mRNA_H-elongata_contig11702.1327.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11702.1327.1
Unique NamemRNA_H-elongata_contig11702.1327.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11702.1327.1 vs. uniprot
Match: D7FKW9_ECTSI (Similar to Ubiquitin carboxyl-terminal hydrolase 15 (Ubiquitin thiolesterase 15) (Ubiquitin-specific processing protease 15) (Deubiquitinating enzyme 15) (Unph-2) (Unph4) isoform 11 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKW9_ECTSI)

HSP 1 Score: 159 bits (403), Expect = 4.030e-41
Identity = 86/146 (58.90%), Postives = 99/146 (67.81%), Query Frame = 3 
Query:    3 GGAEWEVAPDLDLGANYVLLPKPLWDVMMDWYGGGPVFCRRVVKVSVPRIVHPERVTPTITIKNGVTNAADGYDGDGHDGDAPHHDNVLVVDLYPLALHVSLCDLTAGRPSGRERLVLSSHHVTVRDMLTEVLQTSRLHGVRRPLS 440
            GGAEWEVAP+LDLG +YV+LPK LWDVM+DWYGGGPVF R+VV VS   +  PE+                   G G D +A      L VDLYPLALHVS+CD  AGRP GRERLVL+SHHV VRDML +VL +SRL G+ R LS
Sbjct:  452 GGAEWEVAPNLDLGEDYVMLPKSLWDVMVDWYGGGPVFARQVVNVS-SNLELPEKAR-----------------GGGDDAEAEPSTARLAVDLYPLALHVSMCD-PAGRPGGRERLVLTSHHVHVRDMLADVLDSSRLQGMSRGLS 578
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11702.1327.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FKW9_ECTSI4.030e-4158.90Similar to Ubiquitin carboxyl-terminal hydrolase 1... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11702contigH-elongata_contig11702:2344..5403 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue6e-22
Seed eggNOG ortholog2880.D7FKW9
EggNOG free text desc.ubiquitinyl hydrolase activity
EggNOG OGsCOG5560@1,KOG1870@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons4
Model size709
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11702.1327.1prot_H-elongata_contig11702.1327.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11702 3642..5320 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929680.413856-UTR-H-elongata_contig11702:2343..23801622929680.413856-UTR-H-elongata_contig11702:2343..2380Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11702 2344..2380 -
1691679117.1151376-UTR-H-elongata_contig11702:2343..23801691679117.1151376-UTR-H-elongata_contig11702:2343..2380Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11702 2344..2380 -
1622929680.427426-UTR-H-elongata_contig11702:3457..36411622929680.427426-UTR-H-elongata_contig11702:3457..3641Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11702 3458..3641 -
1691679117.1273193-UTR-H-elongata_contig11702:3457..36411691679117.1273193-UTR-H-elongata_contig11702:3457..3641Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11702 3458..3641 -
1622929680.494622-UTR-H-elongata_contig11702:5320..54031622929680.494622-UTR-H-elongata_contig11702:5320..5403Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11702 5321..5403 -
1691679117.1578834-UTR-H-elongata_contig11702:5320..54031691679117.1578834-UTR-H-elongata_contig11702:5320..5403Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11702 5321..5403 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929680.4437938-CDS-H-elongata_contig11702:3641..36581622929680.4437938-CDS-H-elongata_contig11702:3641..3658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11702 3642..3658 -
