mRNA_H-elongata_contig117233.1347.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117233.1347.1
Unique NamemRNA_H-elongata_contig117233.1347.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig117233.1347.1 vs. uniprot
Match: A0A6H5KC18_9PHAE (PKS_ER domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KC18_9PHAE)

HSP 1 Score: 200 bits (508), Expect = 2.420e-61
Identity = 91/107 (85.05%), Postives = 99/107 (92.52%), Query Frame = 1
Query:    1 VLTQVGAVGICGSDVHYLKHMRCADFVVEKPMVIGHEAAGIVAEVGSAVLGLSPGDRVALEPGIPCRLCGHCKSGSYNLCETMAFHATPPVHGSLARFVTHPSDFCF 321
            V  +VGAVGICGSDVHYLKHMRCADFVV++PMVIGHEAAG+VAEVGSAV GL+ GD VALEPG+PCRLC HCK+GSYNLCE M FHATPPVHGSLARFVTHPSDFC+
Sbjct:   38 VRVRVGAVGICGSDVHYLKHMRCADFVVKQPMVIGHEAAGVVAEVGSAVRGLACGDPVALEPGVPCRLCEHCKTGSYNLCEKMEFHATPPVHGSLARFVTHPSDFCY 144          
BLAST of mRNA_H-elongata_contig117233.1347.1 vs. uniprot
Match: A0A1B6MMS1_9HEMI (ADH_N domain-containing protein (Fragment) n=1 Tax=Graphocephala atropunctata TaxID=36148 RepID=A0A1B6MMS1_9HEMI)

HSP 1 Score: 160 bits (406), Expect = 3.210e-48
Identity = 70/107 (65.42%), Postives = 84/107 (78.50%), Query Frame = 1
Query:    1 VLTQVGAVGICGSDVHYLKHMRCADFVVEKPMVIGHEAAGIVAEVGSAVLGLSPGDRVALEPGIPCRLCGHCKSGSYNLCETMAFHATPPVHGSLARFVTHPSDFCF 321
            VL Q+  VGICGSDVHY  H RCADF+++ PM++GHEA+G VA+VG  V  L PGDRVA+EPG+PCRLC +CK G YNLC  M F ATPPVHG+L R+ TH +DFCF
Sbjct:   31 VLLQMACVGICGSDVHYWVHGRCADFILKSPMIMGHEASGTVAKVGKNVKHLKPGDRVAVEPGVPCRLCRYCKEGRYNLCYDMVFCATPPVHGNLTRYYTHAADFCF 137          
BLAST of mRNA_H-elongata_contig117233.1347.1 vs. uniprot
Match: A0A444YY10_ARAHY (Uncharacterized protein n=1 Tax=Arachis hypogaea TaxID=3818 RepID=A0A444YY10_ARAHY)

HSP 1 Score: 160 bits (406), Expect = 2.160e-47
Identity = 74/107 (69.16%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 VLTQVGAVGICGSDVHYLKHMRCADFVVEKPMVIGHEAAGIVAEVGSAVLGLSPGDRVALEPGIPCRLCGHCKSGSYNLCETMAFHATPPVHGSLARFVTHPSDFCF 321
            V  ++ AVGICGSDVHYLK +RCA FVVE+PMVIGHE AGI+ EVGS V  L PGDRVA+EPGI C  C HCK G YNLC  M F ATPPVHGSLA  + HP+D CF
Sbjct:   43 VRVRMKAVGICGSDVHYLKTLRCAHFVVEEPMVIGHECAGIIEEVGSEVKALVPGDRVAIEPGISCWRCDHCKQGRYNLCPDMKFFATPPVHGSLANQIVHPADLCF 149          
BLAST of mRNA_H-elongata_contig117233.1347.1 vs. uniprot
Match: A0A067EYF3_CITSI (PKS_ER domain-containing protein n=15 Tax=Citrus TaxID=2706 RepID=A0A067EYF3_CITSI)

