mRNA_H-elongata_contig11684.1316.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11684.1316.1
Unique NamemRNA_H-elongata_contig11684.1316.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11684.1316.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11684contigH-elongata_contig11684:5212..6000 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size318
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11684.1316.1prot_H-elongata_contig11684.1316.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11684 5215..6000 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929679.475151-UTR-H-elongata_contig11684:5211..52141622929679.475151-UTR-H-elongata_contig11684:5211..5214Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11684 5212..5214 +
1691679116.761757-UTR-H-elongata_contig11684:5211..52141691679116.761757-UTR-H-elongata_contig11684:5211..5214Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11684 5212..5214 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929679.5016632-CDS-H-elongata_contig11684:5214..53511622929679.5016632-CDS-H-elongata_contig11684:5214..5351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11684 5215..5351 +
1691679116.7701478-CDS-H-elongata_contig11684:5214..53511691679116.7701478-CDS-H-elongata_contig11684:5214..5351Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11684 5215..5351 +
1622929679.5280213-CDS-H-elongata_contig11684:5822..60001622929679.5280213-CDS-H-elongata_contig11684:5822..6000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11684 5823..6000 +
1691679116.7801774-CDS-H-elongata_contig11684:5822..60001691679116.7801774-CDS-H-elongata_contig11684:5822..6000Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11684 5823..6000 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11684.1316.1

>prot_H-elongata_contig11684.1316.1 ID=prot_H-elongata_contig11684.1316.1|Name=mRNA_H-elongata_contig11684.1316.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=105bp
MRPSAAPIEVRQGGYPRRIISRLGVRETYSRVLEGLHSGDYARGSGVAKR
CRVHRALGGATGPPGLEHFSTRWLLRWSLEQQGSSCAFPQKAPFAGKLCE
DLPS*
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mRNA from alignment at H-elongata_contig11684:5212..6000+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11684.1316.1 ID=mRNA_H-elongata_contig11684.1316.1|Name=mRNA_H-elongata_contig11684.1316.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=789bp|location=Sequence derived from alignment at H-elongata_contig11684:5212..6000+ (Himanthalia elongata Himel1 dioecious)
GACATGCGACCTTCTGCTGCACCTATCGAGGTACGTCAGGGAGGCTATCC
GAGACGAATCATCTCCCGGCTTGGTGTACGAGAAACTTACTCAAGGGTAC
TGGAGGGACTACATTCGGGAGACTATGCTAGAGGCAGCGGGTGCGAATAA
TGTAGCAAGCGAGCAAGCAACTATCCGCCCTCTCCGAACGCAAACAGATT
CACAAGTGACTTGGTGGCTAAAGTACCAAAGGATCTGGACGCATGAATGA
CCTTATTTTTAGATGAGGGAAAGAGCGGGGTGTTCTTACCCTAAGACGCG
AGAAACCGATCACTGCATGGATCCTCGACATGTCTCCCTTAAGAAGCATA
TATACCGTCATGAGCCGGTATCTAATCAGGGTGGTGTTCAATCATAGTAC
CTTCAATAATTCAGTATCATTTTAAAATCTCGGGAGCGGTCAACGCTGGT
ATCGATGTTATTGATGGAAGGGGGAGCACGAGGTAACGTCAGGGGATAGT
CGTTGTCCTAGCGATGACCACATCGACGGTGGTGCGATATCAAAGTGCGA
ACCCTATGAACCCCTCTCTTTTCCCTTAACGTCCACTGCCTTCATTTTCT
ATCTATCATAGGGTTGCCAAACGATGCCGAGTACATCGAGCACTCGGTGG
AGCCACTGGACCCCCCGGGTTGGAACACTTTTCGACGCGTTGGTTGCTTC
GCTGGTCGCTCGAACAACAAGGAAGTAGTTGTGCTTTCCCACAAAAGGCA
CCATTCGCCGGAAAGCTGTGCGAAGATCTGCCGAGCTAA
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Coding sequence (CDS) from alignment at H-elongata_contig11684:5212..6000+

>mRNA_H-elongata_contig11684.1316.1 ID=mRNA_H-elongata_contig11684.1316.1|Name=mRNA_H-elongata_contig11684.1316.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=630bp|location=Sequence derived from alignment at H-elongata_contig11684:5212..6000+ (Himanthalia elongata Himel1 dioecious)
ATGCGACCTTCTGCTGCACCTATCGAGGTACGTCAGGGAGGCTATCCGAG
ACGAATCATCTCCCGGCTTGGTGTACGAGAAACTTACTCAAGGGTACTGG
AGGGACTACATTCGGGAGACTATGCTAGAGGCAGCGGATGCGACCTTCTG
CTGCACCTATCGAGGTACGTCAGGGAGGCTATCCGAGACGAATCATCTCC
CGGCTTGGTGTACGAGAAACTTACTCAAGGGTACTGGAGGGACTACATTC
GGGAGACTATGCTAGAGGCAGCGGGGTTGCCAAACGATGCCGAGTACATC
GAGCACTCGGTGGAGCCACTGGACCCCCCGGGTTGGAACACTTTTCGACG
CGTTGGTTGCTTCGCTGGTCGCTCGAACAACAAGGAAGTAGTTGTGCTTT
CCCACAAAAGGCACCATTCGCCGGAAAGCTGTGCGAAGATCTGCCGAGCT
AAGGTTGCCAAACGATGCCGAGTACATCGAGCACTCGGTGGAGCCACTGG
ACCCCCCGGGTTGGAACACTTTTCGACGCGTTGGTTGCTTCGCTGGTCGC
TCGAACAACAAGGAAGTAGTTGTGCTTTCCCACAAAAGGCACCATTCGCC
GGAAAGCTGTGCGAAGATCTGCCGAGCTAA
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