mRNA_H-elongata_contig11669.1310.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11669.1310.1
Unique NamemRNA_H-elongata_contig11669.1310.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11669.1310.1 vs. uniprot
Match: D7G0Z3_ECTSI (Putative: beta-tubulin folding cofactor E n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0Z3_ECTSI)

HSP 1 Score: 271 bits (693), Expect = 1.190e-84
Identity = 131/176 (74.43%), Postives = 153/176 (86.93%), Query Frame = 1 
Query:    1 GVEFDDPGRGKHDGSVEKPDGLIERYFSCVFGGSGSFLKPGKFSTGVSVVEALRKQYVDVDAPLVAPENLLPDAYASTARGGKKAIEFHGEDNIRKHQQVDTLDHCTLREANISAAGHLAELSEAAGAFVDVDLKANLLSDWHQVGLIASQIPLMEVLSLGGNRMKKSERVPPSIA 528
            GVEFDDP RGKHDG+VEKPDG   RYF+CV GGSGSFLKPGKFSTG+S+ EALR+QYVD++APL+APENLLPDAYAST++GGKKAIEF+GE  IR+ QQVDTLDHCTLRE +IS AG L  L+EAAGAFV+VDLKANLLSDW +VGLIASQ  L+E+LS+G N  K  + VPPS++
Sbjct:   47 GVEFDDPARGKHDGAVEKPDGSSLRYFTCVNGGSGSFLKPGKFSTGISMAEALRQQYVDMNAPLLAPENLLPDAYASTSKGGKKAIEFYGESKIRRRQQVDTLDHCTLRECSISKAGELPALAEAAGAFVNVDLKANLLSDWQEVGLIASQTKLLEILSVGSNMFKTPDGVPPSLS 222
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BLAST of mRNA_H-elongata_contig11669.1310.1 vs. uniprot
Match: A0A6H5L3Q3_9PHAE (CAP-Gly domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3Q3_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 6.250e-80
Identity = 132/204 (64.71%), Postives = 152/204 (74.51%), Query Frame = 1 
Query:    1 GVEFDDPGRGKHDGSVEKPDGLIERYFSCVFGGSGSFLKPGKFSTGVSVVEALRKQYVDVDAPLVAPENLLPDAYASTARGGKK----------------------------AIEFHGEDNIRKHQQVDTLDHCTLREANISAAGHLAELSEAAGAFVDVDLKANLLSDWHQVGLIASQIPLMEVLSLGGNRMKKSERVPPSIA 528
            GVEFDDP RGKHDG+VEKPDG   RYF+CV GGSGSFLKP KFSTG+S+ EALR+QYVD++APL+APENLLPDAYAST++GGKK                            AIEF+GE  IR+ QQVDTLDHCTLRE +IS AG L  L+EAAGAFV VDLKANLLSDW +VGLIASQ PL+E+LS+G N  K  E VPPS++
Sbjct:   47 GVEFDDPARGKHDGAVEKPDGSSVRYFTCVNGGSGSFLKPSKFSTGISMAEALRQQYVDMNAPLLAPENLLPDAYASTSKGGKKVQTCMPLGKCATPFRRKRDLCPMSSADQAIEFYGESKIRQRQQVDTLDHCTLRECSISKAGELPALAEAAGAFVSVDLKANLLSDWQEVGLIASQTPLLEILSVGSNMFKTPEGVPPSLS 250
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BLAST of mRNA_H-elongata_contig11669.1310.1 vs. uniprot
Match: A0A4D9DAF6_9STRA (CAP-Gly domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAF6_9STRA)

HSP 1 Score: 160 bits (405), Expect = 6.970e-43
Identity = 86/171 (50.29%), Postives = 111/171 (64.91%), Query Frame = 1 
Query:    1 GVEFDDPGRGKHDGSVEKPDGLIERYFSCVFGGS--GSFLKPGKFSTGVSVVEALRKQYVDVDAPLVAPENLLPDAYASTARGGKKAIEFHGEDNIRKHQQVDTLDHCTLREANISAAGHLAELSEAAGAFVDVDLKANLLSDWHQVGLIASQIPLMEVLSLGGNRMKKSE 507
            GVE+DDPGRGKHDGSV    G I R+FSC+  G    SFLKP K   GVS++  L K+YV  DAPL AP  +  +AYA+T+RGG+K IEFHGE  IR  QQ+  L+  +LR   ++ AG   E+ E A   V+VDL+ NL SDW ++G +A Q+P +E L L  N M+  E
Sbjct:   44 GVEWDDPGRGKHDGSVLTAAGKIHRHFSCLKPGPTCASFLKPNKLDRGVSLMAVLHKRYVAPDAPLEAPNQVFENAYANTSRGGQKKIEFHGETQIRARQQIGRLEKVSLRGERVAWAGE-EEVKEEASHLVEVDLQGNLWSDWEELGRMARQMPRLENLHLNSNLMRPLE 213
