mRNA_H-elongata_contig116691.1311.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig116691.1311.1 vs. uniprot
Match: D8LCU0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU0_ECTSI) HSP 1 Score: 218 bits (556), Expect = 2.450e-70 Identity = 110/164 (67.07%), Postives = 132/164 (80.49%), Query Frame = 1
Query: 1 QLLRADGWS-GDGGGANTAVHIFEYDRRFDQAYPGSFVYYDYNEPRGVPDELRGSMDFILMDPPYLNAECVGKFLETADALARHPRQAVA-DGEGQVSSTATSASATMMMFITSPLNEAFMREEAGMRRIRFRLAFESKFATPMSLYTNYASEALGGWVAAAEE 486
+LL++DGW+ G GGGA V+IFEYDRRFDQAYP SFVYYD+NEP VPD+LRGS+D+ILMDPPYLN EC+GKFLETAD +AR PR AVA DG+G+ + T MMFITSPLN A++RE G+RR ++LAF+SKFATPMSLYTNY S+ALGGWV E+
Sbjct: 5 KLLKSDGWTCGAGGGAT--VYIFEYDRRFDQAYPESFVYYDFNEPLAVPDDLRGSVDYILMDPPYLNPECIGKFLETADVIARRPRAAVAGDGDGKEEAAPP---VTPMMFITSPLNHAYLRENMGLRRTPYQLAFKSKFATPMSLYTNYPSDALGGWVEEEED 163
BLAST of mRNA_H-elongata_contig116691.1311.1 vs. uniprot
Match: W2PIG9_PHYPN (Uncharacterized protein n=16 Tax=Phytophthora TaxID=4783 RepID=W2PIG9_PHYPN) HSP 1 Score: 101 bits (252), Expect = 1.440e-23 Identity = 54/136 (39.71%), Postives = 76/136 (55.88%), Query Frame = 1
Query: 55 VHIFEYDRRFDQAYPGSFVYYDYNEPRGVPDELRGSMDFILMDPPYLNAECVGKFLETADALARHPRQAVADGEGQVSSTATSASATMMMFITSPLNEAFMREEAGMRRIRFRLAFESKFATPMSLYTNYASEALG 462
V +FEYDRRFD+ Y G FV+Y+YNEP +PD+ D++L+DPPYLN C+GKF ET LA+ ++V + ++ + T FIT+ + + + G F FESK + YTNY SE G
Sbjct: 92 VFLFEYDRRFDEKYSGHFVFYNYNEPTNLPDKFHHFFDYVLVDPPYLNTNCMGKFAETMRWLAKDV-ESVPGKKAKILTPCT--------FITARMLRKDIYADLGFTPSGFTPTFESKLSNQFLTYTNYRSERFG 218
BLAST of mRNA_H-elongata_contig116691.1311.1 vs. uniprot
Match: A0A3R7K1S2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7K1S2_9STRA) HSP 1 Score: 94.7 bits (234), Expect = 6.750e-21 Identity = 52/136 (38.24%), Postives = 73/136 (53.68%), Query Frame = 1
Query: 55 VHIFEYDRRFDQAYPGSFVYYDYNEPRGVPDELRGSMDFILMDPPYLNAECVGKFLETADALARHPRQAVADGEGQVSSTATSASATMMMFITSPLNEAFMREEAGMRRIRFRLAFESKFATPMSLYTNYASEALG 462
V +FE+DRRFD+ Y FV+YDYN P +P++ D++L+DPPYLN C+GKF ET L+R +AV ++ + T FIT+ + + + G F FESK + YTNY SE G
Sbjct: 92 VFLFEFDRRFDEKYGDHFVFYDYNTPTELPEKFHHFFDYVLVDPPYLNPNCMGKFAETMRWLSRDV-EAVTGQNDKILNPCT--------FITARMLRKNIYADLGFTPSGFYPTFESKLSNQFLTYTNYRSECFG 218
BLAST of mRNA_H-elongata_contig116691.1311.1 vs. uniprot
Match: A0A024UFC1_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UFC1_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 1.100e-19 Identity = 48/136 (35.29%), Postives = 70/136 (51.47%), Query Frame = 1
Query: 55 VHIFEYDRRFDQAYPGSFVYYDYNEPRGVPDELRGSMDFILMDPPYLNAECVGKFLETADALARHPRQAVADGEGQVSSTATSASATMMMFITSPLNEAFMREEAGMRRIRFRLAFESKFATPMSLYTNYASEALG 462
V++FEYD RF++ YP FV+YDYN P + + + D++L+DPPYLN C+ KF +T L++ GQ+ T FIT+ + + + G F F+SK + YTNYASE G