HSP 1 Score: 162 bits (411), Expect = 2.520e-47
Identity = 75/107 (70.09%), Postives = 84/107 (78.50%), Query Frame = 1
Query:    1 VLTQVGAVGICGSDVHYLKHMRCADFVVEKPMVIGHEAAGIVAEVGSAVLGLSPGDRVALEPGIPCRLCGHCKSGSYNLCETMAFHATPPVHGSLARFVTHPSDFCF 321
            VL ++ AVGICGSDVHYLK +RCADFVV++PMVIGHE AG++ +VGS V  L PGDRVALEPGI C  C HCK G YNLC  M F ATPPVHGSLA  V HP+D CF
Sbjct:   44 VLVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEKVGSEVKTLVPGDRVALEPGISCWRCDHCKGGRYNLCPEMKFFATPPVHGSLANQVVHPADLCF 150          
BLAST of mRNA_H-elongata_contig117233.1347.1 vs. uniprot
Match: UPI001920FF1B (sorbitol dehydrogenase n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=UPI001920FF1B)

HSP 1 Score: 159 bits (401), Expect = 2.810e-47
Identity = 75/107 (70.09%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 VLTQVGAVGICGSDVHYLKHMRCADFVVEKPMVIGHEAAGIVAEVGSAVLGLSPGDRVALEPGIPCRLCGHCKSGSYNLCETMAFHATPPVHGSLARFVTHPSDFCF 321
            V  ++ AVGICGSDVHYLK MRCADFVV++PMVIGHE AGI+ E+GS V  L PGDRVALEPGI C  C  CK G YNLC  M F ATPPVHGSLA  V HP+D CF
Sbjct:   26 VRVRMKAVGICGSDVHYLKTMRCADFVVKEPMVIGHECAGIIEEIGSEVKHLVPGDRVALEPGISCWRCDLCKEGRYNLCPEMKFFATPPVHGSLAHQVVHPADLCF 132          
BLAST of mRNA_H-elongata_contig117233.1347.1 vs. uniprot
Match: A0A2Z6NCB9_TRISU (PKS_ER domain-containing protein (Fragment) n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6NCB9_TRISU)

HSP 1 Score: 161 bits (407), Expect = 3.120e-47
Identity = 74/107 (69.16%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 VLTQVGAVGICGSDVHYLKHMRCADFVVEKPMVIGHEAAGIVAEVGSAVLGLSPGDRVALEPGIPCRLCGHCKSGSYNLCETMAFHATPPVHGSLARFVTHPSDFCF 321
            V  ++ AVGICGSDVHYLK MRCADF+V++PMVIGHE AGI+ EVGS V  L PGDRVA+EPGI C  C HCK G YNLC  M F ATPPVHGSLA  + HP+D CF
Sbjct:   40 VRIRMKAVGICGSDVHYLKTMRCADFIVKEPMVIGHECAGIIEEVGSHVQNLVPGDRVAIEPGISCWRCDHCKLGRYNLCPEMKFFATPPVHGSLANRIVHPADLCF 146          
BLAST of mRNA_H-elongata_contig117233.1347.1 vs. uniprot
Match: A0A7C9CL95_OPUST (ADH_N domain-containing protein (Fragment) n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A7C9CL95_OPUST)

HSP 1 Score: 159 bits (401), Expect = 3.470e-47
Identity = 74/107 (69.16%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 VLTQVGAVGICGSDVHYLKHMRCADFVVEKPMVIGHEAAGIVAEVGSAVLGLSPGDRVALEPGIPCRLCGHCKSGSYNLCETMAFHATPPVHGSLARFVTHPSDFCF 321
            V  ++ AVGICGSDVHYLK +RCADFVV++PMVIGHE AG++ EVGS V  L PGDRVALEPGI C  C  CK G YNLC  M F ATPPVHGSLA  V HP+D CF
Sbjct:   41 VRVRMKAVGICGSDVHYLKTLRCADFVVKEPMVIGHECAGVIEEVGSEVKSLVPGDRVALEPGISCWRCNLCKDGRYNLCPEMKFFATPPVHGSLANQVVHPADLCF 147          
BLAST of mRNA_H-elongata_contig117233.1347.1 vs. uniprot
Match: UPI001BF691EB (Uncharacterized protein n=2 Tax=Carya illinoinensis TaxID=32201 RepID=UPI001BF691EB)

