mRNA_H-elongata_contig117163.1344.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117163.1344.1
Unique NamemRNA_H-elongata_contig117163.1344.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A1Y1MJE9_PHOPY (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1MJE9_PHOPY)

HSP 1 Score: 94.7 bits (234), Expect = 2.540e-20
Identity = 52/113 (46.02%), Postives = 75/113 (66.37%), Query Frame = 1
Query:    4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQV-KEFMTLPIDVAIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTFE 339
            W +R Q   A +SSE+EYVALA  V+  LF   + +E + L I   I I+EDN+S I+MA +   +RRT+H+DIKH+ + D +E   +H++Y+ S EQ ADILTKS+ +  FE
Sbjct:  867 WKTRKQCTVALSSSEAEYVALATCVSNCLFFGHICQEILHLNI-FPIVINEDNQSCIRMA-STLETRRTKHIDIKHHYIRDCVESERIHIQYIPSNEQQADILTKSLSLSKFE 977          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5KJP2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJP2_9PHAE)

HSP 1 Score: 93.2 bits (230), Expect = 4.600e-20
Identity = 43/112 (38.39%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDVA-IKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 336
            WFSR QK    +++E EYVA+A+++  +LFLRQV   M L  D++ I + EDN+ AI++A N  ++  ++H+D++H+ + + +E   + + +V S  QHAD LTK++  ++F
Sbjct:  252 WFSRTQKCVTLSTTEVEYVAIADVLKEVLFLRQVWRLMLLDADMSCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 363          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5K684_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K684_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 4.070e-19
Identity = 42/112 (37.50%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 336
            WFSR QK    +++E+EYVA+A+++  +LFLRQV  FM     +  I + EDN+ AI++A N  ++  ++H+D++H+ + + +E   + + +V S  QHAD LTK+   ++F
Sbjct:  189 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKATSKESF 300          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5JHY5_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY5_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 5.800e-19
Identity = 42/112 (37.50%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 336
            WFSR QK    +++E+EYVA+A+++  +LFLRQV  FM     +  I + EDN+ AI++A N  ++  ++H+D++H+ + + +E   + + +V S  QHAD LTK++  ++F
Sbjct: 1350 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 1461          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5L3H4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H4_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 6.410e-19
Identity = 42/112 (37.50%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 336
            WFSR QK    +++E+EYVA A+++  +LFLRQV  FM     +  I + EDN+ AI++A N  ++  ++H+D++H+ + + +E   + + +V S  QHAD LTK++  ++F
Sbjct:  291 WFSRTQKCVTLSTTEAEYVAFADVLKEVLFLRQVWRFMLPDTGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 402          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5K6X8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6X8_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 6.780e-19
Identity = 44/108 (40.74%), Postives = 72/108 (66.67%), Query Frame = 1
Query:    1 SWFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSV 321
            SWFSR QK    +++E+EYVAL ++V  +LFLRQ+  FM   + +  I + EDN+ AI++A+N  S+  ++H+D++H+ + + +E   + V +V S  Q AD LTKS+
Sbjct:  188 SWFSRTQKYVTLSTTETEYVALGDVVKEILFLRQIWRFMLPQVGMPCIPVFEDNQGAIQLAQNPISNSNSKHIDVRHHFLRELVERKEISVIHVPSPYQRADFLTKSL 295          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5JTT9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTT9_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 7.930e-19
Identity = 40/112 (35.71%), Postives = 71/112 (63.39%), Query Frame = 1
Query:    4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 336
            WFSR QK    +++E+EYVA+A+++  +LFLRQV  FM     +  I + EDN   I++A N  ++  ++H+D++H+ + + +E   + + +V S  QH D LTK++  ++F
Sbjct:   47 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNNQRIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHVDSLTKAISKESF 158          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5KQN5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQN5_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 1.050e-18
Identity = 43/112 (38.39%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 336
            WFSR QK     ++ESEYVA+A+++  +LFLRQV  FM     +  I + EDN+ AI++A N  ++  ++H+D++H+ + + +E   + + +V S  QHAD LTK++  ++F
Sbjct:  706 WFSRTQKCVTLYTTESEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAYNPITNSNSKHIDVRHHFIRELVERKEISITHVTSEFQHADFLTKAISKESF 817          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5K8K2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8K2_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 1.380e-18
Identity = 42/112 (37.50%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 336
            WFSR QK    +++E+EYVA+A+++  +LFLRQV  FM     +  I + EDN+ AI++A N  ++  ++H+D +H+++   +E   + + +V S  QHAD LTK++  ++F
Sbjct:  171 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQVAHNPITNSNSKHIDERHHLIRKLVERKEISITHVTSEFQHADFLTKAISKESF 282          
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 2.110e-18
Identity = 41/112 (36.61%), Postives = 73/112 (65.18%), Query Frame = 1
Query:    4 WFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDV-AIKIHEDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHADILTKSVDVKTF 336
            WFSR QK    +++E+EYVA+A+++  +LFLRQV  FM     +  I + EDN+ AI++A N  ++  ++H+D++H+ + + +E   + +  V +  QHAD LTK++  ++F
Sbjct:  199 WFSRTQKCVTLSTTEAEYVAIADVLKEVLFLRQVWRFMLPDAGMPCIPVFEDNQGAIQIAHNPITNSNSKHIDVRHHFIRELVERKEISITNVPTPFQHADFLTKAISKESF 310          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117163.1344.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A1Y1MJE9_PHOPY2.540e-2046.02Integrase catalytic domain-containing protein (Fra... [more]
A0A6H5KJP2_9PHAE4.600e-2038.39Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5K684_9PHAE4.070e-1937.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHY5_9PHAE5.800e-1937.50Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5L3H4_9PHAE6.410e-1937.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6X8_9PHAE6.780e-1940.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTT9_9PHAE7.930e-1935.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQN5_9PHAE1.050e-1838.39Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5K8K2_9PHAE1.380e-1837.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KP70_9PHAE2.110e-1836.61Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117163contigH-elongata_contig117163:1719..2057 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue3.9e-14
Seed eggNOG ortholog67593.Physo133508
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QHHC@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929682.005139-CDS-H-elongata_contig117163:1718..20571622929682.005139-CDS-H-elongata_contig117163:1718..2057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117163 1719..2057 -
1691679117.7522063-CDS-H-elongata_contig117163:1718..20571691679117.7522063-CDS-H-elongata_contig117163:1718..2057Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117163 1719..2057 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117163.1344.1prot_H-elongata_contig117163.1344.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117163 1719..2057 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117163.1344.1