1691679117.1352031-CDS-H-elongata_contig11702:3641..36581691679117.1352031-CDS-H-elongata_contig11702:3641..3658Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11702 3642..3658 -
1622929680.4661324-CDS-H-elongata_contig11702:4415..46241622929680.4661324-CDS-H-elongata_contig11702:4415..4624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11702 4416..4624 -
1691679117.1425734-CDS-H-elongata_contig11702:4415..46241691679117.1425734-CDS-H-elongata_contig11702:4415..4624Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11702 4416..4624 -
1622929680.483545-CDS-H-elongata_contig11702:5141..53201622929680.483545-CDS-H-elongata_contig11702:5141..5320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11702 5142..5320 -
1691679117.1501677-CDS-H-elongata_contig11702:5141..53201691679117.1501677-CDS-H-elongata_contig11702:5141..5320Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11702 5142..5320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11702.1327.1

>prot_H-elongata_contig11702.1327.1 ID=prot_H-elongata_contig11702.1327.1|Name=mRNA_H-elongata_contig11702.1327.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=135bp
MMDWYGGGPVFCRRVVKVSVPRIVHPERVTPTITIKNGVTNAADGYDGDG
HDGDAPHHDNVLVVDLYPLALHVSLCDLTAGRPSGRERLVLSSHHVTVRD
MLTEVLQTSRLHGVRRPLSGLPGLSGLSGGQCRW*
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mRNA from alignment at H-elongata_contig11702:2344..5403-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11702.1327.1 ID=mRNA_H-elongata_contig11702.1327.1|Name=mRNA_H-elongata_contig11702.1327.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=3060bp|location=Sequence derived from alignment at H-elongata_contig11702:2344..5403- (Himanthalia elongata Himel1 dioecious)
AGGGCGGGGCGGAGTGGGAGGTAGCCCCAGATCTCGACCTCGGCGCCAAC
TACGTCCTGCTACCGAAGCCGTTGTGGGATGTCATGATGGATTGGTATGG
AGGAGGGCCGGTTTTCTGTCGGAGGGTGGTGAAGGTGTCCGTGCCCCGCA
TCGTGCACCCGGAAAGGGTTACTCCTACTATTACTATTAAGAATGGTGTA
ACGAATGCCGCCGATGGCTACGATGGGGATGGCCACGATGGCGATGCACC
GCACCATGACAAGTAAGAGGAGGACACGCGTGATGTCAGTCGAATGTATT
ATTTTCGAGTGAGTTTGTTTTATTAGAATGTGTGTCTCTGTGTGCGAAGC
GAGCCTTTGTCTCTTTTCTCTAGTTCTCTCTCTCTTTGTTCCTCTCCCTC
TCTGTTCCTCTCCCTCTCTCTCTCTCTGTCTGTGTTGTTGCCTGGAGGCG
ATTATTCGATCCCCAGCAGATTTACTGGTAGCAGTCCGGTATTTTTGTTT
GTTGTTATTGTTACTGGTTTAAAGTATTGCCATTACGATATTTCCATTAC
TGCCATTACCATATGTGCGTTACTGTATTAGCGTTACTCTATTAGTAGAA
GTATTAGTGTTTTATCATTACTGTATTATTAATAGTACATTAGCACGAAG
CAGTATTCATATAATAGTCAAGGCGTCTGACGTCATCACACGCCCTCCTT
TCGTCTCCTTTTTTTACTGCCGTCCGTGTTGATCTTTGCTGTCCTTTGCT
GTCCTTTCGTGCCCTCTCGTGTCCTTTAGTGTGCTCGTGGTTGATCTTTA
CCCTCTGGCGCTCCATGTGAGCCTGTGCGACTTGACAGCGGGCCGACCAA
GTGGGCGAGAGCGTCTAGTGCTCTCCTCCCACCACGTGACCGTGAGGGAT
ATGCTGACCGAGGTGCTCCAGACCTCTCGCCTCCACGGCGTGCGGCGACC
CCTCTCGGGACTACCCGGCCTTTCGGGACTGTCGGGTGCTACGGTCTCGT
CCGCGGATAAGGTACAGTAACGATATTATTAGTATTAGTAGTAGGACTAG
TAACTACCGGTAATGCTACAAATAGGTAAAATATCTGGTCTGTTCTGTTT
CTCTCCACTGACTCTCTTTCTCTTGTCTCTTCTCTGTCTATTTCTCCTCC
ACACAGTACGAGATGCCTAAGCTGAACGTTGACCGTTTTAGTCCTGTTTT
GTTGCATCATCTTAGAGTTGTTGGTGTTGGGGGTTGAAATATCTCGAAAG
TTATCGCGACCTTTTTATTCTTTTGCTTTTCACTATTTTACAGTAGTTCT