HSP 1 Score: 160 bits (405), Expect = 3.820e-47
Identity = 76/107 (71.03%), Postives = 82/107 (76.64%), Query Frame = 1
Query:    1 VLTQVGAVGICGSDVHYLKHMRCADFVVEKPMVIGHEAAGIVAEVGSAVLGLSPGDRVALEPGIPCRLCGHCKSGSYNLCETMAFHATPPVHGSLARFVTHPSDFCF 321
            V  ++ AVGICGSDVHYLK MRCADF+V++PMVIGHE AGI+ EVGS V  L PGDRVALEPGI C  C  CK G YNLC  M F ATPPVHGSLA  V HPSD CF
Sbjct:   47 VRVRMKAVGICGSDVHYLKTMRCADFIVKEPMVIGHECAGIIEEVGSEVKTLLPGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPSDLCF 153          
BLAST of mRNA_H-elongata_contig117233.1347.1 vs. uniprot
Match: A0A6V7MCU4_9HYME (ADH_N domain-containing protein (Fragment) n=1 Tax=Bracon brevicornis TaxID=1563983 RepID=A0A6V7MCU4_9HYME)

HSP 1 Score: 155 bits (392), Expect = 3.870e-47
Identity = 67/107 (62.62%), Postives = 83/107 (77.57%), Query Frame = 1
Query:    1 VLTQVGAVGICGSDVHYLKHMRCADFVVEKPMVIGHEAAGIVAEVGSAVLGLSPGDRVALEPGIPCRLCGHCKSGSYNLCETMAFHATPPVHGSLARFVTHPSDFCF 321
            VL ++G VGICGSDVHYL H R  DF+VEKPM+IGHE++G +A++G  V  L  GDRVA+EPG+ CR C +CK+G YNLC+ M F ATPPVHGSL RF  H +DFC+
Sbjct:    1 VLVEMGCVGICGSDVHYLVHGRIGDFIVEKPMIIGHESSGTIAKIGKNVKNLKVGDRVAIEPGVCCRTCNYCKTGRYNLCKEMIFCATPPVHGSLRRFYKHAADFCY 107          
BLAST of mRNA_H-elongata_contig117233.1347.1 vs. uniprot
Match: A0A2G5CSK0_AQUCA (PKS_ER domain-containing protein n=7 Tax=Thalictroideae TaxID=1463137 RepID=A0A2G5CSK0_AQUCA)