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BLAST of mRNA_H-elongata_contig11669.1310.1 vs. uniprot
Match: A0A7S3HIA2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HIA2_9STRA)

HSP 1 Score: 126 bits (316), Expect = 1.410e-30
Identity = 70/167 (41.92%), Postives = 100/167 (59.88%), Query Frame = 1 
Query:    1 GVEFDDPGRGKHDGSVEKPDGLIERYFSCVFGGSGSFLKPGKFSTGVSVVEALRKQYVDVDAPLVAP-ENLLPDAYASTARGGKKAIEFHGEDNIRKHQQVDTLDHCTLREANISAAGHLAELSEAAGAFVDVDLKANLLSDWHQVGLIASQIPLMEVLSLGGNRMK 498
            GVE+D+P RGKHDGS     G + RYF CV G SGSF+KP K + G + + AL  +YV++DAP +A  +  +P+ + ST RG +K IEF GED IRK QQV  +    +R   +S+    A   +      ++DL+ NLL +W +V  + S  P + VL L  N+M+
Sbjct:   47 GVEWDNPTRGKHDGSSVDSSGKLHRYFECVHG-SGSFIKPTKVAYGRTFLAALNDRYVNLDAPTIAEADGTVPNVFVSTLRGNQKTIEFVGEDKIRKRQQVANVTSVAIRSDTVSSIEVTA--GDVISHLQEIDLQDNLLWNWTEVATLGSVAPNISVLLLHNNKMQ 210
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BLAST of mRNA_H-elongata_contig11669.1310.1 vs. uniprot
Match: A0A448Z797_9STRA (CAP-Gly domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448Z797_9STRA)

HSP 1 Score: 120 bits (301), Expect = 2.440e-28
Identity = 72/173 (41.62%), Postives = 105/173 (60.69%), Query Frame = 1 
Query:    1 GVEFDDPGRGKHDGSVE-KPDGLIERYFSCVFGGSGSFLKPGKFSTGVSVV-EALRKQYVDVDAPLVAPENLLPDAYASTARGGKKAIEFHGEDNIRKHQQVDTLDHCTLREANISAAGHLAELSEAAGA-----FVDVDLKANLLSDWHQVGLIASQIPLMEVLSLGGNRMK 498
            G+ +DD  RGKHDGSV  +    I R+FSC     GSFL+P K   G+++  + LR++YV+++AP++AP N+LP + A+T+ G +K IEF GE  IRKHQQ+  +D  +LR   I+ A +    S+  G        D+DL  NLLS+W +   I  Q PL+E  SL  N ++
Sbjct:   50 GIVWDDTSRGKHDGSVVCRRTNKIVRHFSCG-PTQGSFLRPKKIDFGIALTAKLLREKYVEMNAPVIAPNNILPHS-ATTSSGREKTIEFLGELQIRKHQQLQNIDKISLRREGIARACNENSDSDGGGMSDFRHIRDIDLAGNLLSNWDETVKIMRQFPLLETFSLAHNSIR 220
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BLAST of mRNA_H-elongata_contig11669.1310.1 vs. uniprot
Match: A0A7S3ZSI4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSI4_9STRA)

HSP 1 Score: 117 bits (293), Expect = 1.810e-27
Identity = 80/197 (40.61%), Postives = 106/197 (53.81%), Query Frame = 1 
Query:    1 GVEFDDPGRGKHDGSVEKPDGLIERYFSCVFGGSGSFLKPGKFSTGVSVVEALRKQYVDVDAPLVAP-------------------------ENLLPDAY---ASTARGGKKAIEFHGEDNIRKHQQVD--TLDHCTLREANISAAGHLAELS-EAAGAFVDVDLKANLLSDWHQVGLIASQIPLMEVLSLGGNRMK 498
            GVE+DD  RGKHDG+VEK    I RYF+C   G+GSF+KP K   G S+VEALR++YV +DAP+ AP                         E +    +   A T RG  KAI+F GE N+RK QQ+D   +D   LR A +S  G L + S E   +   +DL+ NLL+ W  VG I    P +  L + GNR++
Sbjct:   49 GVEWDDATRGKHDGAVEKDSQEI-RYFTCP-AGAGSFVKPKKVDRGSSLVEALRQKYVGLDAPVEAPLGVDKNEADSRDFLKGSTEQTKRNGEEITRGTFEHKAYTKRGNTKAIQFCGELNVRKEQQLDDGVVDRVVLRCAGVSRLGSLDQASTEHLASLTILDLQCNLLAAWTDVGDIVKACPNLTSLDVSGNRLQ 243
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BLAST of mRNA_H-elongata_contig11669.1310.1 vs. uniprot
Match: A0A7S2GRA7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GRA7_9STRA)

