mRNA_H-elongata_contig117072.1332.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig117072.1332.1 vs. uniprot
Match: A0A6H5LM87_9PHAE (CYTH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LM87_9PHAE) HSP 1 Score: 286 bits (731), Expect = 3.010e-91 Identity = 141/232 (60.78%), Postives = 172/232 (74.14%), Query Frame = 1
Query: 1 FVLARYAELYPDEVDRIFMICPSFCLGARAPKLLGEPEMIEWERIGARVFPLSTGGEASVRWSFIEEAKVQPDYPEYTCPAMILHGVNDEIVPSAFSRCLVEGSLDLAKRTSVIFVDDDHALTQPTTLSLTSKALIDFFEL-------GPEVKRLKSDERGE-ERDGIQKNVEVEAKFSVDDVSKVKQSVLASGGQLVGDHVFWDAYWDAPSCSLVEKDWWLRNRAGRWELK 672
FV+ARYAELYP+EVDRIFM+CPSF LG RA K E EM EWER GARVF LSTGGEASV W+F++EA++QPDYP Y CPA I+HG+ DE+VP A ++ LVEG DLA+ + FV+DDHALT+P+T++LT++AL DFFEL G E D G ++ Q+++EVEAKFS DV KVK++VLA GG VG+ VF D YWDA C L E DWWLR+RAGRWELK
Sbjct: 123 FVVARYAELYPEEVDRIFMLCPSFGLGTRAGKFASEAEMAEWERTGARVFSLSTGGEASVPWTFVQEARLQPDYPAYACPAAIVHGLQDEVVPVAVTKSLVEGRGDLAECSFATFVEDDHALTKPSTMALTAEALADFFELDRREVAEGTEGAAAVDDTNGRRDQSPPQRSIEVEAKFSAHDVDKVKETVLARGGHFVGEQVFTDVYWDAKGCGLTEIDWWLRSRAGRWELK 354
BLAST of mRNA_H-elongata_contig117072.1332.1 vs. uniprot
Match: A0A4D9CST7_9STRA (CYTH domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CST7_9STRA) HSP 1 Score: 162 bits (410), Expect = 1.650e-43 Identity = 91/232 (39.22%), Postives = 134/232 (57.76%), Query Frame = 1
Query: 1 FVLARYAELYPDEVDRIFMICPSFCLGARAPKLLGEPEMIEWERIGARVFPLSTGGEASVRWSFIEEAKVQPDYPEYTCPAMILHGVNDEIVP--SAFSRCLVEGSLDLAKRTSVIFVDDDHALTQPTTLSLTSKALIDFFELGPEVKRLKSDERGEERDG-----IQKNVEVEAKFSV-DDVSKVKQSVLASGGQLVGDHVFWDAYWDAPSCSLVEKDWWLRNRAGRWELK 672
+V AR+AELYP+ V+++ + CP F L AR P+ LG M W + G R F + G V WSFIE+ P +P YT PA+I+HG+ DE+VP + L + L + T V+ VDDDH LTQP TL++ S A++DF ++ + GEE +G ++EVEAK ++ +D +++S+LA+GG+L + D YWD + + WLR R+G WELK
Sbjct: 126 YVAARFAELYPEAVEKLVLFCPGFDLQARWPRRLGGAAMRAWMKEGHRDFE-ARQGVVRVPWSFIEDGCQHPPFPSYTAPALIIHGLRDEVVPVETTTVSLLEQAGGQLKEWTQVVLVDDDHGLTQPATLAVASGAILDFLQIPAPAGDPDENGAGEEGEGQGAVSAADHIEVEAKLALPEDRRALEESILAAGGELKCTVIMTDIYWDLGGEAFSLSNVWLRQRSGVWELK 356
BLAST of mRNA_H-elongata_contig117072.1332.1 vs. uniprot
Match: A0A0G4EN47_VITBC (CYTH domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EN47_VITBC) HSP 1 Score: 157 bits (398), Expect = 1.410e-41 Identity = 90/238 (37.82%), Postives = 128/238 (53.78%), Query Frame = 1
