mRNA_H-elongata_contig11705.1330.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11705.1330.1
Unique NamemRNA_H-elongata_contig11705.1330.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11705.1330.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11705contigH-elongata_contig11705:55..2237 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1933
Cds size1383
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11705.1330.1prot_H-elongata_contig11705.1330.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11705 600..2232 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929680.671304-UTR-H-elongata_contig11705:54..5991622929680.671304-UTR-H-elongata_contig11705:54..599Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11705 55..599 -
1691679117.228397-UTR-H-elongata_contig11705:54..5991691679117.228397-UTR-H-elongata_contig11705:54..599Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11705 55..599 -
1622929680.720842-UTR-H-elongata_contig11705:2232..22371622929680.720842-UTR-H-elongata_contig11705:2232..2237Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11705 2233..2237 -
1691679117.2687726-UTR-H-elongata_contig11705:2232..22371691679117.2687726-UTR-H-elongata_contig11705:2232..2237Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11705 2233..2237 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929680.6881208-CDS-H-elongata_contig11705:599..19251622929680.6881208-CDS-H-elongata_contig11705:599..1925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11705 600..1925 -
1691679117.2374616-CDS-H-elongata_contig11705:599..19251691679117.2374616-CDS-H-elongata_contig11705:599..1925Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11705 600..1925 -
1622929680.7071939-CDS-H-elongata_contig11705:2175..22321622929680.7071939-CDS-H-elongata_contig11705:2175..2232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11705 2176..2232 -
1691679117.2473218-CDS-H-elongata_contig11705:2175..22321691679117.2473218-CDS-H-elongata_contig11705:2175..2232Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11705 2176..2232 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11705.1330.1

>prot_H-elongata_contig11705.1330.1 ID=prot_H-elongata_contig11705.1330.1|Name=mRNA_H-elongata_contig11705.1330.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=461bp
MAAELRSPGNSGPPKARLKGKIIRYNFANMPRNSANAAWTGQGGPTWFIW
LTDASVTIRGNVTPLRGITQLGVRHRIEGKAPKRVHNASRDVKLGNGHQE
GGKSLGGGCQQKTLQQPRLKRKRAKEETRRPKDGGLSDRGKGRGERKNGG
SGGADRRNRRQSAVVSSKVVVSSDIEESGDGLDDLDDLDDLEKELEEMDD
NCDSTKAGSGEDASGRSEEDEESDGAESDGSIGAATLEIERFLESMKGEA
TGGKTFAAEESRVLAAGEEEGGEENVSSCRAGASGKALERELVSSGYNST
LPQGTKGLGCGQETLKVGNNCKGVHVDGARRESGAEDGENDRSAPEKHRV
GGTASVAPELCDSLSPKKNKPEEKEEDVDSDLEGDLDEILEEVDEVSDPE
LDLELVRAKGDNGSKAREEGRGSDPFALDEEGLEDVSSYSEEESGDEDAV
GDIEDFLARI*