TCAATCAACGGTGTTGTTAGAACAGCAAGCTTTGCTGAAAAATGAAAAGA
AGTGCTATATTGGATGGGGAAGTGAGAGGGAGAGGCGTTGTGGTGATATT
ATTTCACTGATCCTCTCTCTTTCACTTCTTTCTTTCTTTCTTTCTTTCTC
TCTTTCTTTCTTCAAGCCTTTGGATTTATACCCTCTTTTTGCGTAAAAAT
CATCGGGCGCCGTCAGTGTGCGATTAGAAAAAACGCTTTGCACTAGAAAA
GAGACAGTCGTAGTCAAATATCGTGGAGCAACCTGGGGAGGTGCTTTTAA
GAGTTTCCGATTGATCTATTCCTCGATCTATCTCGATCCGCCTGCCGGCG
AGGAGGAGGGGAAGTCGATCCCTATACCGCCCCCCCTTTTAAGGAATCAT
GTCAATGATTATCCCCTTCGTCTTTAAACGCAGGACACGGCTATGGACAA
TGCCGGTGGTAGCGGTAGCGGTGAGGGGGACACGGCAGAAGGGGACACGG
CAATGACGGAGGAGAGGGAACGAGAACGGGAACGAGAAGAAACGACGGGT
GCTGGCGTAAAGAACCTCGGGGCCCCGGAACAAATGCGACCCGTCCGGCT
TTGGGTATTGGAGGCAGTTCCTAGCGGCTTGATCGACAAACCGCGCGTGA
GTTTCGTTTCTGATGATACCAGAGAACGCTAGCAACACCACCCAAACCCC
GGCACCTAAACCCCGGCCTTGTATCCTTCATTATACTGAAACCGAGGGTA
AAAAGCATGGTTGACTCTCACCGATATTAATATCATTAGGTATAGTAGCA
TTGCCAACGACAGCACCCTTTATTTTTGTAGCGTGGGAAGAGGCGACCGC
TCCGTCTAGCCACGCCAAGCGGTTTGTTCTCGGTTTACCAAGGGAAGGTG
CATGGTGCATGGTGTTGGCGGAGAGTCGCGTCCTTTATCCAAGATATCGA
ACGTTGGGGTGAATGGCTCGTGTGGTCACGGTAGAAAAACACCATCCGGA
AAGGAAAAACGTTCGACGTACTTTCCAATACAAAAGGAAACGACAAATGG
TGCATAATACAAATACTTTTTGACATCTCCAAATAAAAAGAAACACAAAA
AAGAAAAAACACAAAAAAGAGAATATACACAGTTGTTAACGAACTGCGCG
TGGCTGTCCGGGATGCGGTCCTATTGGAAAACGATTGAACGAAGAACCAC
GGGTTGAATAAAATAAAAACAATACAAAGAAAAAACCTAACGTCAAATAA
AGGCAATATGACATCTGCGCGAAAACCCGCCCGGGGGATAAGTTCGCGCC
ACTCCTGGCTAATCAACTATGGCGAGCAAACCAGCACGAGCACGCTTATA
TTGGGCTATCCTCTTCTTGGCCCTCCCCGTCACGTTCGAACATGCTAGTG
CATGCCGTAATCCAGTCCTGACTTTCTCTGCAGCGATCCATTTCTTCATG
ACACGTTCCGCTCCTTGCTCCGCCGTCTTGCGCCATCCCCCCCTCGTCCT
GGGCTGCAATCGTCCACTGGTCGGCGTTGATACCGAAAGCTTTGATGTCT
TCCAAAAGACACCCCATCCACTCTTTTTCCTGCTCCCTCCACGCAACCCA
CGCCCCCCACGATTTGTCTCATATACAGTAATATAGGATAAAGTTTTCAA
AAAATATTTGTGGCGGTACCGTGATGCCTTTGTGGTCCTTCTCGTTCCGC
CCTTCACCCTTCGGAGGGAGCAGGCTGCGGCGCCTGGAGGAGGAGGGAGT
GCATCGCGGG
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Coding sequence (CDS) from alignment at H-elongata_contig11702:2344..5403-

>mRNA_H-elongata_contig11702.1327.1 ID=mRNA_H-elongata_contig11702.1327.1|Name=mRNA_H-elongata_contig11702.1327.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=810bp|location=Sequence derived from alignment at H-elongata_contig11702:2344..5403- (Himanthalia elongata Himel1 dioecious)
ATGATGGATTGGTATGGAGGAGGGCCGGTTTTCTGTCGGAGGGTGGTGAA
GGTGTCCGTGCCCCGCATCGTGCACCCGGAAAGGGTTACTCCTACTATTA
CTATTAAGAATGGTGTAACGAATGCCGCCGATGGCTACGATGGGGATGGC
CACGATGGCGATGCACCGCACCATGACAAATGATGGATTGGTATGGAGGA
GGGCCGGTTTTCTGTCGGAGGGTGGTGAAGGTGTCCGTGCCCCGCATCGT
GCACCCGGAAAGGGTTACTCCTACTATTACTATTAAGAATGGTGTAACGA
ATGCCGCCGATGGCTACGATGGGGATGGCCACGATGGCGATGCACCGCAC
CATGACAATGTGCTCGTGGTTGATCTTTACCCTCTGGCGCTCCATGTGAG
CCTGTGCGACTTGACAGCGGGCCGACCAAGTGGGCGAGAGCGTCTAGTGC
TCTCCTCCCACCACGTGACCGTGAGGGATATGCTGACCGAGGTGCTCCAG
ACCTCTCGCCTCCACGGCGTGCGGCGACCCCTCTCGGGACTACCCGGCCT
TTCGGGACTGTCGGGTGTGTGCTCGTGGTTGATCTTTACCCTCTGGCGCT
CCATGTGAGCCTGTGCGACTTGACAGCGGGCCGACCAAGTGGGCGAGAGC
GTCTAGTGCTCTCCTCCCACCACGTGACCGTGAGGGATATGCTGACCGAG
GTGCTCCAGACCTCTCGCCTCCACGGCGTGCGGCGACCCCTCTCGGGACT
ACCCGGCCTTTCGGGACTGTCGGGTGGACAATGCCGGTGGTAGGACAATG
CCGGTGGTAG
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