Query: 1 FVLARYAELYPDEVDRIFMICPSFCLGARAPKLLGE------PEMIEWERIGARVFPLSTGGEASVRWSFIEEAKVQPDYPEYTCPAMILHGVNDEIVPSAFSRCLVEGSLDLAKRTSVIFVDDDHALTQPTTLSLTSKALIDFFELGPEVKRLKSDERGEERDGIQKN--------VEVEAKFSVDDVSKVKQSVLASGGQLVGDHVFWDAYWDAPSCSLVEKDWWLRNRAGRWELK 672
+ ARYAEL+P+ VDR+ ++CP+F + KL GE P+M W+ G+R FP+ G V +SF++ A+ +P Y CP I+HG++DEI+P ++ E D + TS++ V D HALT P TLSLT K + DFF L K+ +EVE KF + D S +++++ GGQLVG+ F D Y+D L + WLR RAG WELK
Sbjct: 91 YFAARYAELHPNRVDRMVLLCPAFDFHNQFRKLTGENTVFGPPDMDGWQSAGSRPFPMPDGSLVDVPFSFVDGARGHHAFPLYLCPTTIIHGLDDEIIPVDTTKQFWETHEDQGEVTSLLLVPDQHALTAPNTLSLTLKTITDFFRLSHTNKQXXXXXXXXXXXXXXXXXXXXXXAMIEVERKFPMLDESDLERAIEREGGQLVGEQAFVDTYFDWEGYPLTLHNCWLRRRAGLWELK 328
BLAST of mRNA_H-elongata_contig117072.1332.1 vs. uniprot
Match: A0A7S2V169_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V169_9STRA) HSP 1 Score: 143 bits (360), Expect = 7.680e-39 Identity = 69/154 (44.81%), Postives = 96/154 (62.34%), Query Frame = 1
Query: 1 FVLARYAELYPDEVDRIFMICPSFCLGARAPKLLGEPEMIEWERIGARVFPLSTGGEASVRWSFIEEAKVQPDYPEYTCPAMILHGVNDEIVPSAFSRCLVEGSL-------------DLAKRTSVIFVDDDHALTQPTTLSLTSKALIDFFEL 423
++ ARYA L+PD VDRI M+CP F LG+R P+L GE E+ EWE+ G R+F G + + F+E+ QP +P+YTCPA+I+HG +DE+VP SR ++ + DL +RT++ VDDDHALT+ TL+LT K FF L
Sbjct: 22 YIAARYAALHPDRVDRIMMLCPGFDLGSRWPQLFGEQELQEWEQKGFRIFSQQDGSAVRIPYQFVEDGLAQPAFPQYTCPAVIIHGSHDEVVPVQTSRQVLRATSPQRGSCPPGVDWGDLGERTALYVVDDDHALTKDKTLALTLKVAKSFFGL 175
BLAST of mRNA_H-elongata_contig117072.1332.1 vs. uniprot
Match: A0A7S0H3H4_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0H3H4_9EUKA) HSP 1 Score: 117 bits (292), Expect = 1.780e-26 Identity = 76/240 (31.67%), Postives = 119/240 (49.58%), Query Frame = 1
Query: 1 FVLARYAELYPDEVDRIFMICPSFCLGARAPKLLGEPEMIEWERIGARVFP-LSTGGEASVRWSFIEEAKVQPDYPEYTCPAMILHGVNDEIVPSAFSRCLVE-----GSLDLAKRTS---------VIFVDDDHALTQPTTLSLTSKALIDFFELGPEVKRLKSDERGEERDGIQKNVEVEAKFSVDDVSKVKQSVLASGGQLVGDHVFWDAYWDAPS-CSLVEKDWWLRNRAGRWELK 672
+V A YA YP V + +ICPSF + +R + G M +W+ G R+F + + + +SF+E PD+P TCP +ILHG DE+V + S ++ GS ++++ + V D+H +T P TL L + + L E KR SD+ G + EVE K+ + D ++ + +GG+L+ F D YWD +L ++ WLR RAG WE+K
Sbjct: 166 YVAALYASRYPSRVQSLTLICPSFDMKSRWHTVWGPEIMQKWKEEGGRIFKGFNERPDVRIPYSFVESCFKAPDFPVVTCPTVILHGTQDEVVTPSVSERYIKLDNPKGSEHISEKKKGPGGMGNVMLQLVPDNHDMTTPETLKLILGTVSWQWNL-EESKRSDSDKTK----GKSEEYEVETKYMLSDPKACEERIQQAGGKLIAVQSFEDRYWDIRGEWTLAKRSIWLRERAGVWEVK 400