HSP 1 Score: 113 bits (282), Expect = 7.610e-26
Identity = 69/168 (41.07%), Postives = 99/168 (58.93%), Query Frame = 1 
Query:    1 GVEFDDPGRGKHDGS-VEKPDGLIERYFSCVFGGSGSFLKPGKFSTGVSVVEALRKQYVDVDAP--LVAPENLLPDAYAS--TARGGKKAIEFHGEDNIRKHQQVDTLDHCTLREANISAAGHLAELSEAAGAFVDVDLKANLLSDWHQVGLIASQIPLMEVLSLGGN 489
            GVE+DD GRGKHDGS V K  G+   +F C  G +GSFLKP K   G +    L+++YV +D+   LV  +N       S  T++G +  +EFHGE  IRK QQ + LD  T+R+  I+ AG   +  +AA +   +D++ NLLSDW ++  +A Q+  +  L L GN
Sbjct:   52 GVEWDDVGRGKHDGSAVNKDTGVRVYHFRCAEG-AGSFLKPKKLRRGETFSTVLKRRYVALDSAQRLVDEDNRFDMDVCSVQTSKGRQLPVEFHGELKIRKQQQAEDLDRMTVRDEMIALAGD--DALDAAPSLASLDMQGNLLSDWTEIAALAKQLTSLTDLRLSGN 216
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BLAST of mRNA_H-elongata_contig11669.1310.1 vs. uniprot
Match: A0A1E7FAE4_9STRA (L domain-like protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FAE4_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.480e-23
Identity = 66/168 (39.29%), Postives = 95/168 (56.55%), Query Frame = 1 
Query:    1 GVEFDDPGRGKHDGSVE-KPDGLIERYFSCVFGGSGSFLKPGKFSTGVSVVEAL-RKQYVDVDAPLVAPENLLPDAYASTARGGKKAIEFHGEDNIRKHQQVDTLDHCTLREANISAAGHLAELSEAAGAFVDVDLKANLLSDWHQVGLIASQIPLMEVLSLGGNRMK 498
            G+ +DD  RGKHDGSV  +    I R+F+C     GSFL+  K   GV++   L R +YV ++AP++AP NLLP + A T+ G +K+IEF GE  IRKHQQ++ +   +LR   IS      +         ++DL  NL  DW QV  I  +   +E+ SL  N ++
Sbjct:   54 GIVWDDHSRGKHDGSVICRKTNQIVRHFACG-PTQGSFLRLRKLDLGVTLTTTLLRDKYVKMNAPIIAPNNLLPHS-AKTSSGREKSIEFLGELQIRKHQQLENIVKISLRREGISKVSDDDDDMAEFQHIKEIDLAGNLFCDWEQVFKIIHKFSCLEIFSLAHNYIR 219
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BLAST of mRNA_H-elongata_contig11669.1310.1 vs. uniprot
Match: A0A851NYD1_9GALL (Tubulin-specific chaperone E (Fragment) n=1 Tax=Penelope pileata TaxID=1118817 RepID=A0A851NYD1_9GALL)

HSP 1 Score: 103 bits (257), Expect = 1.390e-22
Identity = 70/178 (39.33%), Postives = 95/178 (53.37%), Query Frame = 1 
Query:    1 GVEFDDPGRGKHDGSVEKPDGLIERYFSCVFGGSGSFLKPGKFSTGVSVVEALRKQYVDVDAPLVAPENLLPDAYASTARGGKKAIEFHGEDNI-RKHQQVDTLDHCTLREANISAAGHLAELSEAAGAFVDVDLKANLLSDWHQVGLIASQIPLMEVLSLGGNRMK-KSERVPPSIA 528
            GVE+DDP RGKHDG+ E       +YF C     GSF++P K + GV  + A++ +Y   D      +N   D +      GKK +EF G D I  K +Q+  L H ++RE  +S AG   E+S        +DL  NL+S W  V  IASQ+P +E L + GN+MK  S  VP S A
Sbjct:   38 GVEWDDPQRGKHDGTYEGT-----QYFKCRHPRGGSFIRPSKANFGVDFLTAVKDRYGLNDKQ--DRQNGTEDTHVI----GKKTVEFVGRDFIAEKQRQLHQLVHVSVRECAVSHAGQKEEISRTCANIRCIDLSKNLISCWDTVTDIASQVPDLETLDISGNKMKFPSTSVPESSA 204
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BLAST of mRNA_H-elongata_contig11669.1310.1 vs. uniprot
Match: A0A2R5H1J9_9STRA (Tubulin-specific chaperone E n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5H1J9_9STRA)

HSP 1 Score: 103 bits (256), Expect = 2.500e-22
Identity = 69/166 (41.57%), Postives = 90/166 (54.22%), Query Frame = 1 