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mRNA from alignment at H-elongata_contig11705:55..2237-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11705.1330.1 ID=mRNA_H-elongata_contig11705.1330.1|Name=mRNA_H-elongata_contig11705.1330.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=2183bp|location=Sequence derived from alignment at H-elongata_contig11705:55..2237- (Himanthalia elongata Himel1 dioecious)
AGATCATGGCTGCGGAGCTGCGATCACCTGGAAATTCTGGGCCTCCGAAA
GCTAGACTTAAGGTACGGTAGCTTCTGGGTGGTTGGCTTTTGCGCAGGTA
TCGAATGACGTTTTAGGATAACAAAGTCGCCGCTGTGTGTGCAGCTTGGG
GGATACAAACGGTCTGCTGGCTCTGCCTCCCTCGCCAGATTCTGTGCACG
AGATCACTTACAGCTTTTTTACAAAAACCGACGTGCTGCAATGGAGAGCT
CAGAGCAATTTTTACGGCGTGCTGCCCGCGTTCGTTCGCTCGTTCGTTCA
TGCCACGCAAAGGGCAAGATCATCAGGTACAACTTCGCGAACATGCCACG
AAACTCGGCGAACGCCGCTTGGACGGGACAGGGGGGCCCGACGTGGTTTA
TTTGGCTCACGGACGCGTCGGTCACGATACGCGGTAACGTTACCCCTCTG
CGAGGAATCACGCAGCTGGGAGTTCGACATCGCATCGAAGGAAAAGCGCC
GAAAAGAGTCCACAACGCATCACGGGACGTAAAGCTGGGGAATGGCCATC
AAGAAGGGGGTAAAAGCCTGGGGGGGGGATGTCAGCAGAAGACATTGCAG
CAACCGCGGTTGAAGAGAAAGCGCGCGAAAGAGGAGACGCGACGCCCAAA
GGATGGTGGATTGAGTGATAGAGGCAAAGGGAGAGGGGAGCGTAAGAATG
GAGGGAGCGGGGGCGCCGACCGACGGAATCGTCGACAATCAGCTGTCGTA
TCGAGCAAAGTAGTGGTCAGTAGCGACATCGAGGAAAGCGGAGACGGCCT
CGACGACCTCGACGATTTAGACGACCTCGAGAAAGAGCTCGAAGAAATGG
ATGATAATTGTGACAGCACAAAGGCTGGAAGCGGCGAAGATGCTTCCGGG
AGAAGCGAGGAAGACGAAGAATCTGACGGCGCCGAATCGGATGGCTCGAT
CGGTGCCGCCACCCTTGAAATCGAACGATTCTTGGAATCTATGAAAGGCG
AGGCCACTGGAGGGAAAACATTTGCCGCTGAGGAGAGTCGAGTTCTTGCG
GCGGGCGAAGAGGAGGGGGGAGAAGAAAATGTCTCTAGTTGCCGAGCCGG
GGCAAGTGGGAAGGCGCTTGAAAGGGAGTTGGTTTCTAGCGGTTACAACA
GCACGCTCCCGCAAGGCACCAAGGGGCTGGGGTGCGGTCAGGAGACGCTA
AAAGTAGGAAACAACTGTAAGGGAGTTCATGTAGATGGTGCTAGAAGAGA
GAGTGGTGCCGAGGATGGAGAAAACGACCGCAGCGCACCCGAAAAACACA
GAGTAGGAGGAACGGCCTCGGTGGCACCTGAACTCTGCGACTCTCTGTCA
CCCAAGAAAAATAAACCAGAGGAGAAAGAAGAGGACGTGGATTCCGACTT
AGAGGGCGACTTAGACGAGATTCTCGAGGAAGTCGACGAGGTGAGCGATC
CCGAGCTCGATCTCGAGCTTGTGCGTGCGAAGGGCGACAACGGCAGCAAG
GCGCGGGAAGAGGGGCGAGGATCCGATCCGTTTGCGCTTGACGAGGAAGG
GTTGGAGGACGTCAGCAGCTACTCGGAGGAGGAGTCTGGCGACGAGGACG
CAGTCGGGGACATTGAAGATTTTCTGGCGCGAATTTAGCCACCATTCAGC
AGGACGTGTTCCGGGCGTCGGCAGTCGAGCCCAGTGGTGAGCCGTGGACA
TCTTGCGACTTCTTCACCCGCTACTCTCTATCGTGGAGCAATAGCCAGTT
TTCTTGTTTCAAAGCACTGGTGCAGCTGAGCTCCGGGCTGTCGTGTGTTT
TGTCTTCAGCGTGATGCAGCCTGAGCCTTATGAATACCCTCACAGCACAA
GCTAAGATCACTTGCCATGACTGAGATCTATCCCTCGATGAGCGACATGG
GCGTCGCTCTGGTGCTGCTCCTGCTCAACGTGGGGCTACCGTGCAGCGCG
GCGGCGGGGTTATTCCGCTGCTCGCTCACCGTACGCTTAGTTTCGGGTGT
CTGCTTTTCATCCATTTTCGTTCATCCGAGGCGGTCGTGCGAAAGCTAGC
GCCTTCGGTGTAATGGTGCAACCTTAACGGCGGTTGCTGGGTCTGACATG
GCGCCGAGCCGGGATCGGGTTGGTCGAAAACAAAATGTTAATCGTTAAAC
TCCAACGGTTAAGTCACGACACTGCCAGGGTAT
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Coding sequence (CDS) from alignment at H-elongata_contig11705:55..2237-

>mRNA_H-elongata_contig11705.1330.1 ID=mRNA_H-elongata_contig11705.1330.1|Name=mRNA_H-elongata_contig11705.1330.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=2766bp|location=Sequence derived from alignment at H-elongata_contig11705:55..2237- (Himanthalia elongata Himel1 dioecious)