BLAST of mRNA_H-elongata_contig117072.1332.1 vs. uniprot
Match: A0A835YU15_9STRA (CYTH-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU15_9STRA) HSP 1 Score: 110 bits (276), Expect = 1.260e-25 Identity = 63/164 (38.41%), Postives = 91/164 (55.49%), Query Frame = 1
Query: 184 WSFIEEAKVQPDYPEYTCPAMILHGVNDEIVPSAFSRCLVEGSLDLAKRTSVIFVDDDHALTQPTTLSLTSKALIDFFELGPEVKRLKSDERGEERDGIQKNVEVEAKFSVDDVSKVKQSVLASGG-QLVGDHVFWDAYWDAPSCSLVEKDWWLRNRAGRWELK 672
++F+ E+ + P YP Y CPA+ILHG+ DE+VP ++ L+ A T +FV D H L P TL+L + +FF+L E G G +EVE K++V D +V++ +L Q V + +F D+YWD+ SL +D WLR RAG WELK
Sbjct: 3 YAFVAESALLPPYPAYQCPAVILHGLEDEVVPVQTTQGLMTDGTQQADLTRAVFVHDKHGLDTPATLALLPPLISEFFQL----------EEGS--GGSSAAIEVEKKYAVADAQEVEKKLLRQEDVQKVMEMMFIDSYWDSADNSLARQDSWLRLRAGLWELK 154
BLAST of mRNA_H-elongata_contig117072.1332.1 vs. uniprot
Match: A0A7S4C2Q4_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4C2Q4_CHRCT) HSP 1 Score: 101 bits (251), Expect = 2.160e-23 Identity = 51/127 (40.16%), Postives = 75/127 (59.06%), Query Frame = 1
Query: 10 ARYAELYPDEVDRIFMICPSFCLGARAPKLLG-EPEMIEWERIGARVFPL-STGGEASVRWSFIEEAKVQPDYPEYTCPAMILHGVNDEIVPSAFSRCLVEGSLDLAKRTSVIFVDDDHALTQPTTL 384
ARYAEL+P+ VDR+ ++CP F L R +++G E EM W R GAR F + S+G V WSF+EE + P P ++HG+ DE++P S V+ + R S++ + DDHALT P ++
Sbjct: 24 ARYAELFPERVDRLLLLCPGFELPTRWSEVVGGEEEMRRWRRQGARSFTMPSSGAAVRVPWSFVEETRKHVGTPAIQHPCTVIHGLQDEVLPYEVSETFVKSN----PRASLLLLHDDHALTHPNSM 146
BLAST of mRNA_H-elongata_contig117072.1332.1 vs. uniprot
Match: A0A2N2J9Y0_9DELT (Uncharacterized protein n=1 Tax=Deltaproteobacteria bacterium HGW-Deltaproteobacteria-14 TaxID=2013741 RepID=A0A2N2J9Y0_9DELT) HSP 1 Score: 102 bits (254), Expect = 3.130e-23 Identity = 51/122 (41.80%), Postives = 70/122 (57.38%), Query Frame = 1
Query: 1 FVLARYAELYPDEVDRIFMICPSFCLGARAPKLLGEPEMIEWERIGARVFPLSTGGEASVRWSFIEEAKVQPDYPEYTCPAMILHGVNDEIVPSAFSRCLVEGSLDLAKRTSVIFVDDDHAL 366
++ AR+AEL+P+ V R+ ++CP F + AR P+LLG + W GA F G + V W FIE+A P PE CP +ILHG++D +VP A SR K +I +DDDHAL
Sbjct: 81 YLAARWAELHPERVTRLVLLCPGFDMIARWPQLLGADAIARWRAHGALHFADGAGVQTPVHWGFIEDALRHPATPEVACPTLILHGIHDVVVPIAGSRAYAAAH----KNARLIELDDDHAL 198
BLAST of mRNA_H-elongata_contig117072.1332.1 vs. uniprot
Match: A0A7S0P1I8_9EUKA (Hypothetical protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0P1I8_9EUKA) HSP 1 Score: 101 bits (252), Expect = 7.070e-23 Identity = 52/143 (36.36%), Postives = 78/143 (54.55%), Query Frame = 1
