mRNA_H-elongata_contig11709.1334.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11709.1334.1 vs. uniprot
Match: A0A6H5K5J8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5J8_9PHAE) HSP 1 Score: 174 bits (440), Expect = 3.100e-47 Identity = 100/170 (58.82%), Postives = 119/170 (70.00%), Query Frame = 1
Query: 1 MADVRTDAAILLSPTGYLEGIVTDNDIARRGDQAVANGRKASTTPVSEVMTPNPTVVRMNDKALDCLGIMVERHFRHLPVIDIEGNVAGLLSIAKCLWDAIHRLEKKAKRAQENPGGSGGD-------VNLAASMLQVASSRRGAGRGKAKDLRAALEMLLANTGDGEES 489
MADVRTDAAILL G+LEGI++D D+ARR VAN S+T VSEVMTP+PT+V M D A++CLGIM+E+ FRHLPVID EGNV GLLSIAKCL+DAI RL+KKA RA EN G +LAAS+LQ+A +DL+AAL MLLANT D E+
Sbjct: 10 MADVRTDAAILLDNKGHLEGIISDQDVARR---VVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARA-ENSGXXXXXXXXXXXXADLAASVLQMAXXXXXXXXXXXRDLQAALAMLLANTSDEAEA 175
BLAST of mRNA_H-elongata_contig11709.1334.1 vs. uniprot
Match: D7FJ79_ECTSI (CBS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ79_ECTSI) HSP 1 Score: 156 bits (395), Expect = 1.820e-45 Identity = 92/165 (55.76%), Postives = 108/165 (65.45%), Query Frame = 1
Query: 1 MADVRTDAAILLSPTGYLEGIVTDNDIARRGDQAVANGRKASTTPVSEVMTPNPTVVRMNDKALDCLGIMVERHFRHLPVIDIEGNVAGLLSIAKCLWDAIHRLEKKAKRAQENPGGSGGDVNLAASMLQVASSRRGAGRGKAK--DLRAALEMLLANTGDGEES 489
MADVRTDAAILL G+LEGI++D D+ARR VAN S+T VSEVMTP+PT+V M D A++CLGIM+E+ FRHLPVID EGNV GLLSIAKCL+DAI RL+KKA RA EN G DL+AAL MLLAN+ D E+
Sbjct: 1 MADVRTDAAILLDNKGHLEGIISDQDVARR---VVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARA-ENSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLQAALAMLLANSSDEAEA 161
BLAST of mRNA_H-elongata_contig11709.1334.1 vs. uniprot
Match: D7G6N9_ECTSI (Myosin 29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6N9_ECTSI) HSP 1 Score: 156 bits (395), Expect = 3.680e-41 Identity = 92/165 (55.76%), Postives = 108/165 (65.45%), Query Frame = 1
Query: 1 MADVRTDAAILLSPTGYLEGIVTDNDIARRGDQAVANGRKASTTPVSEVMTPNPTVVRMNDKALDCLGIMVERHFRHLPVIDIEGNVAGLLSIAKCLWDAIHRLEKKAKRAQENPGGSGGDVNLAASMLQVASSRRGAGRGKAK--DLRAALEMLLANTGDGEES 489
MADVRTDAAILL G+LEGI++D D+ARR VAN S+T VSEVMTP+PT+V M D A++CLGIM+E+ FRHLPVID EGNV GLLSIAKCL+DAI RL+KKA RA EN G DL+AAL MLLAN+ D E+
Sbjct: 1901 MADVRTDAAILLDNKGHLEGIISDQDVARR---VVANRLDPSSTTVSEVMTPHPTIVHMADSAMECLGIMIEKRFRHLPVIDGEGNVTGLLSIAKCLYDAIQRLKKKAARA-ENSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLQAALAMLLANSSDEAEA 2061
BLAST of mRNA_H-elongata_contig11709.1334.1 vs. uniprot
Match: A0A7S2PMW1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PMW1_9STRA) HSP 1 Score: 126 bits (317), Expect = 5.830e-32 Identity = 76/162 (46.91%), Postives = 96/162 (59.26%), Query Frame = 1
Query: 1 MADVRTDAAILLSPTGYLEGIVTDNDIARRGDQAVANGRKASTTPVSEVMTPNPTVVRMNDKALDCLGIMVERHFRHLPVIDIEGNVAGLLSIAKCLWDAIHRLEKKAKRAQENPGGSGGDVNLAASMLQVASSRRGAGRGKAKDLRAALEMLLA----NTG 474
