mRNA_H-elongata_contig11685.1318.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE) HSP 1 Score: 177 bits (449), Expect = 1.880e-47 Identity = 91/234 (38.89%), Postives = 138/234 (58.97%), Query Frame = 1
Query: 13 IVTVPGIGRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRSE----SGNLY-SFVLDLSVDGYGAKK-------LAMNAVVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
+V VPG+G NLFSV A G+ ++F +N RLE + VP++ + +G + S + L + G + LA+ D +WHRR+GH++ +SLD+LR++ +GI + V DC C +GK HPK A + ++ PFQL + D +GPFTP A+G +KY ++ D++TKW V L+ K ++ +L+LF T+IP RI RADKG E+T +RQYCL+ I
Sbjct: 489 VVLVPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVETAD-LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGI 721
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE) HSP 1 Score: 176 bits (447), Expect = 3.700e-47 Identity = 90/234 (38.46%), Postives = 138/234 (58.97%), Query Frame = 1
Query: 13 IVTVPGIGRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRSE----SGNLY-SFVLDLSVDGYGAKK-------LAMNAVVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
++ VPG+G NLFSV A G+ ++F +N RLE + VP++ + +G + S + L + G + LA+ D +WHRR+GH++ +SLD+LR++ +GI + V DC C +GK HPK A + ++ PFQL + D +GPFTP A+G +KY ++ D++TKW V L+ K ++ +L+LF T+IP RI RADKG E+T +RQYCL+ I
Sbjct: 489 VMLVPGLGNNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLALRVETAD-LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGI 721
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE) HSP 1 Score: 173 bits (439), Expect = 4.350e-46 Identity = 89/231 (38.53%), Postives = 135/231 (58.44%), Query Frame = 1
Query: 22 VPGIGRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRSE----SGNLY-SFVLDLSVDGYGAKK-------LAMNAVVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
VPG+G NLFSV A G+ ++F +N RLE + VP++ + +G + S + L + G + L + D +WHRR+GH++ +SLD+LR++ +GI + V DC C +GK HPK A + ++ PFQL + D +GPFTP A+G +KY ++ D++TKW V L+ K ++ +L+LF T+IP RI RADKG E+T +RQYCL+ I
Sbjct: 614 VPGLGTNLFSVTAALSNGVASLFYPDNPRLESADAVVPMKIQGVDNTGKITCSITIKLGAENGGRQTPGETPDGLPLRVETAD-LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDKTCSIDALELFNKGTVIPRSARIHVLRADKGTEFTNAAYRQYCLDVGI 843
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE) HSP 1 Score: 162 bits (410), Expect = 2.510e-42 Identity = 88/228 (38.60%), Postives = 127/228 (55.70%), Query Frame = 1
Query: 34 GRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRS------ESGNLYSFVLDL-------SVDGYGAKKLAMNAVVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
G NLFSV A KG+ T+F +N RLE +V P+++ +YS + L +V G LA+ V + +WHRR+GH++ +SLD+LRK G+ + V+DC VC +GK HPK + + RPFQ D +GPFTP A+G +KY ++ D+ TKW + L+ + ++ SL LF T++P G RI R D G E+T EFRQYC + I
Sbjct: 208 GTNLFSVTLAMLKGVETLFHPDNPRLESGDVVFPMQTLGVDATTGKRIYSIEVKLGGEPGGPTVLGDAPDALALK-VESADLWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMKDQACSVDSLALFKKGTVVPTGERIHCLRGDPGTEFTSAEFRQYCQDIGI 434
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE) HSP 1 Score: 153 bits (386), Expect = 3.720e-40 Identity = 77/178 (43.26%), Postives = 108/178 (60.67%), Query Frame = 1
Query: 145 ESGNLYSFVLDLSVDGYGAKKLAMNAVVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
E LY F +DL G +A+ V + +WHRR+GH+H +SLDILRK G G+ + +S C VCAVG + +HPK A++ +RPFQL DLMGPF+P A+G + Y+ + D++ KW V+L+ K + +LQLF S + P R+ RADKGGEYT F +YC + I
Sbjct: 239 ECDELYHFTMDLPETGE-ISGVAL-PVKSAALWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSATVDALQLFNQSVLTPHELRLECVRADKGGEYTSWAFCKYCRDVGI 414
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KVF6_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVF6_9PHAE) HSP 1 Score: 149 bits (375), Expect = 6.140e-38 Identity = 89/240 (37.08%), Postives = 124/240 (51.67%), Query Frame = 1
Query: 22 VPGIGRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRSESGNLYSFVLDLS----VDGYGAKKLA----------MNAV----VNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAI---GDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
VPG+GRN+FS + K+G+ + + L +PL + + LD++ V G K L NAV V+ WHRRLGHL+A+SLDILRK GT + + +++S CGVC + K + HPK + +++RP QL D MGP P A G + Y ++TD+YTK VYLL K +++ + G RI R DKGGE TG EFR YC + I
Sbjct: 278 VPGLGRNIFSPTSLLKRGLRCVGEKSTPHLTIQGKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTEVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKVTDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAI 517