Sbjct: 85 VYLFEYDHRFEEKYPTEFVFYDYNTPLALDSKFQHFFDYVLVDPPYLNINCMSKFAQTMRFLSKD-----VSARGQIQ--------TPNAFITAHMLRKDIAADLGFTPTGFVPTFDSKLSNRFLTYTNYASERFG 207
BLAST of mRNA_H-elongata_contig116691.1311.1 vs. uniprot
Match: W4G0W0_9STRA (Uncharacterized protein n=4 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G0W0_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 1.540e-19 Identity = 47/136 (34.56%), Postives = 69/136 (50.74%), Query Frame = 1
Query: 55 VHIFEYDRRFDQAYPGSFVYYDYNEPRGVPDELRGSMDFILMDPPYLNAECVGKFLETADALARHPRQAVADGEGQVSSTATSASATMMMFITSPLNEAFMREEAGMRRIRFRLAFESKFATPMSLYTNYASEALG 462
V++FEYD RF++ YP FV+YDYN P + + D++L+DPPYLN C+ KF +T L++H +GQ+ T FIT+ + + + G F F+SK + YTNY S G
Sbjct: 85 VYLFEYDPRFEEKYPSEFVFYDYNTPLAINSKFEHFFDYVLVDPPYLNTNCMSKFAQTMRFLSKHVTT-----QGQIQ--------TPNAFITAQMLRKDIFHDLGFTPCGFVPTFDSKLSNRFLTYTNYTSTRFG 207
BLAST of mRNA_H-elongata_contig116691.1311.1 vs. uniprot
Match: A0A1V9ZB50_9STRA (N(6)-adenine-specific DNA methyltransferase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZB50_9STRA) HSP 1 Score: 90.1 bits (222), Expect = 3.300e-19 Identity = 51/136 (37.50%), Postives = 68/136 (50.00%), Query Frame = 1
Query: 55 VHIFEYDRRFDQAYPGSFVYYDYNEPRGVPDELRGSMDFILMDPPYLNAECVGKFLETADALARHPRQAVADGEGQVSSTATSASATMMMFITSPLNEAFMREEAGMRRIRFRLAFESKFATPMSLYTNYASEALG 462
V++FEYD RF YP F +YDYN P V + D++L+DPPYLN C+ KF ET L+++ DG + T + FIT+ + M +E G F FESK + YTNY SE G
Sbjct: 85 VYLFEYDYRFQDKYPDEFAFYDYNSPLEVDAKFHHFFDYVLVDPPYLNTNCMSKFAETMRLLSKNVD--AKDGAKGIIRTPNA-------FITASVLRKDMFKELGFTPTGFVPTFESKLSNHFLTYTNYTSERFG 211
BLAST of mRNA_H-elongata_contig116691.1311.1 vs. uniprot
Match: A0A067CM46_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CM46_SAPPC) HSP 1 Score: 89.7 bits (221), Expect = 4.730e-19 Identity = 49/136 (36.03%), Postives = 68/136 (50.00%), Query Frame = 1
Query: 55 VHIFEYDRRFDQAYPGSFVYYDYNEPRGVPDELRGSMDFILMDPPYLNAECVGKFLETADALARHPRQAVADGEGQVSSTATSASATMMMFITSPLNEAFMREEAGMRRIRFRLAFESKFATPMSLYTNYASEALG 462
V +FEYD RF YP F +YDYN P V + D++L+DPPYLN C+ KF +T L++ + DG V T + FIT+ + M+++ G F FESK + YTNY S+ G
Sbjct: 85 VFLFEYDHRFQDKYPDEFAFYDYNSPLDVDAKFHHFFDYVLVDPPYLNTNCMSKFADTMRLLSKKTEKR--DGAKDVILTPNA-------FITASILRKDMKKDLGFTPSGFVPTFESKLSNHFLTYTNYTSKRFG 211
BLAST of mRNA_H-elongata_contig116691.1311.1 vs. uniprot
Match: A0A6G0WNY0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNY0_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 6.000e-19 Identity = 47/136 (34.56%), Postives = 70/136 (51.47%), Query Frame = 1
Query: 55 VHIFEYDRRFDQAYPGSFVYYDYNEPRGVPDELRGSMDFILMDPPYLNAECVGKFLETADALARHPRQAVADGEGQVSSTATSASATMMMFITSPLNEAFMREEAGMRRIRFRLAFESKFATPMSLYTNYASEALG 462
