mRNA_H-elongata_contig117136.1339.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117136.1339.1
Unique NamemRNA_H-elongata_contig117136.1339.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117136.1339.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117136contigH-elongata_contig117136:914..1189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size276
Cds size126
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929681.512175-CDS-H-elongata_contig117136:913..10391622929681.512175-CDS-H-elongata_contig117136:913..1039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117136 914..1039 +
1691679117.579012-CDS-H-elongata_contig117136:913..10391691679117.579012-CDS-H-elongata_contig117136:913..1039Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117136 914..1039 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929681.5265434-UTR-H-elongata_contig117136:1039..11891622929681.5265434-UTR-H-elongata_contig117136:1039..1189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117136 1040..1189 +
1691679117.5887275-UTR-H-elongata_contig117136:1039..11891691679117.5887275-UTR-H-elongata_contig117136:1039..1189Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig117136 1040..1189 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117136.1339.1prot_H-elongata_contig117136.1339.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117136 914..1039 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117136.1339.1

>prot_H-elongata_contig117136.1339.1 ID=prot_H-elongata_contig117136.1339.1|Name=mRNA_H-elongata_contig117136.1339.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=42bp
PRSTYKSCEFCARRKRRCDGDGVNRCRLVLLCCSERLASSR*
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mRNA from alignment at H-elongata_contig117136:914..1189+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117136.1339.1 ID=mRNA_H-elongata_contig117136.1339.1|Name=mRNA_H-elongata_contig117136.1339.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=276bp|location=Sequence derived from alignment at H-elongata_contig117136:914..1189+ (Himanthalia elongata Himel1 dioecious)
CCGCGTAGTACTTACAAAAGCTGTGAATTTTGCGCGAGGCGGAAGCGTCG
CTGCGACGGGGATGGCGTGAATCGATGCAGGTTGGTTTTGTTATGCTGTA
GCGAACGATTAGCGTCGAGCCGTTGAGAAGAGTTTTGGTTTGGATTAAGC
TGTTGGTCCAGGCAACTACAGTACAATCTAACCATTTGTGGATCCAGACA
GTGTACTGCATGAACTTCACAGAGAAGTAATGGCATTTGAAATGTCTTGA
ATTCCCACAGTTCGCTTCTGGCCCTT
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Coding sequence (CDS) from alignment at H-elongata_contig117136:914..1189+

>mRNA_H-elongata_contig117136.1339.1 ID=mRNA_H-elongata_contig117136.1339.1|Name=mRNA_H-elongata_contig117136.1339.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=252bp|location=Sequence derived from alignment at H-elongata_contig117136:914..1189+ (Himanthalia elongata Himel1 dioecious)
CCGCGTAGTACTTACAAAAGCTGTGAATTTTGCGCGAGGCGGAAGCGTCG
CTGCGACGGGGATGGCGTGAATCGATGCAGGTTGGTTTTGTTATGCTGTA
GCGAACGATTAGCGTCGAGCCGTTGACCGCGTAGTACTTACAAAAGCTGT
GAATTTTGCGCGAGGCGGAAGCGTCGCTGCGACGGGGATGGCGTGAATCG
ATGCAGGTTGGTTTTGTTATGCTGTAGCGAACGATTAGCGTCGAGCCGTT
GA
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