mRNA_H-elongata_contig116795.1314.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116795.1314.1
Unique NamemRNA_H-elongata_contig116795.1314.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig116795.1314.1 vs. uniprot
Match: D8LPY1_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPY1_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 9.910e-26
Identity = 54/91 (59.34%), Postives = 69/91 (75.82%), Query Frame = 1 
Query:    1 VLRKNTLWVMENGGLSSGMRIREVLLSADFTCGFVSPVVLTSDMFDSPTTAMRKGNSFYVVQAKFTVPAEEKATTAYEIIRVDRDAGEFNC 273
            VLRKNTLWV++N    +  +I EV L+AD +CG ++P  L++ +FD+ TTAMRKGNS Y V AKF V AE+ ATTAYEI+RVDRD+GE  C
Sbjct:  227 VLRKNTLWVVDN----ALEQILEVSLAADLSCGSLAPRALSNPLFDTQTTAMRKGNSLYAVNAKFGVAAEDVATTAYEIVRVDRDSGELVC 313
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BLAST of mRNA_H-elongata_contig116795.1314.1 vs. uniprot
Match: D7FN98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN98_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 2.910e-24
Identity = 54/91 (59.34%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 VLRKNTLWVMENGGLSSGMRIREVLLSADFTCGFVSPVVLTSDMFDSPTTAMRKGNSFYVVQAKFTVPAEEKATTAYEIIRVDRDAGEFNC 273
            VLRKNTLWV+      SG  I EV LSAD +CG V+   L+  MFD+ TTAMRKGNS Y V AKF V  E+  T AYEI+RVDRD+GE  C
Sbjct:  138 VLRKNTLWVVH----PSGGEILEVSLSADLSCGSVARRALSHPMFDTQTTAMRKGNSLYAVNAKFGVAEEDVDTAAYEIVRVDRDSGELAC 224
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BLAST of mRNA_H-elongata_contig116795.1314.1 vs. uniprot
Match: D7FZ69_ECTSI (Superoxide dismutase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ69_ECTSI)

HSP 1 Score: 98.6 bits (244), Expect = 1.160e-22
Identity = 53/91 (58.24%), Postives = 62/91 (68.13%), Query Frame = 1 
Query:    1 VLRKNTLWVMENGGLSSGMRIREVLLSADFTCGFVSPVVLTSDMFDSPTTAMRKGNSFYVVQAKFTVPAEEKATTAYEIIRVDRDAGEFNC 273
            VLRKNTLWV +N       +I EV LSAD +CG V+   L++ +FD  TTAMRKGNS Y V AK  V  E+ ATTAYEI+RVDRD GE  C
Sbjct:  247 VLRKNTLWVSDN----VLEQIYEVSLSADLSCGSVATRTLSNPLFDRQTTAMRKGNSLYAVNAKLDVAEEDIATTAYEIVRVDRDGGELAC 333
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BLAST of mRNA_H-elongata_contig116795.1314.1 vs. uniprot
Match: A0A6H5JGY3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGY3_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 8.240e-20
Identity = 41/68 (60.29%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:   70 VLLSADFTCGFVSPVVLTSDMFDSPTTAMRKGNSFYVVQAKFTVPAEEKATTAYEIIRVDRDAGEFNC 273
            V L+A+ +CG ++P  L++ +FD+ TTAMRKGNS Y V AKF V AE+ ATTAYEI+RVDRD+GE  C
Sbjct:   93 VSLAANLSCGSLAPRALSNPLFDTQTTAMRKGNSLYAVNAKFGVAAEDVATTAYEIVRVDRDSGELAC 160
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BLAST of mRNA_H-elongata_contig116795.1314.1 vs. uniprot
Match: A0A6H5KWQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWQ6_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 1.200e-17
Identity = 42/81 (51.85%), Postives = 57/81 (70.37%), Query Frame = 1 
Query:   43 LSSGMRIREVLLSADFTCGFVSPVVLTSDMFDSPTTAMRKGNSFYVVQAKFTVPAEEKATTAYEIIRVDRDAGEF---NCT 276
            L    RI EV L+A+ +CG ++P  L++ + D+ TT+MRKGNS Y V A F V AE+ ATTAY+I+RVD+D+GE    NCT
Sbjct:   92 LLDAARILEVPLAANLSCGSLAPRALSNPLLDTQTTSMRKGNSLYAVNANFGVAAEDVATTAYKIVRVDQDSGESWRANCT 172
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BLAST of mRNA_H-elongata_contig116795.1314.1 vs. uniprot
Match: A0A1I7D2V8_9ACTN (Uncharacterized protein n=1 Tax=Geodermatophilus amargosae TaxID=1296565 RepID=A0A1I7D2V8_9ACTN)