Query:    1 GVEFDDPGRGKHDGSV-EKPDGLIERYFSCVFGGSGSFLKPGKFSTGVSVVEALRKQYVDVDAPLVAPENLLPDAYASTARGGKKAIEFHGEDNIRKHQQVDTLDHCTLREANISAAGHLAELSEAAGAFVDVDLKANLLSDWHQVGLIASQIPLMEVLSLGGNRM 495
            GVE+ D GRGKHDGSV EK  G   RYFSC  G  GSF+KP     GV+  +AL  +Y + +A +   E +  +A      G    IE  G D IR  QQ+  L   +L    + +AG    +SE      ++DL  NL+  W  VGLIASQ+P +E LSL  NR+
Sbjct:   40 GVEWADAGRGKHDGSVKEKTTGEETRYFSCPQG-QGSFVKPQFLRVGVAFEDALMARY-EPEAAVRVGEGVEGEAGPRRRNGEAVEIEAVGMDQIRGKQQIHKLREVSLSSCVVVSAGQPGWISEHCPHIKELDLADNLIDSWKTVGLIASQLPGLEHLSLARNRL 203
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11669.1310.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0Z3_ECTSI1.190e-8474.43Putative: beta-tubulin folding cofactor E n=1 Tax=... [more]
A0A6H5L3Q3_9PHAE6.250e-8064.71CAP-Gly domain-containing protein n=1 Tax=Ectocarp... [more]
A0A4D9DAF6_9STRA6.970e-4350.29CAP-Gly domain-containing protein n=2 Tax=Monodops... [more]
A0A7S3HIA2_9STRA1.410e-3041.92Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A448Z797_9STRA2.440e-2841.62CAP-Gly domain-containing protein n=1 Tax=Pseudo-n... [more]
A0A7S3ZSI4_9STRA1.810e-2740.61Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2GRA7_9STRA7.610e-2641.07Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A1E7FAE4_9STRA3.480e-2339.29L domain-like protein n=1 Tax=Fragilariopsis cylin... [more]
A0A851NYD1_9GALL1.390e-2239.33Tubulin-specific chaperone E (Fragment) n=1 Tax=Pe... [more]
A0A2R5H1J9_9STRA2.500e-2241.57Tubulin-specific chaperone E n=1 Tax=Hondaea ferme... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11669contigH-elongata_contig11669:1636..8391 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score272.7
Seed ortholog evalue1.2e-70
Seed eggNOG ortholog2880.D7G0Z3
Preferred nameTBCE
KEGG koko:K21768
GOsGO:0000226,GO:0000278,GO:0000902,GO:0000904,GO:0003008,GO:0003012,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005856,GO:0005874,GO:0006457,GO:0006996,GO:0007010,GO:0007017,GO:0007021,GO:0007023,GO:0007049,GO:0007051,GO:0007052,GO:0007154,GO:0007267,GO:0007268,GO:0007274,GO:0007275,GO:0007399,GO:0007409,GO:0007422,GO:0007610,GO:0007626,GO:0008092,GO:0008150,GO:0008344,GO:0008582,GO:0009653,GO:0009791,GO:0009987,GO:0014889,GO:0015630,GO:0015631,GO:0016043,GO:0022008,GO:0022402,GO:0022607,GO:0023052,GO:0030030,GO:0030154,GO:0030182,GO:0030534,GO:0031109,GO:0031175,GO:0032501,GO:0032502,GO:0032989,GO:0032990,GO:0032991,GO:0034622,GO:0040007,GO:0040008,GO:0043014,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043500,GO:0043933,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0046785,GO:0048468,GO:0048589,GO:0048638,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048934,GO:0048935,GO:0048936,GO:0050789,GO:0050793,GO:0050794,GO:0050803,GO:0050807,GO:0050896,GO:0051082,GO:0051087,GO:0051128,GO:0051239,GO:0051258,GO:0051960,GO:0051963,GO:0061564,GO:0065003,GO:0065007,GO:0065008,GO:0071840,GO:0097435,GO:0098916,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:0099536,GO:0099537,GO:0120036,GO:0120039,GO:1902850,GO:1903047,GO:1904396,GO:1990727,GO:2000026