V++FEYD RF++ YP FV+YDYN P + + ++L+DPPYLN C+ KF +T L++ D +G++ T FIT+ + + ++ G F FESK + YTNY SE G
Sbjct: 85 VYLFEYDHRFEEKYPMEFVFYDYNTPLEIDAKFHHFFSYVLVDPPYLNVNCMSKFAQTMRWLSKD-----VDSQGRIQ--------TPNAFITAQMLRKDIYKDLGFTPSGFIPTFESKLSNQFLTYTNYTSERFG 207
BLAST of mRNA_H-elongata_contig116691.1311.1 vs. uniprot
Match: A0A6A5A3T1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5A3T1_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 8.740e-18 Identity = 46/144 (31.94%), Postives = 73/144 (50.69%), Query Frame = 1
Query: 55 VHIFEYDRRFDQAYPGSFVYYDYNEPRGVPDELRGSMDFILMDPPYLNAECVGKFLETADALARHPRQAVADGEGQVSSTATSASATMM--------MFITSPLNEAFMREEAGMRRIRFRLAFESKFATPMSLYTNYASEALG 462
V++FEYD RF++ YP FV+YDYN P + + D++L+DPPYLN C+ KF +T L++H +GQ+ + +A T++ M + + + + + G F F+SK + YTNY S G
Sbjct: 8 VYLFEYDPRFEEKYPSEFVFYDYNTPLAIDSKFEHFFDYVLVDPPYLNTNCMSKFAQTMRFLSKHVTT-----QGQIQTP--NAFITVLDNFGYDDEMCVLAQMLRKDIFHDLGFTPCGFVPTFDSKLSNRFLTYTNYTSTRFG 144
BLAST of mRNA_H-elongata_contig116691.1311.1 vs. uniprot
Match: A0A3M6VAP0_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VAP0_9STRA) HSP 1 Score: 89.4 bits (220), Expect = 9.540e-18 Identity = 47/139 (33.81%), Postives = 73/139 (52.52%), Query Frame = 1
Query: 55 VHIFEYDRRFDQAYPGSFVYYDYNEPRGVPDELRGSMDFILMDPPYLNAECVGKFLETADALARHPRQAVADGEGQVSSTATSASATMMMFITSPLNEAFMRE---EAGMRRIRFRLAFESKFATPMSLYTNYASEALG 462
V++FEYDRRF + Y FV+YDYNEP +P++ D++L+DPPYLN C+ KF ET L + + V + ++ + T + T F++ + ++ + F FESK + YTNY S+ G
Sbjct: 331 VYLFEYDRRFGEKYNDHFVFYDYNEPTNLPEKFHRFFDYVLVDPPYLNINCMSKFAETMRWLVKDV-EVVPGSKHKILNPCTFITGTDKAFLSDFRSRMLRKDIFADLNFTPSGFTPTFESKLSNQFLTYTNYVSDRFG 468 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116691.1311.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig116691.1311.1 >prot_H-elongata_contig116691.1311.1 ID=prot_H-elongata_contig116691.1311.1|Name=mRNA_H-elongata_contig116691.1311.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=165bp QLLRADGWSGDGGGANTAVHIFEYDRRFDQAYPGSFVYYDYNEPRGVPDEback to top mRNA from alignment at H-elongata_contig116691:195..1708- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig116691.1311.1 ID=mRNA_H-elongata_contig116691.1311.1|Name=mRNA_H-elongata_contig116691.1311.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1514bp|location=Sequence derived from alignment at H-elongata_contig116691:195..1708- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig116691:195..1708- >mRNA_H-elongata_contig116691.1311.1 ID=mRNA_H-elongata_contig116691.1311.1|Name=mRNA_H-elongata_contig116691.1311.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=990bp|location=Sequence derived from alignment at H-elongata_contig116691:195..1708- (Himanthalia elongata Himel1 dioecious)back to top |