HSP 1 Score: 50.8 bits (120), Expect = 2.990e-5
Identity = 34/83 (40.96%), Postives = 42/83 (50.60%), Query Frame = 1 
Query:    1 VLRKNTLWVMENGGLSSGMRIREVLLSADFTCGFVSPVVLTSDMFDSPTTAMRKGNSFYVVQAKFTVPAEEKATTAYEIIRVD 249
            VL    LW ++N       R+ EV LS D T G V  V+ TSD+F  PTTA+R      VV AKF       A   YE++ VD
Sbjct:  243 VLHGRRLWAVQNSN-----RVTEVRLSRDLTSGTVREVI-TSDLFQVPTTAIRHDGELAVVNAKFDTGIPPTADQ-YEVVVVD 318
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BLAST of mRNA_H-elongata_contig116795.1314.1 vs. uniprot
Match: A0A521DSI2_9ACTN (Uncharacterized protein n=1 Tax=Geodermatophilus aquaeductus TaxID=1564161 RepID=A0A521DSI2_9ACTN)

HSP 1 Score: 49.7 bits (117), Expect = 7.930e-5
Identity = 34/82 (41.46%), Postives = 43/82 (52.44%), Query Frame = 1 
Query:    1 VLRKNTLWVMENGGLSSGMRIREVLLSADFTCGFVSPVVLTSDMFDSPTTAMRKGNSFYVVQAKFTVPAEEKATTAYEIIRV 246
            VL  + LW ++N       R+ EV LSAD T G V  V+ TSD+F  PTTA+R      VV AKF       A   YE++ V
Sbjct:  302 VLDHDRLWAVQNSD-----RVTEVRLSADLTAGRVEEVI-TSDLFQVPTTAIRYEGRLAVVNAKFDTGIPPTADE-YEVVLV 376
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116795.1314.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D8LPY1_ECTSI9.910e-2659.34Superoxide dismutase n=1 Tax=Ectocarpus siliculosu... [more]
D7FN98_ECTSI2.910e-2459.34Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZ69_ECTSI1.160e-2258.24Superoxide dismutase n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5JGY3_9PHAE8.240e-2060.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KWQ6_9PHAE1.200e-1751.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1I7D2V8_9ACTN2.990e-540.96Uncharacterized protein n=1 Tax=Geodermatophilus a... [more]
A0A521DSI2_9ACTN7.930e-541.46Uncharacterized protein n=1 Tax=Geodermatophilus a... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116795contigH-elongata_contig116795:174..876 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.8
Seed ortholog evalue8.3e-17
Seed eggNOG ortholog2880.D8LPY1
EggNOG OGs2D5U8@1,2SZPX@2759
Ec32 ortholog descriptionSix-bladed beta-propeller, TolB-like
Ec32 orthologEc-15_001700.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size285
Cds size258
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116795.1314.1prot_H-elongata_contig116795.1314.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116795 201..876 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929679.3336377-UTR-H-elongata_contig116795:173..2001622929679.3336377-UTR-H-elongata_contig116795:173..200Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116795 174..200 +
1691679116.6958692-UTR-H-elongata_contig116795:173..2001691679116.6958692-UTR-H-elongata_contig116795:173..200Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116795 174..200 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929679.3471212-CDS-H-elongata_contig116795:200..2421622929679.3471212-CDS-H-elongata_contig116795:200..242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116795 201..242 +
1691679116.7150455-CDS-H-elongata_contig116795:200..2421691679116.7150455-CDS-H-elongata_contig116795:200..242Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116795 201..242 +
1622929679.3581905-CDS-H-elongata_contig116795:660..8761622929679.3581905-CDS-H-elongata_contig116795:660..876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116795 661..876 +
1691679116.7250786-CDS-H-elongata_contig116795:660..8761691679116.7250786-CDS-H-elongata_contig116795:660..876Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116795 661..876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116795.1314.1