Query: 1 FVLARYAELYPDEVDRIFMICPSFCLGARAPKLLG-EPEMIEWERIGARVFPLSTGGE-ASVRWSFIEEAKVQPDYPEYTCPAMILHGVNDEIVPSAFSRCLVEGSLDLAKRTSVIFVDDDHALTQPTTLSLTSKALIDFFEL 423
+ +ARYAELYPD VDR+ ++CPSF LG+R ++G E+ W G R F + GE +V W F+E+ + D P ++HG DE+VP +FS+ + ++ V DDHALT TL + ++ F+L
Sbjct: 83 WAVARYAELYPDRVDRMLLLCPSFRLGSRWEHIVGGSEELAAWHAGGFRAFTVPASGEQVAVSWDFVEQTRHLVDMPTLAHRVTVIHGAEDEVVPPSFSQQFCAQ----CSQAKLVLVQDDHALTAVETLEQLAIEAVELFDL 221
BLAST of mRNA_H-elongata_contig117072.1332.1 vs. uniprot
Match: A0A2E5HQR4_9DELT (Alpha/beta hydrolase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A2E5HQR4_9DELT) HSP 1 Score: 96.7 bits (239), Expect = 5.120e-21 Identity = 52/125 (41.60%), Postives = 69/125 (55.20%), Query Frame = 1
Query: 1 FVLARYAELYPDEVDRIFMICPSFCLGARAPKLLGEPEMIEWERIGARVFPLSTGGEASVRWSFIEEAKVQPDYPEYTCPAMILHGVNDEIVPSAFSRCLVEGSLDLAK---RTSVIFVDDDHAL 366
+V AR+AEL PD+V+R+ ++CP F L R P LLGE WE G F + G E +V W FI +A+ P PE CP +I+HG D IVP +EGS + A ++ VD DH L
Sbjct: 78 WVAARWAELNPDKVERLLLLCPGFNLMERWPALLGEEAWARWEAEGEWPFEDADGREIAVWWRFILDARTHPPLPEVPCPTLIIHGTRDVIVP-------LEGSREYAASRDHVELVEVDSDHGL 195 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117072.1332.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig117072.1332.1 >prot_H-elongata_contig117072.1332.1 ID=prot_H-elongata_contig117072.1332.1|Name=mRNA_H-elongata_contig117072.1332.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=224bp FVLARYAELYPDEVDRIFMICPSFCLGARAPKLLGEPEMIEWERIGARVFback to top mRNA from alignment at H-elongata_contig117072:199..1867+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig117072.1332.1 ID=mRNA_H-elongata_contig117072.1332.1|Name=mRNA_H-elongata_contig117072.1332.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1669bp|location=Sequence derived from alignment at H-elongata_contig117072:199..1867+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig117072:199..1867+ >mRNA_H-elongata_contig117072.1332.1 ID=mRNA_H-elongata_contig117072.1332.1|Name=mRNA_H-elongata_contig117072.1332.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1344bp|location=Sequence derived from alignment at H-elongata_contig117072:199..1867+ (Himanthalia elongata Himel1 dioecious)back to top |