mRNA_H-elongata_contig11702.1328.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11702.1328.1
Unique NamemRNA_H-elongata_contig11702.1328.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11702.1328.1 vs. uniprot
Match: D7FKW9_ECTSI (Similar to Ubiquitin carboxyl-terminal hydrolase 15 (Ubiquitin thiolesterase 15) (Ubiquitin-specific processing protease 15) (Deubiquitinating enzyme 15) (Unph-2) (Unph4) isoform 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKW9_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 4.560e-17
Identity = 41/65 (63.08%), Postives = 46/65 (70.77%), Query Frame = 1 
Query:    1 FYLLPSPQQEKDKVLTQLTKHTTEECQWIYLVAASWWRYWCTYAGLTLEDFQRVPEASALGLGHT 195
            FYLLPSPQQEKDKVL  L ++  EE Q + LVA+ WW YW  YA LT ED  RVPE +ALGL  T
Sbjct:  304 FYLLPSPQQEKDKVLAHLMEYAIEEAQCMCLVASPWWSYWSNYAALTKEDVLRVPERTALGLDKT 368
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11702.1328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKW9_ECTSI4.560e-1763.08Similar to Ubiquitin carboxyl-terminal hydrolase 1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11702contigH-elongata_contig11702:6694..7702 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score85.9
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog2880.D7FKW9
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5560@1,KOG1870@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size317
Cds size315
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929680.5376568-CDS-H-elongata_contig11702:6694..69701622929680.5376568-CDS-H-elongata_contig11702:6694..6970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11702 6695..6970 -
1691679117.168348-CDS-H-elongata_contig11702:6694..69701691679117.168348-CDS-H-elongata_contig11702:6694..6970Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11702 6695..6970 -
1622929680.5564694-CDS-H-elongata_contig11702:7663..77021622929680.5564694-CDS-H-elongata_contig11702:7663..7702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11702 7664..7702 -
1691679117.1884246-CDS-H-elongata_contig11702:7663..77021691679117.1884246-CDS-H-elongata_contig11702:7663..7702Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11702 7664..7702 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11702.1328.1prot_H-elongata_contig11702.1328.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11702 6695..7702 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11702.1328.1

>prot_H-elongata_contig11702.1328.1 ID=prot_H-elongata_contig11702.1328.1|Name=mRNA_H-elongata_contig11702.1328.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
FYLLPSPQQEKDKVLTQLTKHTTEECQWIYLVAASWWRYWCTYAGLTLED
FQRVPEASALGLGHTQCPEPSVSSEDLATVESPERVGADVEGGNGYSLSF
GGTRE
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mRNA from alignment at H-elongata_contig11702:6694..7702-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11702.1328.1 ID=mRNA_H-elongata_contig11702.1328.1|Name=mRNA_H-elongata_contig11702.1328.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1009bp|location=Sequence derived from alignment at H-elongata_contig11702:6694..7702- (Himanthalia elongata Himel1 dioecious)
TTCTACTTACTGCCGTCGCCTCAGCAGGAGAAGGATAAGGTCGGGACCAA
AGAGGGTTGGGGTAATTTGATGTTAATGGCTACGTGGTTTTGTGTGCAGT
ACCCGTTTGCATATACTTTTATGTGTTGTTCTTATTATCTCCGCAAAAAA
GGTGTTATTATTATTCATTATTCCATTATTCCAATCAGAACTAATCCTCG
ACCATGGAGTAGAGTGGATTCTGGAATAATATTCCTTTTGTAATGAATTC
GTTTTTTTGTTTGTCTGCTGGAAGATTCCGTCAAGCTCAGCTCAGCTCAG
CTCAGCTATCGTTAAGCGAAAGATAAATCTGTCTTGTGGTTGGATAACTG
TTATTCTTTACACCGTAATACTAACACTATCACTAACGCTAAACACGTAT
TTAATTTAGGGCAATTCTCGACAATTCTTGACCGATCTCTAAAAGGACAA
GTGCGTCGTCTCGCATGTTTTTTTGCTTTTTTTACAGACTCCAGGCGCAC
CCGGACACTCTTGTTTTGTTTTACCAGCTAGGCTTATAATTTTTAGCAGC
ACAGCACAGCATATACGGCATCCTTCTATCTTTCTCTTTTTCTCTCTCTC
TCCTTCATCACCTCGCAATCGAATCGCAAAATCGAATCGCTCCCTCTTAA
AAACACGCCAAACAAAATAAAAACTCACAAAGGCCCAAGTCATCCCATCA
TCCCATGATCTTTCGATCTGCCTCCCGCGAAGGTGCTAACCCAGCTGACG
AAGCACACCACGGAAGAGTGCCAATGGATATACCTCGTGGCCGCGTCATG
GTGGCGGTACTGGTGCACCTACGCCGGCCTCACCCTCGAAGATTTCCAGC
GGGTCCCGGAGGCGTCGGCGCTTGGACTAGGCCACACGCAGTGCCCGGAG
CCCAGTGTCTCGTCGGAGGACCTGGCGACGGTGGAATCTCCGGAGAGAGT
CGGAGCGGATGTTGAGGGCGGTAACGGTTACAGTTTGAGTTTTGGAGGCA
CGAGGGAGG
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Coding sequence (CDS) from alignment at H-elongata_contig11702:6694..7702-

>mRNA_H-elongata_contig11702.1328.1 ID=mRNA_H-elongata_contig11702.1328.1|Name=mRNA_H-elongata_contig11702.1328.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig11702:6694..7702- (Himanthalia elongata Himel1 dioecious)
TTCTACTTACTGCCGTCGCCTCAGCAGGAGAAGGATAAGTTCTACTTACT
GCCGTCGCCTCAGCAGGAGAAGGATAAGGTGCTAACCCAGCTGACGAAGC
ACACCACGGAAGAGTGCCAATGGATATACCTCGTGGCCGCGTCATGGTGG
CGGTACTGGTGCACCTACGCCGGCCTCACCCTCGAAGATTTCCAGCGGGT
CCCGGAGGCGTCGGCGCTTGGACTAGGCCACACGCAGTGCCCGGAGCCCA
GTGTCTCGTCGGAGGACCTGGCGACGGTGGAATCTCCGGAGAGAGTCGGA
GCGGATGTTGAGGGCGGTAACGGTTACAGTTTGAGTTTTGGAGGCACGAG
GGAGGTGCTAACCCAGCTGACGAAGCACACCACGGAAGAGTGCCAATGGA
TATACCTCGTGGCCGCGTCATGGTGGCGGTACTGGTGCACCTACGCCGGC
CTCACCCTCGAAGATTTCCAGCGGGTCCCGGAGGCGTCGGCGCTTGGACT
AGGCCACACGCAGTGCCCGGAGCCCAGTGTCTCGTCGGAGGACCTGGCGA
CGGTGGAATCTCCGGAGAGAGTCGGAGCGGATGTTGAGGGCGGTAACGGT
TACAGTTTGAGTTTTGGAGGCACGAGGGAG
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