mRNA_H-elongata_contig117103.1336.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117103.1336.1
Unique NamemRNA_H-elongata_contig117103.1336.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig117103.1336.1 vs. uniprot
Match: D8LEB4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEB4_ECTSI)

HSP 1 Score: 270 bits (691), Expect = 1.970e-83
Identity = 157/271 (57.93%), Postives = 180/271 (66.42%), Query Frame = 1 
Query:    1 GHTFPSSSRGGPAVSAASLSSEGMSFNSSG-GDVFAVGFSGGSIAVLDGRCSEGHGMVGGFVAAHRWLERVRCAGPLLMASYGRTKYIETWDVRMLPTR----PPPSRDIVQLLQPPFYAPPAPPRLASLACACSSPDFWVEPHGLTVAVYGAPRNSQRFGAKHAFWSWPK-IGDSTTRSWRRQASGGVCSPTAVTAAATHHGKTLAVPGVVSDSDYRLCLSTGIKFVDTHMATVLDPSRVLVDEVMVNGSGGASKDKKRALSVGSVLLAA 795
            G TFP+  RGG AVS A LSSEGM F SSG G++FAVGF+GG++AV D RC EG GMVGGF   HRWL+R+R AGPLLM SYGRTK IETWD+R LP+R    PPP     +L         APP LA LAC  +SPDFWVEPHGL VAV+GAPR+SQRFGAKHAFW WP+  G   T S    A    CS           G+ + VPGVV+DS YR+CLSTG+KF DTHMATVLD SRVLVDE+ V          +    V S+ LAA
Sbjct:  352 GLTFPTMERGGAAVSMAPLSSEGMPFGSSGSGELFAVGFAGGTVAVFDARCHEGGGMVGGFTTRHRWLKRLRSAGPLLMNSYGRTKNIETWDMRRLPSRATHEPPPGLPSPRLR--------APPCLADLACPANSPDFWVEPHGLCVAVHGAPRHSQRFGAKHAFWPWPRQTGGVATVSTDPNAP--ACSARGDGGGVEIPGRCVVVPGVVNDSGYRMCLSTGVKFTDTHMATVLDSSRVLVDEMAVMPRVSRGSGDREGAGVTSLFLAA 612
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117103.1336.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEB4_ECTSI1.970e-8357.93Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117103contigH-elongata_contig117103:366..1444 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionF-box domain
Ec32 orthologEc-00_001610.1
Exons3
Model size798
Cds size798
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117103.1336.1prot_H-elongata_contig117103.1336.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117103 366..1444 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929681.2766013-CDS-H-elongata_contig117103:365..6131622929681.2766013-CDS-H-elongata_contig117103:365..613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117103 366..613 +
1691679117.4803326-CDS-H-elongata_contig117103:365..6131691679117.4803326-CDS-H-elongata_contig117103:365..613Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117103 366..613 +
1622929681.291262-CDS-H-elongata_contig117103:786..11351622929681.291262-CDS-H-elongata_contig117103:786..1135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117103 787..1135 +
1691679117.4894152-CDS-H-elongata_contig117103:786..11351691679117.4894152-CDS-H-elongata_contig117103:786..1135Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117103 787..1135 +
1622929681.3099597-CDS-H-elongata_contig117103:1243..14441622929681.3099597-CDS-H-elongata_contig117103:1243..1444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117103 1244..1444 +
1691679117.5015185-CDS-H-elongata_contig117103:1243..14441691679117.5015185-CDS-H-elongata_contig117103:1243..1444Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117103 1244..1444 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117103.1336.1

>prot_H-elongata_contig117103.1336.1 ID=prot_H-elongata_contig117103.1336.1|Name=mRNA_H-elongata_contig117103.1336.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=266bp
GHTFPSSSRGGPAVSAASLSSEGMSFNSSGGDVFAVGFSGGSIAVLDGRC
SEGHGMVGGFVAAHRWLERVRCAGPLLMASYGRTKYIETWDVRMLPTRPP
PSRDIVQLLQPPFYAPPAPPRLASLACACSSPDFWVEPHGLTVAVYGAPR
NSQRFGAKHAFWSWPKIGDSTTRSWRRQASGGVCSPTAVTAAATHHGKTL
AVPGVVSDSDYRLCLSTGIKFVDTHMATVLDPSRVLVDEVMVNGSGGASK
DKKRALSVGSVLLAA*
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mRNA from alignment at H-elongata_contig117103:366..1444+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117103.1336.1 ID=mRNA_H-elongata_contig117103.1336.1|Name=mRNA_H-elongata_contig117103.1336.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1079bp|location=Sequence derived from alignment at H-elongata_contig117103:366..1444+ (Himanthalia elongata Himel1 dioecious)
GGACATACATTCCCGTCATCATCGCGCGGTGGGCCGGCTGTAAGCGCCGC
CTCTCTGAGCTCGGAGGGTATGTCGTTCAATTCCAGCGGGGGGGATGTAT
TCGCCGTCGGCTTCAGCGGAGGCTCAATCGCCGTTCTCGACGGTCGCTGC
AGCGAGGGCCACGGGATGGTTGGCGGATTTGTGGCAGCTCACAGGTGGCT
GGAGAGGGTGCGGTGCGCGGGCCCGTTGCTGATGGCTTCCTACGGAAGGT
AAGCGAAGGCCGCGAGTGCGACTGCGCGCTGGAGAGAGGATGTGGGGTAA
ATACATATTTATGGGGGGGATAGGGCGCCATATTCACGCTCCCCGACCCA
CCCCCTGTTTTGCCTTACCCTGATCATTCCTCCAAACCCCACCCCTGCCG
ATGTACCTCCCCTGCCCCCAGAACAAAGTACATCGAGACGTGGGACGTCC
GCATGCTTCCTACACGGCCACCGCCGTCTCGCGACATCGTGCAGCTGCTG
CAGCCGCCCTTCTACGCGCCCCCGGCGCCGCCCCGGCTCGCCAGCCTTGC
ATGCGCCTGTAGCTCGCCCGACTTTTGGGTCGAGCCTCACGGGCTCACGG
TAGCGGTGTACGGGGCGCCTCGCAATAGCCAACGCTTCGGGGCCAAGCAC
GCCTTCTGGTCGTGGCCAAAGATCGGCGACTCGACCACCCGGAGTTGGCG
GCGGCAAGCCAGTGGCGGCGTTTGCAGCCCGACGGCGGTAACCGCTGCAG
CGACCCACCACGGCAAAACCGTCGACATCCACGGTGAAAACGCGGCACGT
GTTTTAATAGGTTCGCGGGGTGTTAGTCCACCCGCCGCCCGAGTGGTAGA
AGCGAGGATTGCCAGGGGAAGGGTGGAGCTCGCGGTCCCCGGCGTTGTAA
GCGATTCTGACTACCGCCTCTGCCTGTCTACCGGGATAAAGTTCGTCGAC
ACGCACATGGCCACCGTGTTGGACCCGTCTCGCGTGCTGGTGGACGAAGT
TATGGTCAACGGTAGCGGCGGCGCAAGTAAAGACAAAAAAAGGGCGCTTT
CCGTAGGATCGGTGCTGCTTGCAGCATGA
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Coding sequence (CDS) from alignment at H-elongata_contig117103:366..1444+