HSP 1 Score: 163 bits (412), Expect = 4.170e-47
Identity = 75/107 (70.09%), Postives = 84/107 (78.50%), Query Frame = 1
Query:    1 VLTQVGAVGICGSDVHYLKHMRCADFVVEKPMVIGHEAAGIVAEVGSAVLGLSPGDRVALEPGIPCRLCGHCKSGSYNLCETMAFHATPPVHGSLARFVTHPSDFCF 321
            V   + AVGICGSDVHYLK MRCADF+V++PMVIGHE AGI+ EVG+ V  L+PGDRVALEPGI C  C +CK GSYNLC  M F ATPPVHGSLA  V HP+D CF
Sbjct:   36 VKINMKAVGICGSDVHYLKTMRCADFIVKEPMVIGHECAGIIEEVGNEVKSLTPGDRVALEPGISCWRCSYCKDGSYNLCPDMKFFATPPVHGSLANQVVHPADLCF 142          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117233.1347.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KC18_9PHAE2.420e-6185.05PKS_ER domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A1B6MMS1_9HEMI3.210e-4865.42ADH_N domain-containing protein (Fragment) n=1 Tax... [more]
A0A444YY10_ARAHY2.160e-4769.16Uncharacterized protein n=1 Tax=Arachis hypogaea T... [more]
A0A067EYF3_CITSI2.520e-4770.09PKS_ER domain-containing protein n=15 Tax=Citrus T... [more]
UPI001920FF1B2.810e-4770.09sorbitol dehydrogenase n=1 Tax=Hibiscus syriacus T... [more]
A0A2Z6NCB9_TRISU3.120e-4769.16PKS_ER domain-containing protein (Fragment) n=1 Ta... [more]
A0A7C9CL95_OPUST3.470e-4769.16ADH_N domain-containing protein (Fragment) n=2 Tax... [more]
UPI001BF691EB3.820e-4771.03Uncharacterized protein n=2 Tax=Carya illinoinensi... [more]
A0A6V7MCU4_9HYME3.870e-4762.62ADH_N domain-containing protein (Fragment) n=1 Tax... [more]
A0A2G5CSK0_AQUCA4.170e-4770.09PKS_ER domain-containing protein n=7 Tax=Thalictro... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117233contigH-elongata_contig117233:3..1532 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size321
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117233.1347.1prot_H-elongata_contig117233.1347.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117233 26..1492 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929682.85232-UTR-H-elongata_contig117233:2..251622929682.85232-UTR-H-elongata_contig117233:2..25Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117233 3..25 -
1691679117.8395479-UTR-H-elongata_contig117233:2..251691679117.8395479-UTR-H-elongata_contig117233:2..25Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117233 3..25 -
1622929682.913012-UTR-H-elongata_contig117233:1492..15321622929682.913012-UTR-H-elongata_contig117233:1492..1532Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117233 1493..1532 -
1691679117.8854094-UTR-H-elongata_contig117233:1492..15321691679117.8854094-UTR-H-elongata_contig117233:1492..1532Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117233 1493..1532 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929682.8681526-CDS-H-elongata_contig117233:25..561622929682.8681526-CDS-H-elongata_contig117233:25..56Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117233 26..56 -
1691679117.848125-CDS-H-elongata_contig117233:25..561691679117.848125-CDS-H-elongata_contig117233:25..56Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117233 26..56 -
1622929682.8829138-CDS-H-elongata_contig117233:572..7071622929682.8829138-CDS-H-elongata_contig117233:572..707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117233 573..707 -
1691679117.8600757-CDS-H-elongata_contig117233:572..7071691679117.8600757-CDS-H-elongata_contig117233:572..707Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117233 573..707 -
1622929682.89764-CDS-H-elongata_contig117233:1400..14921622929682.89764-CDS-H-elongata_contig117233:1400..1492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117233 1401..1492 -
1691679117.8686733-CDS-H-elongata_contig117233:1400..14921691679117.8686733-CDS-H-elongata_contig117233:1400..1492Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117233 1401..1492 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117233.1347.1

