2Y6I9_9STRA4.590e-4064.00Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A7S2DWA9_9STRA8.830e-4066.00Phosphoglycerate mutase n=1 Tax=Helicotheca tamesi... [more]
A0A7S2HTW5_9STRA1.300e-3867.00Phosphoglycerate mutase n=2 Tax=Dictyocha speculum... [more]
A0A7S2B1E4_9STRA2.050e-3865.00Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6U1NFE0_9STRA5.430e-3865.05Phosphoglycerate mutase n=1 Tax=Fibrocapsa japonic... [more]
A0A7S1VKT9_9STRA5.460e-3865.00Phosphoglycerate mutase n=1 Tax=Grammatophora ocea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11728contigH-elongata_contig11728:7635..8480 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size312
Cds size207
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11728.1353.1prot_H-elongata_contig11728.1353.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11728 7658..8398 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929683.293408-UTR-H-elongata_contig11728:7634..76571622929683.293408-UTR-H-elongata_contig11728:7634..7657Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11728 7635..7657 -
1691679117.9659655-UTR-H-elongata_contig11728:7634..76571691679117.9659655-UTR-H-elongata_contig11728:7634..7657Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11728 7635..7657 -
1622929683.3339293-UTR-H-elongata_contig11728:8398..84801622929683.3339293-UTR-H-elongata_contig11728:8398..8480Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11728 8399..8480 -
1691679117.9878025-UTR-H-elongata_contig11728:8398..84801691679117.9878025-UTR-H-elongata_contig11728:8398..8480Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11728 8399..8480 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929683.310665-CDS-H-elongata_contig11728:7657..77831622929683.310665-CDS-H-elongata_contig11728:7657..7783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11728 7658..7783 -
1691679117.9730947-CDS-H-elongata_contig11728:7657..77831691679117.9730947-CDS-H-elongata_contig11728:7657..7783Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11728 7658..7783 -
1622929683.3231642-CDS-H-elongata_contig11728:8317..83981622929683.3231642-CDS-H-elongata_contig11728:8317..8398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11728 8318..8398 -
1691679117.980507-CDS-H-elongata_contig11728:8317..83981691679117.980507-CDS-H-elongata_contig11728:8317..8398Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11728 8318..8398 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11728.1353.1

>prot_H-elongata_contig11728.1353.1 ID=prot_H-elongata_contig11728.1353.1|Name=mRNA_H-elongata_contig11728.1353.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=69bp
MATPSAASANTSTRSPTMTSRAWTSRPACPLCTSWTRTSIPSSTPTLCRP
SRRATWETCRGSALGSRP*
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mRNA from alignment at H-elongata_contig11728:7635..8480-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11728.1353.1 ID=mRNA_H-elongata_contig11728.1353.1|Name=mRNA_H-elongata_contig11728.1353.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=846bp|location=Sequence derived from alignment at H-elongata_contig11728:7635..8480- (Himanthalia elongata Himel1 dioecious)
ACGAAGGACCGTTTCCTGCCCGAATGGGAGAATGAGATTGTCCCCGCCAT
CAAGAGCGGCAAACGCGTGCTGATCGCGGCGCATGGCAACACCATCCGCG
GCCTCTGCCAACACCTCGACAAGATCTCCGACGATGACATCACGGGCTTG
GACATCCCGACCGGTGAGGAAGAGGCAGAGGGAGGCGTTTATCGTGAAAT
CTTGTTCCCCCCCTCCCCCTCCGAGTTGACGAAGCACGCTTGCGAGGGGT
GCGCGGCGGGGAACGATGAAGGATGTTGTAGGAGGCTGGATGATTTTCTG
GCTCACTCTTGACTTGGATGTGCGAGCGGCGAAGACTGAAATAGCCTGCT
GTGAGAGCAATATATCCCGATTCCCCGTGTCCTCCGACAAAATAAATCGC
AATCGTTGCTCTTCTTCGTTTCGCCATACGGCACACTGGTTACCCCCCAC
CATACGGCACACCCGGTATCGATGCGGTGAACGCGACACACTGGTTATCC
CTCGCCCCCTACTCGCGCTCAGAGCCCACGTCAGTCAATGATACCGTTCG
CCCCCCTCCCCCCTCTTCAAATCCCGTGGCCATAGCTATTCTTGATCACG
CGCAGCCGCATTTCAGCATCGTACATATTTGGACGCTTTTGAGGCCGTAG
AGTTTTTGTTTCTTTCTTTCTTTCTTCGCCCTCCCGTCGCAAAACAGGCG
TGCCCCTTGTGTACGAGCTGGACAAGAACCTCAATCCCATCAAGCACCCC
GACGCTTTGCCGCCCCTCTCGGCGCGCTACCTGGGAGACGTGTCGGGGAT
CCGCGCTAGGATCGAGGCCGTGAAGGCACAGACGGCTTCGAAGAAG
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Coding sequence (CDS) from alignment at H-elongata_contig11728:7635..8480-

>mRNA_H-elongata_contig11728.1353.1 ID=mRNA_H-elongata_contig11728.1353.1|Name=mRNA_H-elongata_contig11728.1353.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=414bp|location=Sequence derived from alignment at H-elongata_contig11728:7635..8480- (Himanthalia elongata Himel1 dioecious)
ATGGCAACACCATCCGCGGCCTCTGCCAACACCTCGACAAGATCTCCGAC
GATGACATCACGGGCTTGGACATCCCGACCGATGGCAACACCATCCGCGG
CCTCTGCCAACACCTCGACAAGATCTCCGACGATGACATCACGGGCTTGG
ACATCCCGACCGGCGTGCCCCTTGTGTACGAGCTGGACAAGAACCTCAAT
CCCATCAAGCACCCCGACGCTTTGCCGCCCCTCTCGGCGCGCTACCTGGG
AGACGTGTCGGGGATCCGCGCTAGGATCGAGGCCGTGAGCGTGCCCCTTG
TGTACGAGCTGGACAAGAACCTCAATCCCATCAAGCACCCCGACGCTTTG
CCGCCCCTCTCGGCGCGCTACCTGGGAGACGTGTCGGGGATCCGCGCTAG
GATCGAGGCCGTGA
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