>prot_H-elongata_contig116795.1314.1 ID=prot_H-elongata_contig116795.1314.1|Name=mRNA_H-elongata_contig116795.1314.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=86bp
MENGGLSSGMRIREVLLSADFTCGFVSPVVLTSDMFDSPTTAMRKGNSFY
VVQAKFTVPAEEKATTAYEIIRVDRDAGEFNCTAM*
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mRNA from alignment at H-elongata_contig116795:174..876+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116795.1314.1 ID=mRNA_H-elongata_contig116795.1314.1|Name=mRNA_H-elongata_contig116795.1314.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=703bp|location=Sequence derived from alignment at H-elongata_contig116795:174..876+ (Himanthalia elongata Himel1 dioecious)
GTTCTGCGAAAAAACACCCTATGGGTCATGGAGAACGGGGGTTTAAGCTC
AGGGATGCGAATTCGCGAGGTGATGAAGTGAAAGGACCTGTGGGAGTTAC
AAAATAATGTACTGCGTGGAGTTATATGATAGGCAGGCAACAAATTACAC
CTAAAAATATAGTTCAGGAAATATAAGTATATCCCTTTGTGTGGATCTAG
TCGCAGTAGAAAAGAAATAGTAGCCTTGTTTCTTGTGTGAAGCGCATCTT
TGGGGAGGCTTGATTAAAGGCAAAACTCCGTCCTACGTGGGACTTGATTC
ATTATGGTTAGCCACGTCGTATTGGCAACTGAAAACGTGTATAAATACTA
ATGCAAAGTTAAGATGTAGCACTAGATTTGCGTTTTTGACTCCTGCTAAA
GCTTTGGACTCACCCCAGCCCACATCTCATCGTATGGTGCACCCCCCACC
ATGCACATTATACGTACAACTGCCTCGACATTTTCAGGTGTTGCTCTCAG
CCGATTTTACTTGCGGGTTCGTGTCCCCCGTTGTTCTCACGAGCGATATG
TTCGACAGCCCCACGACTGCGATGCGCAAGGGTAACTCTTTTTACGTGGT
GCAGGCTAAGTTCACAGTCCCAGCCGAGGAGAAGGCAACCACAGCGTACG
AGATTATCCGCGTAGACCGCGATGCGGGAGAGTTCAACTGCACGGCGATG
TAA
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Coding sequence (CDS) from alignment at H-elongata_contig116795:174..876+

>mRNA_H-elongata_contig116795.1314.1 ID=mRNA_H-elongata_contig116795.1314.1|Name=mRNA_H-elongata_contig116795.1314.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=516bp|location=Sequence derived from alignment at H-elongata_contig116795:174..876+ (Himanthalia elongata Himel1 dioecious)
ATGGAGAACGGGGGTTTAAGCTCAGGGATGCGAATTCGCGAGATGGAGAA
CGGGGGTTTAAGCTCAGGGATGCGAATTCGCGAGGTGTTGCTCTCAGCCG
ATTTTACTTGCGGGTTCGTGTCCCCCGTTGTTCTCACGAGCGATATGTTC
GACAGCCCCACGACTGCGATGCGCAAGGGTAACTCTTTTTACGTGGTGCA
GGCTAAGTTCACAGTCCCAGCCGAGGAGAAGGCAACCACAGCGTACGAGA
TTATCCGCGTAGACCGCGATGCGGGAGAGTTCAACTGCACGGCGATGTAA
GTGTTGCTCTCAGCCGATTTTACTTGCGGGTTCGTGTCCCCCGTTGTTCT
CACGAGCGATATGTTCGACAGCCCCACGACTGCGATGCGCAAGGGTAACT
CTTTTTACGTGGTGCAGGCTAAGTTCACAGTCCCAGCCGAGGAGAAGGCA
ACCACAGCGTACGAGATTATCCGCGTAGACCGCGATGCGGGAGAGTTCAA
CTGCACGGCGATGTAA
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