+A R DAA++ S G L GI+TD D+ RR VA + +T +S VMT NPT V M+D A+D LG MVE HFRHLPV+D G V GLL IAKCL DAI +LEK + D N AA ++ +S +GAG +A L+A L L+A NTG
Sbjct: 49 LASKRGDAALITSANGGLAGIITDTDVTRR---VVAKYIEPESTSISSVMTANPTCVAMSDSAMDALGTMVENHFRHLPVVDDNGGVVGLLDIAKCLNDAISKLEKSESKK---------DGNAAADAVKQMASLQGAGGAQAAALQALLGPLMAQAFGNTG 198
BLAST of mRNA_H-elongata_contig11709.1334.1 vs. uniprot
Match: A0A7R9VL18_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VL18_9STRA) HSP 1 Score: 119 bits (298), Expect = 3.180e-29 Identity = 76/155 (49.03%), Postives = 91/155 (58.71%), Query Frame = 1
Query: 1 MADVRTDAAILLSPTGYLEGIVTDNDIARRGDQAVANGRKASTTPVSEVMTPNPTVVRMNDKALDCLGIMVERHFRHLPVIDIEGNVAGLLSIAKCLWDAIHRLEKKAKRAQENPGGSGGDVNLAASMLQVASSRRGAGRGKAKDLRAALEMLLA 465
+A+ R DAA+L+ P G L GIVTD DI RR VA S+T VS VMT +PT V M D A+D L MVE HFRHLPV+D G V GLL IAKCL DAI +LE RAQE G + D + LQ GAG +A L+ L L++
Sbjct: 55 LANKRGDAALLVGPDGGLAGIVTDTDITRR---VVAKHVDPSSTSVSAVMTASPTCVSMTDSAMDALATMVENHFRHLPVVDDNGAVVGLLDIAKCLNDAISKLE----RAQEKSGSAAEDAVKQMANLQ------GAGGAQAAMLQQLLGPLMS 196
BLAST of mRNA_H-elongata_contig11709.1334.1 vs. uniprot
Match: B7G2M6_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G2M6_PHATC) HSP 1 Score: 119 bits (297), Expect = 1.230e-28 Identity = 69/162 (42.59%), Postives = 98/162 (60.49%), Query Frame = 1
Query: 1 MADVRTDAAILLSPTGYLEGIVTDNDIARRGDQAVANGRKASTTPVSEVMTPNPTVVRMNDKALDCLGIMVERHFRHLPVIDIEGNVAGLLSIAKCLWDAIHRLEKKAKRAQENPGGSGGDVNLAASMLQVASSRRGAGRGKAKDLRAALEMLLANTGDGEE 486
++ R A++++S G L GI+TD DI RR VA S T VSEVMTPNPT V M+D A+D L MVE HFRHLPV+D +G+V GLL IAKCL DAI +LE+ +++ + A ++ +++GAG +A L+A L L++ G++
Sbjct: 31 LSSKRGAASLVVSTDGSLAGIMTDTDITRR---VVAKHIDTSATSVSEVMTPNPTCVAMSDSAMDALTTMVENHFRHLPVVDDQGSVVGLLDIAKCLNDAISKLERTSEKTN----------SAAEDAVKQMVAQQGAGGAQAAALKALLGNLMSQAFGGKQ 179
BLAST of mRNA_H-elongata_contig11709.1334.1 vs. uniprot
Match: A0A7R9VME7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VME7_9STRA) HSP 1 Score: 119 bits (298), Expect = 3.470e-28 Identity = 76/155 (49.03%), Postives = 91/155 (58.71%), Query Frame = 1
Query: 1 MADVRTDAAILLSPTGYLEGIVTDNDIARRGDQAVANGRKASTTPVSEVMTPNPTVVRMNDKALDCLGIMVERHFRHLPVIDIEGNVAGLLSIAKCLWDAIHRLEKKAKRAQENPGGSGGDVNLAASMLQVASSRRGAGRGKAKDLRAALEMLLA 465
+A+ R DAA+L+ P G L GIVTD DI RR VA S+T VS VMT +PT V M D A+D L MVE HFRHLPV+D G V GLL IAKCL DAI +LE RAQE G + D + LQ GAG +A L+ L L++
Sbjct: 42 LANKRGDAALLVGPDGGLAGIVTDTDITRR---VVAKHVDPSSTSVSAVMTASPTCVSMTDSAMDALATMVENHFRHLPVVDDNGAVVGLLDIAKCLNDAISKLE----RAQEKSGSAAEDAVKQMANLQ------GAGGAQAAMLQQLLGPLMS 183
BLAST of mRNA_H-elongata_contig11709.1334.1 vs. uniprot
Match: C6JVY2_PHATR (Myosin 29 n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=C6JVY2_PHATR) HSP 1 Score: 119 bits (297), Expect = 5.510e-28 Identity = 69/162 (42.59%), Postives = 98/162 (60.49%), Query Frame = 1
Query: 1 MADVRTDAAILLSPTGYLEGIVTDNDIARRGDQAVANGRKASTTPVSEVMTPNPTVVRMNDKALDCLGIMVERHFRHLPVIDIEGNVAGLLSIAKCLWDAIHRLEKKAKRAQENPGGSGGDVNLAASMLQVASSRRGAGRGKAKDLRAALEMLLANTGDGEE 486