EggNOG free text desc.post-chaperonin tubulin folding pathway
EggNOG OGsKOG3207@1,KOG3207@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Hectar predicted targeting categoryother localisation
Exons5
Model size529
Cds size528
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11669.1310.1prot_H-elongata_contig11669.1310.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11669 1636..8391 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929678.7738025-CDS-H-elongata_contig11669:1635..17311622929678.7738025-CDS-H-elongata_contig11669:1635..1731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11669 1636..1731 -
1691679116.4994538-CDS-H-elongata_contig11669:1635..17311691679116.4994538-CDS-H-elongata_contig11669:1635..1731Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11669 1636..1731 -
1622929678.800624-CDS-H-elongata_contig11669:3045..31501622929678.800624-CDS-H-elongata_contig11669:3045..3150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11669 3046..3150 -
1691679116.5157952-CDS-H-elongata_contig11669:3045..31501691679116.5157952-CDS-H-elongata_contig11669:3045..3150Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11669 3046..3150 -
1622929678.815751-CDS-H-elongata_contig11669:6150..62251622929678.815751-CDS-H-elongata_contig11669:6150..6225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11669 6151..6225 -
1691679116.5240886-CDS-H-elongata_contig11669:6150..62251691679116.5240886-CDS-H-elongata_contig11669:6150..6225Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11669 6151..6225 -
1622929678.864703-CDS-H-elongata_contig11669:6882..70741622929678.864703-CDS-H-elongata_contig11669:6882..7074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11669 6883..7074 -
1691679116.5319989-CDS-H-elongata_contig11669:6882..70741691679116.5319989-CDS-H-elongata_contig11669:6882..7074Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11669 6883..7074 -
1622929678.9201143-CDS-H-elongata_contig11669:8331..83911622929678.9201143-CDS-H-elongata_contig11669:8331..8391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11669 8332..8391 -
1691679116.5405972-CDS-H-elongata_contig11669:8331..83911691679116.5405972-CDS-H-elongata_contig11669:8331..8391Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11669 8332..8391 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11669.1310.1

>prot_H-elongata_contig11669.1310.1 ID=prot_H-elongata_contig11669.1310.1|Name=mRNA_H-elongata_contig11669.1310.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=176bp
GVEFDDPGRGKHDGSVEKPDGLIERYFSCVFGGSGSFLKPGKFSTGVSVV
EALRKQYVDVDAPLVAPENLLPDAYASTARGGKKAIEFHGEDNIRKHQQV
DTLDHCTLREANISAAGHLAELSEAAGAFVDVDLKANLLSDWHQVGLIAS
QIPLMEVLSLGGNRMKKSERVPPSIA
