mRNA_H-elongata_contig116953.1322.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_H-elongata_contig116953.1322.1
Unique Name	mRNA_H-elongata_contig116953.1322.1
Type	mRNA
Organism	Himanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)

Homology

[Close]

BLAST of mRNA_H-elongata_contig116953.1322.1 vs. uniprot
Match: A0A3L6V663_9STRA (Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID=A0A3L6V663_9STRA)

HSP 1 Score: 201 bits (512), Expect = 3.930e-65
Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1

Query:   13 SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 327
            SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   21 SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 125

[Close]

BLAST of mRNA_H-elongata_contig116953.1322.1 vs. uniprot
Match: A0A024G0M5_9STRA (Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepID=A0A024G0M5_9STRA)

HSP 1 Score: 198 bits (504), Expect = 3.220e-64
Identity = 103/103 (100.00%), Postives = 103/103 (100.00%), Query Frame = 1

Query:   19 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 327
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of mRNA_H-elongata_contig116953.1322.1 vs. uniprot
Match: UPI000528D6F7 (histone H4-like isoform X2 n=2 Tax=Euteleostomi TaxID=117571 RepID=UPI000528D6F7)

HSP 1 Score: 198 bits (504), Expect = 4.020e-64
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 1

Query:    4 QTRSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 327
            Q  S+MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 QQHSSMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110

[Close]

BLAST of mRNA_H-elongata_contig116953.1322.1 vs. uniprot
Match: H4_SOLLC (Histone H4 n=13 Tax=cellular organisms TaxID=131567 RepID=H4_SOLLC)

HSP 1 Score: 198 bits (503), Expect = 4.570e-64
Identity = 102/103 (99.03%), Postives = 103/103 (100.00%), Query Frame = 1

Query:   19 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 327
            MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLK+FLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKIFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 103

[Close]

BLAST of mRNA_H-elongata_contig116953.1322.1 vs. uniprot
Match: G3UKU6_LOXAF (Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=G3UKU6_LOXAF)

HSP 1 Score: 198 bits (503), Expect = 4.720e-64
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 1

Query:   16 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 327
            NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    1 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 104

[Close]

BLAST of mRNA_H-elongata_contig116953.1322.1 vs. uniprot
Match: A0A6G1SJU5_9ACAR (Histone H4 (Fragment) n=1 Tax=Aceria tosichella TaxID=561515 RepID=A0A6G1SJU5_9ACAR)

HSP 1 Score: 199 bits (506), Expect = 4.930e-64
Identity = 103/108 (95.37%), Postives = 106/108 (98.15%), Query Frame = 1

Query:    4 QTRSNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 327
            Q + NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   31 QNKFNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 138

[Close]

BLAST of mRNA_H-elongata_contig116953.1322.1 vs. uniprot
Match: A0A0B6YRU8_9EUPU (Histone H4 (Fragment) n=5 Tax=Bilateria TaxID=33213 RepID=A0A0B6YRU8_9EUPU)

HSP 1 Score: 198 bits (503), Expect = 5.030e-64
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 1

Query:   16 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 327
            NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    3 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 106

[Close]

BLAST of mRNA_H-elongata_contig116953.1322.1 vs. uniprot
Match: W5QFN7_SHEEP (Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5QFN7_SHEEP)

HSP 1 Score: 198 bits (503), Expect = 5.710e-64
Identity = 102/104 (98.08%), Postives = 104/104 (100.00%), Query Frame = 1

Query:   16 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 327
            NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:    7 NMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 110

[Close]

BLAST of mRNA_H-elongata_contig116953.1322.1 vs. uniprot
Match: UPI001F077499 (histone H4-like n=1 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F077499)

HSP 1 Score: 199 bits (506), Expect = 5.990e-64
Identity = 103/105 (98.10%), Postives = 105/105 (100.00%), Query Frame = 1

Query:   13 SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 327
            SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   40 SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 144

[Close]