>prot_H-elongata_contig117233.1347.1 ID=prot_H-elongata_contig117233.1347.1|Name=mRNA_H-elongata_contig117233.1347.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MCTTSSTCGAPTLSWRSPWSSATRRPASWRRWDLRCWACLPETESPSSRA
FPVGSVATASPGATIFARRWRSMLPRPYTDPSPVS*
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mRNA from alignment at H-elongata_contig117233:3..1532-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117233.1347.1 ID=mRNA_H-elongata_contig117233.1347.1|Name=mRNA_H-elongata_contig117233.1347.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1530bp|location=Sequence derived from alignment at H-elongata_contig117233:3..1532- (Himanthalia elongata Himel1 dioecious)
GTGTTAACACAGGTTGGCGCCGTGGGTATCTGCGGCAGCGATGTGCACTA CCTCAAGCACATGCGGTGCGCCGACTTTGTCGTGGAGAAGCCCATGGTCA TCGGCCACGAGGCGGCCGGCATCGTGGCGGAGGTGCGATGGGCGGCGAGA CACGGTACAAACCCCACGATTGACTATGTGCTGCTCTCGAGCGCATCGCG GCGTGGGCCTTGGGATTTAGGCGTAGGCGTTCGCCGCCTTGGGGAGAAGG GGTTCACAAGAACGCATACCATACCGCCCCATTTATCGCTAATAATATCA TACGAATAATATCTTACTAATAATATAATATTATTAATATTGTGCCAACA ATATCGTGCTAATAATATACCACTAATAATACCATGCTAATAATAAGATA CTAATAATAACATACTAATAATAACATACTAATAATAACATACTAATAAT ACCATACTAATAATACCATACTAATAATACCATACTAATAATAACATACT AATAATAATATACTAATAATAACATACTAATAATAACATACTAATAATAA TATACTAATAATAACATACTAATAATAACATACTAATACTAACATACTAA TAATAACATACTAATAATAACATACTAATAATAACATACTAAGAATGGGG CCGAGAAAGAGTCGATAGCATCGTTCGTTCAGCGCCGCCGCGCACACACG CATGCCACCCTTCTTGACCCAGCCCGGCGGTACTGTAGTCCACGAAGGTT AGGGATCGTAGATCCACAAAGTGACGACGATCTCCGATACCTTTTGAAAT GATTATTTTTCATGTATTTTTTTAGGTGGGATCTGCGGTGTTGGGCCTGT CTCCCGGAGACCGAGTCGCCCTCGAGCCGGGCATTCCCTGTCGGCTCTGT GGCCACTGCAAGTCCGGGAGCTACAATCTTTGCGAGACGATGGCGTTCCA TGCTACCCCGGTGCGGTGACGAACCCCTGTATTGTACTTGGCTGTACGCT GCATTTATGAAGATAATACAATATTAGACTATATATATTTATGTATATAT TTAGTCTAATTTTATGTGTATTTATAGAAAGCATTGCACAGTACAGTATG GATAATGCATTGCACAGTACAGTATGGATAATGTATACCATATATAGTCA GTTTATTATAGTATTGATAGTATTAATAGTATTAATCGTGCTACTGCTGT GTAGTGTAGTGTAGTGTAGTTTGTTTTTCCAACGGGGTTGGCCTTTCTTT TTTATACTAGTATATGTATGGTCATCACATATATAAAGTACTACTGTATA CCTGGTATATACTAGTATATGTATAGTCATAACGCATATATATATACTAT ACGTTTCACTTTGTAGGCTTTCCGCGGAGGATGATGAAACGTGAGGAGGC TTCCCCGCCCCCCCCACCTCCCCCCACTCATCAATCCTCGCCTCTGTCCA TGCGGTGTGTGTGTGTGTATGTGCAGCCCGTACACGGATCCCTCGCCCGT TTCGTGACCCACCCGTCCGACTTTTGCTTC
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Coding sequence (CDS) from alignment at H-elongata_contig117233:3..1532-

>mRNA_H-elongata_contig117233.1347.1 ID=mRNA_H-elongata_contig117233.1347.1|Name=mRNA_H-elongata_contig117233.1347.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig117233:3..1532- (Himanthalia elongata Himel1 dioecious)
ATGTGCACTACCTCAAGCACATGCGGTGCGCCGACTTTGTCGTGGAGAAG
CCCATGGTCATCGGCCACGAGGCGGCCGGCATCGTGGCGGAGATGTGCAC
TACCTCAAGCACATGCGGTGCGCCGACTTTGTCGTGGAGAAGCCCATGGT
CATCGGCCACGAGGCGGCCGGCATCGTGGCGGAGGTGGGATCTGCGGTGT
TGGGCCTGTCTCCCGGAGACCGAGTCGCCCTCGAGCCGGGCATTCCCTGT
CGGCTCTGTGGCCACTGCAAGTCCGGGAGCTACAATCTTTGCGAGACGAT
GGCGTTCCATGCTACCCCGGTGGGATCTGCGGTGTTGGGCCTGTCTCCCG
GAGACCGAGTCGCCCTCGAGCCGGGCATTCCCTGTCGGCTCTGTGGCCAC
TGCAAGTCCGGGAGCTACAATCTTTGCGAGACGATGGCGTTCCATGCTAC
CCCGCCCGTACACGGATCCCTCGCCCGTTTCGTGACCCGTACACGGATCC
CTCGCCCGTTTCGTGA
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