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mRNA from alignment at H-elongata_contig11669:1636..8391-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11669.1310.1 ID=mRNA_H-elongata_contig11669.1310.1|Name=mRNA_H-elongata_contig11669.1310.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=6756bp|location=Sequence derived from alignment at H-elongata_contig11669:1636..8391- (Himanthalia elongata Himel1 dioecious)
GGTGTTGAGTTCGACGATCCTGGCAGGGGAAAGCACGACGGCTCGGTCGA
AAAACCCGACGTAAGTGCATACTTACCACCCCTTGCCGGCTGATGATTGA
GGCCAATGAACGACGAATATAACGAGAGCGTCATTGCGATCGGACCAATT
TCCGCCGTCGTATATTTCCCCTGTATTATATCACTTTTGAGAAGTGCGGG
GATTTGTTGATGGATTTATCGAAGCATATTTCGTCCTCTTTATTGCTGAG
AGCGCCGGACACTGATAGGCAACAATAACAACAGACCCTTCGAGTTGGTC
GGAGTGCTGCTGGATGTAGAGTACGGGGGCTTGGTAAACTGTTTGACAAT
CGTTGCGCCGCCACTCCTCTGTGAATGTCACAGAACCTCATCTACGAGTA
ACCTACCAATTTCACTTTAGACTGACCACTTCTCAGATGTTTTGTTTGAA
AAATGCGCAACACATCAGACAGCGGTCTCTCTGTAGCCTCTAATTCATAT
ACTGGATCTCTTGTAGCACTCCATGCAGTAGACTAGACATTGTAGTTCGT
ACCGAAGGATATCGTCGTGACGCACGTAGGATTTTCGGTGCTATCAGATG
GTTGGACGTGACGAGAGGGGTTTTGTGGTGATTTCGGATCCATCCCCAAC
GGTTCGCGTAGCGGGGTGACGTCACTAAGATGCGACACGTTGACATTCTT
ACATCTTAAGGTCCACTAGCGGGATTGGCATTTGATAGGCCCTATGCGTG
AATCAGTTTTGTGTCACCATATTTTTTCCCGTTCCAAGGATAATACAACG
ATTTTGTGCTTTAAGGTAGTAATGTCCACATTCGAACCTGACGATAGTTG
GCCCCCTAGACTGCACCTCTCACGGCGCTAAGAAAGTGTGGATGTTCGGA
GGGTTGGAATGAGTACAAGTTTTAAAATAAAAATACTCAGAAAATGAGCA
TTGATTATTCCATCGTCCCCAAACCCGCTTACTCACAGTCGGGTTGGCGA
TGATTTTTCATTTTTTATTCAAGAAATAAAAAAGAAGCAACACACACAAA
AAATTGCAGGCACCAGCACACCCATCGAAATATCTATCCACTGTTCAGGT
ACGTACTCCGGATGAAACACGAGTGCCTCCGATAAATACCATCTCCAAGG
TGCCTGAAGCGAGTTCCCCGTCTCTCAACAGCGCCCCCTGCTCCCGTCCC
CCGAGAAACGACCCCACTAAATATCCAAACACCTACTATTGTTGCTGTGA
AAACGAGTCTTATTTTTTACTCTAATTCCCCTTCCTCCCGCCCCCCCCTC
TGCTCTCGCGCACGCAGGGGTTAATTGAGCGCTACTTTTCGTGCGTTTTC
GGCGGCAGTGGAAGCTTCCTCAAGCCGGGAAAATTCTCCACCGGGGTTTC
CGTGGTGGAGGCGCTGCGCAAGCAGTACGTCGACGTGGACGCGCCCCTCG
TGGCGCCGGAGAACTTGCTGCCCGACGCGTACGCCTCCACCGCGAGGGGT
GGTAAGAAGGTACAAGAGTGAGGAAGGGATATGAAAGGGGGGGAGCGGGG
ATCGATAATGCATCACTGATAAAACAGTCACTTAATATGACCATAATATT
TTGTGTATTTTTTATAGCATAGTATAGTGTAGGCTGTCCAAACAAAATGA
ATCATGAGGCTTTGCGGCGCCGGCGAAGGAGGCCAGGCCAAGTAGATCAC
CTGCTACAGCTCTTGTTCGTATCCCGTTTTAGTGCGTCGATTTATGGACC
AAAAGCGCGTCGTGCGTCCTCATCGTTGATAAAACACGAATGCAACACAA
AACTATACTGTATATATAGAGGTGTGTCTGTTTATTAAATTCGACATAAC
CGCGCAATCCGGCCCTGTCACGCTAGTCCTTTTAGGTTACTCGCATTGAT
CCTCCCAATGGGGAGTCAATCTATGTGTGTGTGTATTTATTAAATTGTTG
CACATGACCGCGCAATCTGGCCCTGTAATCTACTAATTCTATACTACTGC
ATGTTACCCACCTGGAAGTTATGGGTGGGTGTGCGTTGTTTTGGTTTTAG
AGAGAGATATCTATTCCTCACAACTAATAATACAGATATAGCTATTCCTC
ACAACTAATGCTACTTTTTTTTCGTTTTTTCCCTGTGATCTTTTTTTTTT
GTGAAACAATGAAAAGGCGATCGAGTTCCACGGTGAGGACAACATCCGGA
AGCATCAACAAGTGGACACACTCGACCACTGCACCCTCAGGGTACGTTAA
TACATACCTAGTACGTAGTCCAGATTAACTCCAGATTCAGCCTGGGTGAG
TATAATGAGCGGGCTAATGCGCGGGACGGGACGGCCGAACTTGCCTCGCG
AGACCAAATTTTCAGGCGCGGACGGGAACAGAGGAAAATAATTTTCCCTG
TTCAGCTGACCACGAGCAGAATTGGCTGATCCATACTATACTATACTGCT
ATTCTAATAGATGATAACCACACCCACCCACACCCAACACACTGCCGCTC
TTTACCTTTATTACCGCTATAGAATCCAGAAAAAATAAATATATGGTGGG