>mRNA_H-elongata_contig117103.1336.1 ID=mRNA_H-elongata_contig117103.1336.1|Name=mRNA_H-elongata_contig117103.1336.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1596bp|location=Sequence derived from alignment at H-elongata_contig117103:366..1444+ (Himanthalia elongata Himel1 dioecious)
GGACATACATTCCCGTCATCATCGCGCGGTGGGCCGGCTGTAAGCGCCGC
CTCTCTGAGCTCGGAGGGTATGTCGTTCAATTCCAGCGGGGGGGATGTAT
TCGCCGTCGGCTTCAGCGGAGGCTCAATCGCCGTTCTCGACGGTCGCTGC
AGCGAGGGCCACGGGATGGTTGGCGGATTTGTGGCAGCTCACAGGTGGCT
GGAGAGGGTGCGGTGCGCGGGCCCGTTGCTGATGGCTTCCTACGGAAGGG
ACATACATTCCCGTCATCATCGCGCGGTGGGCCGGCTGTAAGCGCCGCCT
CTCTGAGCTCGGAGGGTATGTCGTTCAATTCCAGCGGGGGGGATGTATTC
GCCGTCGGCTTCAGCGGAGGCTCAATCGCCGTTCTCGACGGTCGCTGCAG
CGAGGGCCACGGGATGGTTGGCGGATTTGTGGCAGCTCACAGGTGGCTGG
AGAGGGTGCGGTGCGCGGGCCCGTTGCTGATGGCTTCCTACGGAAGAACA
AAGTACATCGAGACGTGGGACGTCCGCATGCTTCCTACACGGCCACCGCC
GTCTCGCGACATCGTGCAGCTGCTGCAGCCGCCCTTCTACGCGCCCCCGG
CGCCGCCCCGGCTCGCCAGCCTTGCATGCGCCTGTAGCTCGCCCGACTTT
TGGGTCGAGCCTCACGGGCTCACGGTAGCGGTGTACGGGGCGCCTCGCAA
TAGCCAACGCTTCGGGGCCAAGCACGCCTTCTGGTCGTGGCCAAAGATCG
GCGACTCGACCACCCGGAGTTGGCGGCGGCAAGCCAGTGGCGGCGTTTGC
AGCCCGACGGCGGTAACCGCTGCAGCGACCCACCACGGCAAAACCAACAA
AGTACATCGAGACGTGGGACGTCCGCATGCTTCCTACACGGCCACCGCCG
TCTCGCGACATCGTGCAGCTGCTGCAGCCGCCCTTCTACGCGCCCCCGGC
GCCGCCCCGGCTCGCCAGCCTTGCATGCGCCTGTAGCTCGCCCGACTTTT
GGGTCGAGCCTCACGGGCTCACGGTAGCGGTGTACGGGGCGCCTCGCAAT
AGCCAACGCTTCGGGGCCAAGCACGCCTTCTGGTCGTGGCCAAAGATCGG
CGACTCGACCACCCGGAGTTGGCGGCGGCAAGCCAGTGGCGGCGTTTGCA
GCCCGACGGCGGTAACCGCTGCAGCGACCCACCACGGCAAAACCCTCGCG
GTCCCCGGCGTTGTAAGCGATTCTGACTACCGCCTCTGCCTGTCTACCGG
GATAAAGTTCGTCGACACGCACATGGCCACCGTGTTGGACCCGTCTCGCG
TGCTGGTGGACGAAGTTATGGTCAACGGTAGCGGCGGCGCAAGTAAAGAC
AAAAAAAGGGCGCTTTCCGTAGGATCGGTGCTGCTTGCAGCATGACTCGC
GGTCCCCGGCGTTGTAAGCGATTCTGACTACCGCCTCTGCCTGTCTACCG
GGATAAAGTTCGTCGACACGCACATGGCCACCGTGTTGGACCCGTCTCGC
GTGCTGGTGGACGAAGTTATGGTCAACGGTAGCGGCGGCGCAAGTAAAGA
CAAAAAAAGGGCGCTTTCCGTAGGATCGGTGCTGCTTGCAGCATGA
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