ATGGCTGCGGAGCTGCGATCACCTGGAAATTCTGGGCCTCCGAAAGCTAG
ACTTAAGATGGCTGCGGAGCTGCGATCACCTGGAAATTCTGGGCCTCCGA
AAGCTAGACTTAAGGGCAAGATCATCAGGTACAACTTCGCGAACATGCCA
CGAAACTCGGCGAACGCCGCTTGGACGGGACAGGGGGGCCCGACGTGGTT
TATTTGGCTCACGGACGCGTCGGTCACGATACGCGGTAACGTTACCCCTC
TGCGAGGAATCACGCAGCTGGGAGTTCGACATCGCATCGAAGGAAAAGCG
CCGAAAAGAGTCCACAACGCATCACGGGACGTAAAGCTGGGGAATGGCCA
TCAAGAAGGGGGTAAAAGCCTGGGGGGGGGATGTCAGCAGAAGACATTGC
AGCAACCGCGGTTGAAGAGAAAGCGCGCGAAAGAGGAGACGCGACGCCCA
AAGGATGGTGGATTGAGTGATAGAGGCAAAGGGAGAGGGGAGCGTAAGAA
TGGAGGGAGCGGGGGCGCCGACCGACGGAATCGTCGACAATCAGCTGTCG
TATCGAGCAAAGTAGTGGTCAGTAGCGACATCGAGGAAAGCGGAGACGGC
CTCGACGACCTCGACGATTTAGACGACCTCGAGAAAGAGCTCGAAGAAAT
GGATGATAATTGTGACAGCACAAAGGCTGGAAGCGGCGAAGATGCTTCCG
GGAGAAGCGAGGAAGACGAAGAATCTGACGGCGCCGAATCGGATGGCTCG
ATCGGTGCCGCCACCCTTGAAATCGAACGATTCTTGGAATCTATGAAAGG
CGAGGCCACTGGAGGGAAAACATTTGCCGCTGAGGAGAGTCGAGTTCTTG
CGGCGGGCGAAGAGGAGGGGGGAGAAGAAAATGTCTCTAGTTGCCGAGCC
GGGGCAAGTGGGAAGGCGCTTGAAAGGGAGTTGGTTTCTAGCGGTTACAA
CAGCACGCTCCCGCAAGGCACCAAGGGGCTGGGGTGCGGTCAGGAGACGC
TAAAAGTAGGAAACAACTGTAAGGGAGTTCATGTAGATGGTGCTAGAAGA
GAGAGTGGTGCCGAGGATGGAGAAAACGACCGCAGCGCACCCGAAAAACA
CAGAGTAGGAGGAACGGCCTCGGTGGCACCTGAACTCTGCGACTCTCTGT
CACCCAAGAAAAATAAACCAGAGGAGAAAGAAGAGGACGTGGATTCCGAC
TTAGAGGGCGACTTAGACGAGATTCTCGAGGAAGTCGACGAGGTGAGCGA
TCCCGAGCTCGATCTCGAGCTTGTGCGTGCGAAGGGCGACAACGGCAGCA
AGGCGCGGGAAGAGGGGCGAGGATCCGATCCGTTTGCGCTTGACGAGGAA
GGGTTGGAGGACGTCAGCAGCTACTCGGAGGAGGAGTCTGGCGACGAGGA
CGCAGTCGGGGACATTGAAGATTTTCTGGCGCGAATTTAGGGCAAGATCA
TCAGGTACAACTTCGCGAACATGCCACGAAACTCGGCGAACGCCGCTTGG
ACGGGACAGGGGGGCCCGACGTGGTTTATTTGGCTCACGGACGCGTCGGT
CACGATACGCGGTAACGTTACCCCTCTGCGAGGAATCACGCAGCTGGGAG
TTCGACATCGCATCGAAGGAAAAGCGCCGAAAAGAGTCCACAACGCATCA
CGGGACGTAAAGCTGGGGAATGGCCATCAAGAAGGGGGTAAAAGCCTGGG
GGGGGGATGTCAGCAGAAGACATTGCAGCAACCGCGGTTGAAGAGAAAGC
GCGCGAAAGAGGAGACGCGACGCCCAAAGGATGGTGGATTGAGTGATAGA
GGCAAAGGGAGAGGGGAGCGTAAGAATGGAGGGAGCGGGGGCGCCGACCG
ACGGAATCGTCGACAATCAGCTGTCGTATCGAGCAAAGTAGTGGTCAGTA
GCGACATCGAGGAAAGCGGAGACGGCCTCGACGACCTCGACGATTTAGAC
GACCTCGAGAAAGAGCTCGAAGAAATGGATGATAATTGTGACAGCACAAA
GGCTGGAAGCGGCGAAGATGCTTCCGGGAGAAGCGAGGAAGACGAAGAAT
CTGACGGCGCCGAATCGGATGGCTCGATCGGTGCCGCCACCCTTGAAATC
GAACGATTCTTGGAATCTATGAAAGGCGAGGCCACTGGAGGGAAAACATT
TGCCGCTGAGGAGAGTCGAGTTCTTGCGGCGGGCGAAGAGGAGGGGGGAG
AAGAAAATGTCTCTAGTTGCCGAGCCGGGGCAAGTGGGAAGGCGCTTGAA
AGGGAGTTGGTTTCTAGCGGTTACAACAGCACGCTCCCGCAAGGCACCAA
GGGGCTGGGGTGCGGTCAGGAGACGCTAAAAGTAGGAAACAACTGTAAGG
GAGTTCATGTAGATGGTGCTAGAAGAGAGAGTGGTGCCGAGGATGGAGAA
AACGACCGCAGCGCACCCGAAAAACACAGAGTAGGAGGAACGGCCTCGGT
GGCACCTGAACTCTGCGACTCTCTGTCACCCAAGAAAAATAAACCAGAGG
AGAAAGAAGAGGACGTGGATTCCGACTTAGAGGGCGACTTAGACGAGATT
CTCGAGGAAGTCGACGAGGTGAGCGATCCCGAGCTCGATCTCGAGCTTGT
GCGTGCGAAGGGCGACAACGGCAGCAAGGCGCGGGAAGAGGGGCGAGGAT
CCGATCCGTTTGCGCTTGACGAGGAAGGGTTGGAGGACGTCAGCAGCTAC
TCGGAGGAGGAGTCTGGCGACGAGGACGCAGTCGGGGACATTGAAGATTT
TCTGGCGCGAATTTAG
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