mRNA_H-elongata_contig117034.1329.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig117034.1329.1
Unique NamemRNA_H-elongata_contig117034.1329.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig117034.1329.1 vs. uniprot
Match: A0A6H5KR72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR72_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 8.020e-11
Identity = 31/42 (73.81%), Postives = 35/42 (83.33%), Query Frame = 1 
Query:  112 NNLAGLLATMGKSGEALPLFTRANQIYVRQLGDAHPHSVATQ 237
            NN+AGLLAT GK  EALPLF R++ IYVR LG+ HPHSVATQ
Sbjct:  259 NNVAGLLATTGKPEEALPLFARSHDIYVRHLGENHPHSVATQ 300
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BLAST of mRNA_H-elongata_contig117034.1329.1 vs. uniprot
Match: UPI0003775232 (tetratricopeptide repeat protein n=1 Tax=Frankia elaeagni TaxID=222534 RepID=UPI0003775232)

HSP 1 Score: 47.0 bits (110), Expect = 3.630e-5
Identity = 23/38 (60.53%), Postives = 27/38 (71.05%), Query Frame = 1 
Query:   67 EACLGPDDIKVASSLNNLAGLLATMGKSGEALPLFTRA 180
            EA  GPD  +VA  LNNLA  L T+G++GEALPLF  A
Sbjct:    1 EATYGPDHPEVALGLNNLASALRTLGRAGEALPLFQHA 38
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig117034.1329.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KR72_9PHAE8.020e-1173.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI00037752323.630e-560.53tetratricopeptide repeat protein n=1 Tax=Frankia e... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig117034contigH-elongata_contig117034:573..1321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-17_001800.1
Exons2
Model size237
Cds size237
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929680.606123-CDS-H-elongata_contig117034:572..7251622929680.606123-CDS-H-elongata_contig117034:572..725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117034 573..725 -
1691679117.20599-CDS-H-elongata_contig117034:572..7251691679117.20599-CDS-H-elongata_contig117034:572..725Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117034 573..725 -
1622929680.6232839-CDS-H-elongata_contig117034:1237..13211622929680.6232839-CDS-H-elongata_contig117034:1237..1321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117034 1238..1321 -
1691679117.219159-CDS-H-elongata_contig117034:1237..13211691679117.219159-CDS-H-elongata_contig117034:1237..1321Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig117034 1238..1321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig117034.1329.1prot_H-elongata_contig117034.1329.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig117034 573..1321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig117034.1329.1

>prot_H-elongata_contig117034.1329.1 ID=prot_H-elongata_contig117034.1329.1|Name=mRNA_H-elongata_contig117034.1329.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=79bp
IYNKQGEYQQALDIARRVTNAHEACLGPDDIKVASSLNNLAGLLATMGKS
GEALPLFTRANQIYVRQLGDAHPHSVATQ
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mRNA from alignment at H-elongata_contig117034:573..1321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig117034.1329.1 ID=mRNA_H-elongata_contig117034.1329.1|Name=mRNA_H-elongata_contig117034.1329.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=749bp|location=Sequence derived from alignment at H-elongata_contig117034:573..1321- (Himanthalia elongata Himel1 dioecious)
ATCTACAACAAACAGGGAGAGTACCAGCAGGCGCTGGACATCGCGAGGCG
CGTGACGAATGCTCACGAAGCGTGCCTGGGTCCGGTAAGATTTCCAAGGA
GGTGTTTTCCTGTCTGTCTTCGTCTCCCGTGTAGGTTGCACGTCCTTACG
TGCCTCAAGCGATACAAGAGATACACTTTCGCGCAAGAGCAAAAACGGAG
TAGATTGTAATAGAGCAGTAAAAGCCGTCGCGGTAGAATATTATGTTAAA
TTTTACCTACAGTTGTACAATAATTAAACGCTATGTGGATGCGTCTAAAG
GGCCGAATCGCAGCAGAAGCATGCGTTCCCCAAAAGAAATGCTGATTGTT
TCGGAAAAGCAAAACAAAAAAAGATTGGCGATTACTGATTGATTTTGCCT
TGCTAGGAAAGGGATGCAAAATTTTGAGTCATCACGCCTCCTCCCTCTGG
ACGTGTGACGCACCGCAACACTCTCGCGTTCTCCCACGCGGTTTCACCCC
ACGCCCCCCCCCCCCCCCGACCCCCGCCTAAACGCCTTTTTTTTTTCGCT
GAACCACAAACTCACGCTATTTCAAACATTCACCACCTTGGTTCAGGACG
ATATCAAGGTGGCGTCCTCCCTAAACAACTTGGCCGGGCTCCTAGCGACG
ATGGGAAAGTCTGGCGAAGCGCTACCGCTCTTTACCCGCGCGAATCAGAT
CTACGTCCGACAACTCGGGGACGCGCACCCGCACTCTGTCGCGACGCAG
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Coding sequence (CDS) from alignment at H-elongata_contig117034:573..1321-

>mRNA_H-elongata_contig117034.1329.1 ID=mRNA_H-elongata_contig117034.1329.1|Name=mRNA_H-elongata_contig117034.1329.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=474bp|location=Sequence derived from alignment at H-elongata_contig117034:573..1321- (Himanthalia elongata Himel1 dioecious)
ATCTACAACAAACAGGGAGAGTACCAGCAGGCGCTGGACATCGCGAGGCG
CGTGACGAATGCTCACGAAGCGTGCCTGGGTCCGATCTACAACAAACAGG
GAGAGTACCAGCAGGCGCTGGACATCGCGAGGCGCGTGACGAATGCTCAC
GAAGCGTGCCTGGGTCCGGACGATATCAAGGTGGCGTCCTCCCTAAACAA
CTTGGCCGGGCTCCTAGCGACGATGGGAAAGTCTGGCGAAGCGCTACCGC
TCTTTACCCGCGCGAATCAGATCTACGTCCGACAACTCGGGGACGCGCAC
CCGCACTCTGTCGCGACGCAGGACGATATCAAGGTGGCGTCCTCCCTAAA
CAACTTGGCCGGGCTCCTAGCGACGATGGGAAAGTCTGGCGAAGCGCTAC
CGCTCTTTACCCGCGCGAATCAGATCTACGTCCGACAACTCGGGGACGCG
CACCCGCACTCTGTCGCGACGCAG
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