>prot_H-elongata_contig117163.1344.1 ID=prot_H-elongata_contig117163.1344.1|Name=mRNA_H-elongata_contig117163.1344.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=113bp
SWFSRVQKVTAAASSESEYVALAEMVNGLLFLRQVKEFMTLPIDVAIKIH
EDNESAIKMARNRFSSRRTRHVDIKHYIVHDAIEGGVVHVEYVRSGEQHA
DILTKSVDVKTFE
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mRNA from alignment at H-elongata_contig117163:1719..2057-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117163.1344.1 ID=mRNA_H-elongata_contig117163.1344.1|Name=mRNA_H-elongata_contig117163.1344.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=339bp|location=Sequence derived from alignment at H-elongata_contig117163:1719..2057- (Himanthalia elongata Himel1 dioecious)
AGTTGGTTCTCACGAGTGCAAAAGGTAACGGCGGCGGCGTCGTCCGAATC GGAATACGTCGCGCTGGCTGAGATGGTAAACGGGTTACTTTTCCTACGGC AGGTCAAGGAGTTCATGACCCTCCCAATCGACGTCGCCATCAAGATACAC GAGGACAACGAAAGCGCAATCAAGATGGCGAGAAACCGCTTCAGTAGTCG ACGAACGAGGCACGTGGACATCAAACATTACATTGTCCACGACGCGATCG AGGGGGGGGTGGTTCACGTAGAATACGTTCGGTCCGGAGAACAGCACGCC GACATCCTCACGAAGTCTGTAGACGTCAAGACATTCGAG
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Coding sequence (CDS) from alignment at H-elongata_contig117163:1719..2057-

>mRNA_H-elongata_contig117163.1344.1 ID=mRNA_H-elongata_contig117163.1344.1|Name=mRNA_H-elongata_contig117163.1344.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=678bp|location=Sequence derived from alignment at H-elongata_contig117163:1719..2057- (Himanthalia elongata Himel1 dioecious)
AGTTGGTTCTCACGAGTGCAAAAGGTAACGGCGGCGGCGTCGTCCGAATC
GGAATACGTCGCGCTGGCTGAGATGGTAAACGGGTTACTTTTCCTACGGC
AGGTCAAGGAGTTCATGACCCTCCCAATCGACGTCGCCATCAAGATACAC
GAGGACAACGAAAGCGCAATCAAGATGGCGAGAAACCGCTTCAGTAGTCG
ACGAACGAGGCACGTGGACATCAAACATTACATTGTCCACGACGCGATCG
AGGGGGGGGTGGTTCACGTAGAATACGTTCGGTCCGGAGAACAGCACGCC
GACATCCTCACGAAGTCTGTAGACGTCAAGACATTCGAGAGTTGGTTCTC
ACGAGTGCAAAAGGTAACGGCGGCGGCGTCGTCCGAATCGGAATACGTCG
CGCTGGCTGAGATGGTAAACGGGTTACTTTTCCTACGGCAGGTCAAGGAG
TTCATGACCCTCCCAATCGACGTCGCCATCAAGATACACGAGGACAACGA
AAGCGCAATCAAGATGGCGAGAAACCGCTTCAGTAGTCGACGAACGAGGC
ACGTGGACATCAAACATTACATTGTCCACGACGCGATCGAGGGGGGGGTG
GTTCACGTAGAATACGTTCGGTCCGGAGAACAGCACGCCGACATCCTCAC
GAAGTCTGTAGACGTCAAGACATTCGAG
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