BLAST of mRNA_H-elongata_contig116953.1322.1 vs. uniprot
Match: A0A2S2QRE4_9HEMI (Histone H4 (Fragment) n=4 Tax=Hexapoda TaxID=6960 RepID=A0A2S2QRE4_9HEMI)

HSP 1 Score: 198 bits (503), Expect = 7.150e-64
Identity = 102/105 (97.14%), Postives = 105/105 (100.00%), Query Frame = 1

Query:   13 SNMSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYGFGG 327
            SNM+GRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRD+VTYTEHA+RKTVTAMDVVYALKRQGRTLYGFGG
Sbjct:   13 SNMTGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLYGFGG 117

The following BLAST results are available for this feature:

BLAST of mRNA_H-elongata_contig116953.1322.1 vs. uniprot

BLAST of mRNA_H-elongata_contig116953.1322.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A3L6V663_9STRA	3.930e-65	100.00	Histone H4 n=2 Tax=Stramenopiles TaxID=33634 RepID...	[more]
A0A024G0M5_9STRA	3.220e-64	100.00	Histone H4 n=40 Tax=Stramenopiles TaxID=33634 RepI...	[more]
UPI000528D6F7	4.020e-64	95.37	histone H4-like isoform X2 n=2 Tax=Euteleostomi Ta...	[more]
H4_SOLLC	4.570e-64	99.03	Histone H4 n=13 Tax=cellular organisms TaxID=13156...	[more]
G3UKU6_LOXAF	4.720e-64	98.08	Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=G3U...	[more]
A0A6G1SJU5_9ACAR	4.930e-64	95.37	Histone H4 (Fragment) n=1 Tax=Aceria tosichella Ta...	[more]
A0A0B6YRU8_9EUPU	5.030e-64	98.08	Histone H4 (Fragment) n=5 Tax=Bilateria TaxID=3321...	[more]
W5QFN7_SHEEP	5.710e-64	98.08	Histone H4 n=3 Tax=Bilateria TaxID=33213 RepID=W5Q...	[more]
UPI001F077499	5.990e-64	98.10	histone H4-like n=1 Tax=Hypomesus transpacificus T...	[more]
A0A2S2QRE4_9HEMI	7.150e-64	97.14	Histone H4 (Fragment) n=4 Tax=Hexapoda TaxID=6960 ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-elongata_contig116953	contig	H-elongata_contig116953:692..1021 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious	2021-02-24

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Seed ortholog score	198.7
Seed ortholog evalue	1.3e-48
Seed eggNOG ortholog	157072.XP_008863623.1
KEGG ko	ko:K11254
KEGG Pathway	ko05034,ko05203,ko05322,map05034,map05203,map05322
GOs	GO:0000228,GO:0000785,GO:0000786,GO:0000788,GO:0000790,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006996,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0031497,GO:0031974,GO:0031981,GO:0032991,GO:0032993,GO:0034622,GO:0034728,GO:0042393,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044815,GO:0051276,GO:0065003,GO:0065004,GO:0070013,GO:0071103,GO:0071824,GO:0071840,GO:0097159,GO:1901363
EggNOG free text desc.	protein heterodimerization activity
EggNOG OGs	COG2036@1,KOG3467@2759
COG Functional cat.	B
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko00001,ko03036
Hectar predicted targeting category	other localisation
Exons	1
Model size	330
Cds size	312
Stop	1
Start	1

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929679.98157-UTR-H-elongata_contig116953:691..709	1622929679.98157-UTR-H-elongata_contig116953:691..709	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig116953 692..709 +
1691679116.939232-UTR-H-elongata_contig116953:691..709	1691679116.939232-UTR-H-elongata_contig116953:691..709	Himanthalia elongata Himel1 dioecious	UTR	H-elongata_contig116953 692..709 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1622929680.0004792-CDS-H-elongata_contig116953:709..1021	1622929680.0004792-CDS-H-elongata_contig116953:709..1021	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig116953 710..1021 +
1691679116.9524124-CDS-H-elongata_contig116953:709..1021	1691679116.9524124-CDS-H-elongata_contig116953:709..1021	Himanthalia elongata Himel1 dioecious	CDS	H-elongata_contig116953 710..1021 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_H-elongata_contig116953.1322.1	prot_H-elongata_contig116953.1322.1	Himanthalia elongata Himel1 dioecious	polypeptide	H-elongata_contig116953 710..1021 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at H-elongata_contig116953:692..1021+
coding sequence from alignment at H-elongata_contig116953:692..1021+