GATCGAACCCACGACTTGATTGTACTTCAATTAACTTTACGACTGATTCA
CAAGGTGAACAGTATATGCTCGGGCGAACCATTTTTCATAATATATATAT
ATATATATATATATATTGGCTAGAAAATGCTTCCGAATGAGACGTTGCTT
CCTTCGGCTGTTGTTTGAGCTATCTTCGCCTTCAGCATTGCCGGTCTATC
GTTGAAAATGTATCGTTAAAATCTCGGTGCATGAGAAAATGTATCGTCTT
TTGCATGTTTTACCTGGTTCTTTGATGTCGTTGGAAAACATACCGATTTA
AGAGTTACAGTAGTCAGAGTAGCAGTGATGTAGCAAAAAAAAGCAATACA
CTATTTATACGTTTTTAGTACCAGGGTATACTGTTTGGGGCTGTCGTATA
TACCTTTGGCTATTTCTCTCCGAATGAAGCAGCTCTTATGGTGTCAGCAA
AAACGTCCTGAAAACGCACCCGGGGAAGACCGTACTGTCGTTGACGCCGT
TGCCACTGCCGCTGCTGCTGCTTCTGTTTCCATGTTGTAACCCCTCCATC
AAGTATTTTTTTATTTTTTGCCGAAACGCTTGTACGGAGGGAGGGTACTC
AAGTTTTGCATGTCTTAAGCTGCCAGGCCATTGATCTCGCGTCCTCGGCA
GGGAGGACGGAGAGAGCATTGTTTTTACACGATTGATCGCCGGTGGCCAA
TCGTCCCTTCCTATTTTGCCCAAAGGCGGCCCAAAATTTGTTTTCACTCA
CGTCTTCACCAATTTTTGCCTTCGCAGGCACTTGTTCTCCCCCAGTGTCG
CTCCCATTTTCGTATGGCTGTCACATGCTTCTACTTTCAATGTTCATTTC
TCCTTTCAAATGCTCTATAACGGGTACACACCGTTTTCACCCTTATCCGA
GCCTTAACCCCATTTCAGCTTGTCCTCGTCGTCTTCATCTACTAATACGT
GCCCGGAGGTCAATGTCTTCATTCACCATAAGGCAGTGACAGTATTGAAG
TTGACCTTCGACTCTGCCCATTCATTCATTCATTCATGCAAGCAAGCAAG
TTTTTCTTTGAATGTACGAGGTACAGTATATATTTTCGCCGATTTTTTTT
TGTAGTTCCTGATATATCTTCCTACAAAAAAAAAAAAATTGTCTTCTAAT
ACTTTTTTGTGGTTATCACATATAGAAGAGTATGGATCAACGGGATATGG
TTGTCTCCTGCTTGAGGTCAGCTGAACAGGGGGGAGTATTCACAAACCGG
CGTGGCGCCTCCTTACGTGTCATGCCGGTTTGCGCGGTTTAATGTAAATT
GATAAAAAAAGGGGAGGGAAAGTCCCTGTCCCCGTTCGCGCGTGATAATT
TCGTCTCGCGTGACGGGTTCAGTCGTCCCGTCCCGCGCCAGCGAGCTCAT
TCTCCAAAACCAGGCTGAATTTGGTCGGTACTCCCGGGATCCTCTTGATC
CTTTTGTTTTCCGTGACGGTGTTCGTATCTACCGTCAACAGCCAACGGGC
GAATCCCGAGTTCATCAAGTCACGCAATTGCGTACCGTTCAAACCCACCC
ACAGCTCTTCGTTCAATCATTTTCCGATAGGCCTGCGCCCCGACAGCCAC
GCGCCGTTCGCTAACAACAACTGTGTATCCTCTTTTGTGTTTCTTTTTTT
GTTTCTTTTCTTTGGAGATGCTCCTTTTTTTTCTGAGTATTATGCACCAT
TGCCGTTTCCTTCCGGATAGTGGTTTTTCTACCTTGTGACCCCGGACTGA
ATTTTTACGTCAGATTACTTGAGAGTTCGATCAATCAAGCAATCAAACAA
ACCACCGAGAGACTACCGGCACTGAGCCAGCCGTCTTTATAGTAGCTTGA
ATAACGGTAACAGCCTATTCAGGTAAACCGGCAGTAAACTACGAGATAAA
ACCTCCCACCGCTCTTCTTCTCGCCTCTTTACTTACACGCACACCAAATT
TCAGCGAAATCGATGGACTTCAATTTTTGTGTGAAAAATTGTGAAAATTC
AGATTGAGTCACAGAAAAAAAATGATTCAACAAATCTTAAACTAAAACGC
GGCTTTCACGACACGAACTTGGCGGATTTCTAAGCTGAAAGGATGTGCGT
GAGCGCCTTGACTATCCGATCACGACGATATGACCAGCTTGCCGATTCGT
TGCCGTTCCAAATATAGGATCAGCGGATACTTTTATGTGTTTTCTTGGTC
AGCCCAGCCTGTATTCACCCCGATTTTCATTGCCAAACGTCCCCCCTTTT
CCGGGATATCCATCCAATCCAATCATTTCCATATTGCTGGACTACATTAT
CAACCCAGTCTAATATATGTGTTATTGTGTAACCTCCTCGCCTTGCTTGC
CCCGCCCTCTCCGAATTTCTCTCTCTCTCTCTCTTTTACTGTCTTTCTAA
TCCTTCATTATCCGTTATCCATCATCCTCAGTCTCGCATTTTGCTACCAT
CTCAGCTTTCTTACTTCTCTTCCCATTCATAGTAGTTAAATAATTCAATG
ATTCAATGAATGCCCCTAATCCTGCAACCTCGCTGTTCTGTAAGTTGTGC
TTGTGCGCTTGGAAGAGCACACTATTATTAGCAGGGATCTTCGCTAAATT
GATCTTCGTCGCTTCCGAGTCCTTTTCTAGATATCTATTCCATTTTCCTT
TTCCTTTTCCGGCATGCTGGGGGTTTCCACACTTTTGCCAGGAGGCGAAT
ATCTCGGCGGCGGGGCATCTGGCGGAGCTCTCAGAGGCCGCGGGGGCGTT
CGTGGACGTGGACCTGAAGGCCAATCTTCTGTCCGACTGGCACCAGGTTG
ATAGAGAAGAAGGATTATTGGGTGAAATGGTTGCTAAATAGCGATAGGCT