++ R A++++S G L GI+TD DI RR VA S T VSEVMTPNPT V M+D A+D L MVE HFRHLPV+D +G+V GLL IAKCL DAI +LE+ +++ + A ++ +++GAG +A L+A L L++ G++
Sbjct: 1818 LSSKRGAASLVVSTDGSLAGIMTDTDITRR---VVAKHIDTSATSVSEVMTPNPTCVAMSDSAMDALTTMVENHFRHLPVVDDQGSVVGLLDIAKCLNDAISKLERTSEKTN----------SAAEDAVKQMVAQQGAGGAQAAALKALLGNLMSQAFGGKQ 1966
BLAST of mRNA_H-elongata_contig11709.1334.1 vs. uniprot
Match: A0A7S3M8U3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3M8U3_9STRA) HSP 1 Score: 116 bits (290), Expect = 7.840e-28 Identity = 72/162 (44.44%), Postives = 90/162 (55.56%), Query Frame = 1
Query: 1 MADVRTDAAILLSPTGYLEGIVTDNDIARRGDQAVANGRKASTTPVSEVMTPNPTVVRMNDKALDCLGIMVERHFRHLPVIDIEGNVAGLLSIAKCLWDAIHRLEKKAKRAQENPGGSG-GDVNLAASMLQVASSRRGAGRGKAKDLRAALEMLLANTGDGE 483
MA R DAA+LL G L GI+TDND+ RR +A +S T VS VMT NP V+ D ALD L +MV+ FRHLPV+D +G V GLL IAKCL+DAI LEK +E G G N A + A + GRG K A++ ++ GE
Sbjct: 58 MALNRVDAALLLDAEGALSGIITDNDVTRR---VIAVSLVSSDTLVSAVMTKNPKCVQSADSALDALEMMVDNRFRHLPVMDEQGVVVGLLDIAKCLYDAISVLEKVQGGGEEGSEKDGAGTGNAMAKAMTEAMKKAAGGRGTNKQQLLAIQAMMETMFGGE 216
BLAST of mRNA_H-elongata_contig11709.1334.1 vs. uniprot
Match: A0A1E7EUQ0_9STRA (CBS-domain-containing protein (Fragment) n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EUQ0_9STRA) HSP 1 Score: 115 bits (289), Expect = 1.670e-27 Identity = 59/109 (54.13%), Postives = 76/109 (69.72%), Query Frame = 1
Query: 1 MADVRTDAAILLSPTGYLEGIVTDNDIARRGDQAVANGRKASTTPVSEVMTPNPTVVRMNDKALDCLGIMVERHFRHLPVIDIEGNVAGLLSIAKCLWDAIHRLEKKAK 327
+A R A+++++ G L GI+TD DI RR +A A++T VS+VMTPNPT V M D A+D + MVE HFRHLPV+D +G V GLL IAKCL DAI +LEKK+K
Sbjct: 29 LASKRGSASLIVNDEGGLAGIITDTDITRR---LIAKHLDAASTSVSKVMTPNPTCVSMLDSAMDAMTTMVENHFRHLPVVDDKGGVVGLLDIAKCLNDAISKLEKKSK 134 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11709.1334.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11709.1334.1 >prot_H-elongata_contig11709.1334.1 ID=prot_H-elongata_contig11709.1334.1|Name=mRNA_H-elongata_contig11709.1334.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=163bp MADVRTDAAILLSPTGYLEGIVTDNDIARRGDQAVANGRKASTTPVSEVMback to top mRNA from alignment at H-elongata_contig11709:172..1719- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11709.1334.1 ID=mRNA_H-elongata_contig11709.1334.1|Name=mRNA_H-elongata_contig11709.1334.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1548bp|location=Sequence derived from alignment at H-elongata_contig11709:172..1719- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11709:172..1719- >mRNA_H-elongata_contig11709.1334.1 ID=mRNA_H-elongata_contig11709.1334.1|Name=mRNA_H-elongata_contig11709.1334.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=978bp|location=Sequence derived from alignment at H-elongata_contig11709:172..1719- (Himanthalia elongata Himel1 dioecious)back to top |