protein sequence of mRNA_H-elongata_contig116953.1322.1

>prot_H-elongata_contig116953.1322.1 ID=prot_H-elongata_contig116953.1322.1|Name=mRNA_H-elongata_contig116953.1322.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=104bp
MSGRGKGGKGLGKGGAKRHRKVLRDNIQGITKPAIRRLARRGGVKRISGL
IYEETRGVLKVFLENVIRDSVTYTEHARRKTVTAMDVVYALKRQGRTLYG
FGG*

mRNA from alignment at H-elongata_contig116953:692..1021+

Legend: UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_H-elongata_contig116953.1322.1 ID=mRNA_H-elongata_contig116953.1322.1|Name=mRNA_H-elongata_contig116953.1322.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=330bp|location=Sequence derived from alignment at H-elongata_contig116953:692..1021+ (Himanthalia elongata Himel1 dioecious)
TCACAAACAAGAAGCAATATGTCTGGTCGCGGAAAAGGCGGTAAGGGTCT
GGGCAAGGGTGGCGCCAAGCGCCACCGCAAGGTACTTCGCGATAACATCC
AGGGTATCACGAAGCCTGCAATCCGCCGTTTGGCTCGCCGCGGTGGTGTG
AAGCGTATTTCTGGACTCATCTACGAGGAGACCCGTGGTGTGCTGAAGGT
GTTCCTCGAAAACGTCATTCGCGACTCAGTTACCTACACTGAACACGCTC
GCAGGAAGACTGTGACCGCCATGGACGTCGTATACGCTCTCAAGCGTCAG
GGCCGCACTCTTTACGGCTTTGGCGGCTAA

Coding sequence (CDS) from alignment at H-elongata_contig116953:692..1021+

>mRNA_H-elongata_contig116953.1322.1 ID=mRNA_H-elongata_contig116953.1322.1|Name=mRNA_H-elongata_contig116953.1322.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=624bp|location=Sequence derived from alignment at H-elongata_contig116953:692..1021+ (Himanthalia elongata Himel1 dioecious)
ATGTCTGGTCGCGGAAAAGGCGGTAAGGGTCTGGGCAAGGGTGGCGCCAA
GCGCCACCGCAAGGTACTTCGCGATAACATCCAGGGTATCACGAAGCCTG
CAATCCGCCGTTTGGCTCGCCGCGGTGGTGTGAAGCGTATTTCTGGACTC
ATCTACGAGGAGACCCGTGGTGTGCTGAAGGTGTTCCTCGAAAACGTCAT
TCGCGACTCAGTTACCTACACTGAACACGCTCGCAGGAAGACTGTGACCG
CCATGGACGTCGTATACGCTCTCAAGCGTCAGGGCCGCACTCTTTACGGC
TTTGGCGGCTAAATGTCTGGTCGCGGAAAAGGCGGTAAGGGTCTGGGCAA
GGGTGGCGCCAAGCGCCACCGCAAGGTACTTCGCGATAACATCCAGGGTA
TCACGAAGCCTGCAATCCGCCGTTTGGCTCGCCGCGGTGGTGTGAAGCGT
ATTTCTGGACTCATCTACGAGGAGACCCGTGGTGTGCTGAAGGTGTTCCT
CGAAAACGTCATTCGCGACTCAGTTACCTACACTGAACACGCTCGCAGGA
AGACTGTGACCGCCATGGACGTCGTATACGCTCTCAAGCGTCAGGGCCGC
ACTCTTTACGGCTTTGGCGGCTAA