AAATTATCTAGGATTTAGAAGAATGGGTTGTAGATAAAAACAAATGAAAA
GAATGAAGGCTCTATGATGATAGACTGAGTTACTTAGGACTGTTCCTTAG
GACTGCAAGACTGAGTGCTGCAGAATGAAATAGTGACCTCGAGATAATTG
AGAGAGTGAACCCGAAATATCGTGGAGGTCGTCGGCGCAGTGGAGGTAGG
TCGTGTGTCGTGTGGCAACTCTCTGATCCATACCATGCCATATAAGAGGG
GGTAGTAATAGAGGTAGAAAAGGAGACAGAGCATTGGGAATATAATCGGG
GGAAAAAACAAAAACAAAAAAGGTACCAGGTATGAAAAAAGAGTTGCTCG
CTTTTTCTGTGCCATACCGGTGAGGGTAAGAAGAGGGCCATCCTTTCGGA
TTTCAGCTTTTTTTTAAATAACTTTTTATCGGCATGTACTTTTGATCCTG
ACGGGGTTTTCTATTTCGCGTCTTGCGCTGTTCCATGGTTCAGGAGGCTC
TGTTTCTGCAAAGGACTATCGAGTAGGCCGTACTTGTATTCTTTGGTCCG
TGCTTTTGTTCTTTTTCCCTTTAGTGTTCTTGCCTCTTGTAGCATTAAGC
TATAATACTGCTAATTACAGTTCATGGGGTTGTTAGTTAATCCAGTGGAT
TCTGTGAGCTCAGAGACCTTGGTCTGTCAAAGAATATTTTCTCAACCAAC
GGGGTAAAAGGCATCGCACTTTATTAGTATAGACCTGCCGATATAATGGA
TAGCTGAAAAGCCCGAGAGCATCCATTAGCTTACGAGAGTGCGCTGCCAG
GAGCATTCAGGATACTATTATTGGTCGAATGTATAAAAAATATACCGTTT
TATATATATATATATATATATGGTGTGTGTGCGGCGCTTACGCGGTGGTG
TTGAAAGATCAAAGCCCCCCTTGTGGTATTTGCAGTATATACAATGTAGT
ATAGTGTAGTACAGTTGCGCCCGCTGATGGTGCAGCACTTGGTTATTCGT
TGCGTCCAGTTGTATGTCCTGTTTGGGGCAGCAACGCAAGTCTGATGAGT
AAAAGCTGATATAACGGAAGATTTTGTACTCAAGGGTAGTGTTGTACACA
TTCGAACCTGGCGATAGTTGGTCCCCTGGACTGCACCTCACACGGTGCTA
AGAAGGCGAGGATGTTCGGAGAGTTGGAATGAGATCAAGGTTTTTAAAAA
TAAAATAATAATAATAAAAACGAACGAAGACCCCCTCCCCCCCGGCCTGG
AAAAAATTAGGTGGGTCTAATCGCATCTCAGATACCGCTCATGGAGGTGC
TGTCTCTCGGGGGGAACAGGATGAAGAAGTCGGAGAGAGTCCCGCCCTCC
ATCGCC
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Coding sequence (CDS) from alignment at H-elongata_contig11669:1636..8391-

>mRNA_H-elongata_contig11669.1310.1 ID=mRNA_H-elongata_contig11669.1310.1|Name=mRNA_H-elongata_contig11669.1310.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1056bp|location=Sequence derived from alignment at H-elongata_contig11669:1636..8391- (Himanthalia elongata Himel1 dioecious)
GGTGTTGAGTTCGACGATCCTGGCAGGGGAAAGCACGACGGCTCGGTCGA
AAAACCCGACGGTGTTGAGTTCGACGATCCTGGCAGGGGAAAGCACGACG
GCTCGGTCGAAAAACCCGACGGGTTAATTGAGCGCTACTTTTCGTGCGTT
TTCGGCGGCAGTGGAAGCTTCCTCAAGCCGGGAAAATTCTCCACCGGGGT
TTCCGTGGTGGAGGCGCTGCGCAAGCAGTACGTCGACGTGGACGCGCCCC
TCGTGGCGCCGGAGAACTTGCTGCCCGACGCGTACGCCTCCACCGCGAGG
GGTGGTAAGAAGGGGTTAATTGAGCGCTACTTTTCGTGCGTTTTCGGCGG
CAGTGGAAGCTTCCTCAAGCCGGGAAAATTCTCCACCGGGGTTTCCGTGG
TGGAGGCGCTGCGCAAGCAGTACGTCGACGTGGACGCGCCCCTCGTGGCG
CCGGAGAACTTGCTGCCCGACGCGTACGCCTCCACCGCGAGGGGTGGTAA
GAAGGCGATCGAGTTCCACGGTGAGGACAACATCCGGAAGCATCAACAAG
TGGACACACTCGACCACTGCACCCTCAGGGCGATCGAGTTCCACGGTGAG
GACAACATCCGGAAGCATCAACAAGTGGACACACTCGACCACTGCACCCT
CAGGGAGGCGAATATCTCGGCGGCGGGGCATCTGGCGGAGCTCTCAGAGG
CCGCGGGGGCGTTCGTGGACGTGGACCTGAAGGCCAATCTTCTGTCCGAC
TGGCACCAGGAGGCGAATATCTCGGCGGCGGGGCATCTGGCGGAGCTCTC
AGAGGCCGCGGGGGCGTTCGTGGACGTGGACCTGAAGGCCAATCTTCTGT
CCGACTGGCACCAGGTGGGTCTAATCGCATCTCAGATACCGCTCATGGAG
GTGCTGTCTCTCGGGGGGAACAGGATGAAGAAGTCGGAGAGAGTCCCGCC
CTCCATCGCCGTGGGTCTAATCGCATCTCAGATACCGCTCATGGAGGTGC
TGTCTCTCGGGGGGAACAGGATGAAGAAGTCGGAGAGAGTCCCGCCCTCC
ATCGCC
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