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KY84_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY84_9PHAE) HSP 1 Score: 149 bits (377), Expect = 8.580e-38 Identity = 89/237 (37.55%), Postives = 125/237 (52.74%), Query Frame = 1
Query: 22 VPGIGRNLFSVITAAKKGIVTIFDFENFRLE-------GFNVTVPLRSESGNLYSFVLDLSVDGYGAKKLA------MNAVVNDQV----------WHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYC 663
VPG+GR+LFS TA KKG TI + R+E G + + LR E G LY LD+ +D ++ MN N V WHRRL H H ++ + TG+ + + C C + K HPKTA H +P Q Y DL+GP +P A G + YVS+ TDEY++ VYL+ TKD+A+ +L+ F+ +IP G R+ R R+D GGEYT E + ++C
Sbjct: 379 VPGLGRHLFSTGTAQKKGANTIMS-DQPRIELPATSRDGSTIALVLR-EVGTLY--FLDVRLDTNQCERRRRITEENMNTYENSYVAAPRAEPYNLWHRRLAHCHKGIIEAAARIKETGVKLTDNLDPCETCKLQKSTQRKHPKTAKHTAVQPCQRVYTDLLGPISPPAKGGFNYVSKFTDEYSRMNVVYLIRTKDEAIDTLERFIDDIVIPNGFRLERLRSDCGGEYTAEYYTKFC 611
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KT84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KT84_9PHAE) HSP 1 Score: 147 bits (372), Expect = 2.250e-37 Identity = 94/251 (37.45%), Postives = 126/251 (50.20%), Query Frame = 1
Query: 22 VPGIGRNLFSVITAA-----------KKGIVTIFDFENFRLEGFNVTVPLRSESGNLYSFVLDLS----VDGYGAKKLA----------MNAV----VNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAI---GDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
VPG+GRN+FS T KKG+ + + L + +PL + + LD++ V G K L NAV V+ WHRRLGHL+A+SLDILRK GTG+ + +++S CGVC + K + HPK + +I+RP QL D MGP P A G + Y +ITD+YTK VYLL K +++ + G RI R DKGGE TG EFR YC + I
Sbjct: 319 VPGLGRNIFSSRTLLLGMDFSPTSLLKKGLRCVVEESTPHLTIQDKVIPLTQDPRDQGMCTLDITFEQNVQPSGTKSLVPHQKQSQTHTANAVCFTLVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTREISRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAI 569
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE) HSP 1 Score: 147 bits (370), Expect = 7.360e-37 Identity = 68/152 (44.74%), Postives = 94/152 (61.84%), Query Frame = 1
Query: 223 VVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAIGDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
V + +WHRR+GH++++SLDILRK G+ E V DCG CA+GK HPK A + + RPFQL + D +GPFTP A+G +KY ++ D+ TKW + L+ K ++ SL LF T++P G I R D G E+T EFRQY + I
Sbjct: 523 VESANLWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDKTCSVDSLALFNKGTVVPTGEGIHCLRGDHGTEFTSAEFRQYYQDIGI 674
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Match: A0A6H5KZ34_9PHAE (Integrase catalytic domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ34_9PHAE) HSP 1 Score: 137 bits (344), Expect = 2.140e-36 Identity = 69/155 (44.52%), Postives = 92/155 (59.35%), Query Frame = 1
Query: 223 VVNDQVWHRRLGHLHAQSLDILRKRYGTGITFEEAVSDCGVCAVGKDQHISHPKTANHKINRPFQLCYGDLMGPFTPVAI---GDYKYVSEITDEYTKWTAVYLLTTKDQALQSLQLFVGSTIIPFGGRIVRWRADKGGEYTGEEFRQYCLETDI 678
+V+ WHRRLGHL+A+SLDILRK GTG+ + +++S CGVC + K + HPK + +++RP QL D MGP P A G + Y +ITD+YTK VYLL K +++ + G RI R DKGGE TG EFR YC + I
Sbjct: 39 LVSADTWHRRLGHLNARSLDILRKDTGTGVDYRDSLSPCGVCQIAKHKQSPHPKQSTRELSRPGQLVVIDNMGPVNPPAKYKGGSFPYACKITDDYTKMKEVYLLRKKSDTTEAVHTYNMCVAAAGGYRIETIRCDKGGENTGSEFRDYCKNSAI 193 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11685.1318.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11685.1318.1 >prot_H-elongata_contig11685.1318.1 ID=prot_H-elongata_contig11685.1318.1|Name=mRNA_H-elongata_contig11685.1318.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=226bp VWIDIVTVPGIGRNLFSVITAAKKGIVTIFDFENFRLEGFNVTVPLRSESback to top mRNA from alignment at H-elongata_contig11685:8123..8800+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11685.1318.1 ID=mRNA_H-elongata_contig11685.1318.1|Name=mRNA_H-elongata_contig11685.1318.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=678bp|location=Sequence derived from alignment at H-elongata_contig11685:8123..8800+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11685:8123..8800+ >mRNA_H-elongata_contig11685.1318.1 ID=mRNA_H-elongata_contig11685.1318.1|Name=mRNA_H-elongata_contig11685.1318.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1356bp|location=Sequence derived from alignment at H-elongata_contig11685:8123..8800+ (Himanthalia elongata Himel1 dioecious)back to top |