mRNA_H-elongata_contig116646.1305.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116646.1305.1
Unique NamemRNA_H-elongata_contig116646.1305.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig116646.1305.1 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI)

HSP 1 Score: 168 bits (426), Expect = 4.570e-43
Identity = 137/179 (76.54%), Postives = 149/179 (83.24%), Query Frame = 1 
Query:    1 QVWSTSSGRLMLSLRGHSSVITDLAVSPDNSMLVSSSEDRNLRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRESLITDDVIPIVLPHKNHAGNNIPVKCLSVSPAGNLIAAGCDDGAVRVWAYGDADDDAAWGSGKHNTRGAGRDKFGGGQVYRREAPQ 537
            +VWS +SGRLML LRGH+SVITD+ VSPDNSMLV          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   ++SL T+DV+PIVLPH N  G  IPV CLSVSPAGNLIAAGC DGAVRVWAYGD+DDDAAWG+GKHNTR  GRD  G G+VYR EAP+
Sbjct:  381 KVWSVTSGRLMLCLRGHASVITDMDVSPDNSMLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRGQDSLATEDVVPIVLPHTNEQGGMIPVMCLSVSPAGNLIAAGCSDGAVRVWAYGDSDDDAAWGTGKHNTRRTGRDTIGRGEVYRSEAPR 559
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BLAST of mRNA_H-elongata_contig116646.1305.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 152 bits (384), Expect = 1.850e-37
Identity = 138/204 (67.65%), Postives = 148/204 (72.55%), Query Frame = 1 
Query:    1 QVWSTSSGRLMLSLRGHSSVITDLAVSPDNSMLVSSSEDRNLRVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDRE-------------------------SLITDDVIPIVLPHKNHAGNNIPVKCLSVSPAGNLIAAGCDDGAVRVWAYGDADDDAAWGSGKHNTRGAGRDKFGGGQVYRREAPQ 537
            +VWS +SGRLML LRGH+SVITD+ VSPDNSMLV          XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX   +                          SL T+DV+PIVLPH N  G  IPV CLSVSPAGNLIAAGC DGAVRVWAYGD+DDDAAWG GKHNTR AGRD  G G+VYR EAP+
Sbjct:   66 KVWSVTSGRLMLCLRGHASVITDMDVSPDNSMLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLRGQGRWGRARLGRGPCFIVLFLLASGSHGSLATEDVVPIVLPHTNEQGGMIPVMCLSVSPAGNLIAAGCIDGAVRVWAYGDSDDDAAWGIGKHNTRRAGRDTIGRGEVYRSEAPR 269
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116646.1305.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEP1_ECTSI4.570e-4376.54WD-repeat protein, putative n=1 Tax=Ectocarpus sil... [more]
A0A6H5KTA2_9PHAE1.850e-3767.65Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116646contigH-elongata_contig116646:356..1798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score159.1
Seed ortholog evalue3.3e-36
Seed eggNOG ortholog2880.D8LEP1
KEGG koko:K02606,ko:K11797,ko:K11798
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
EggNOG free text desc.regulation of cell shape
EggNOG OGsCOG2319@1,COG5141@1,KOG0644@2759,KOG0955@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko04121
Hectar predicted targeting categoryother localisation
Exons3
Model size948
Cds size918
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116646.1305.1prot_H-elongata_contig116646.1305.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116646 356..1768 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929678.287035-CDS-H-elongata_contig116646:355..4531622929678.287035-CDS-H-elongata_contig116646:355..453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116646 356..453 -
1691679116.3047647-CDS-H-elongata_contig116646:355..4531691679116.3047647-CDS-H-elongata_contig116646:355..453Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116646 356..453 -
1622929678.311016-CDS-H-elongata_contig116646:516..10851622929678.311016-CDS-H-elongata_contig116646:516..1085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116646 517..1085 -
1691679116.3149817-CDS-H-elongata_contig116646:516..10851691679116.3149817-CDS-H-elongata_contig116646:516..1085Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116646 517..1085 -
1622929678.3251417-CDS-H-elongata_contig116646:1517..17681622929678.3251417-CDS-H-elongata_contig116646:1517..1768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116646 1518..1768 -
1691679116.322795-CDS-H-elongata_contig116646:1517..17681691679116.322795-CDS-H-elongata_contig116646:1517..1768Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116646 1518..1768 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929678.3394144-UTR-H-elongata_contig116646:1768..17981622929678.3394144-UTR-H-elongata_contig116646:1768..1798Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116646 1769..1798 -
1691679116.3306413-UTR-H-elongata_contig116646:1768..17981691679116.3306413-UTR-H-elongata_contig116646:1768..1798Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116646 1769..1798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116646.1305.1

>prot_H-elongata_contig116646.1305.1 ID=prot_H-elongata_contig116646.1305.1|Name=mRNA_H-elongata_contig116646.1305.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=306bp
MLSLRGHSSVITDLAVSPDNSMLVSSSEDRNLRVWDPRTGASLAVLRGHE
APVNLVRFAPGDSVAMSASEDGTCRLWDLRDRESLITDDVIPIVLPHKNH
AGNNIPVKCLSVSPAGNLIAAGCDDGAVRVWAYGDADDDAAWGSGKHNTR
GAGRDKFGGGQVYRREAPQQQPRPAPPPPAAVEPPQGDISNGLAAAVTAA
AAWGVAAGNRGEAERDASVSGSAAGSAFTRAWERAGSMGLMVGALGGNDL
PGLQGGQEAAVAAAAATVGEGDVGRGREGGSGADGAGTAAKDKGGLEVRL
GTMMFG
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mRNA from alignment at H-elongata_contig116646:356..1798-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116646.1305.1 ID=mRNA_H-elongata_contig116646.1305.1|Name=mRNA_H-elongata_contig116646.1305.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1443bp|location=Sequence derived from alignment at H-elongata_contig116646:356..1798- (Himanthalia elongata Himel1 dioecious)
CAGGTCTGGTCCACCAGCTCGGGGCGCCTTATGCTGTCCCTGCGAGGTCA
CTCCAGCGTGATCACAGACCTGGCCGTCAGCCCCGATAACTCGATGCTCG
TGAGCTCCTCCGAGGACCGCAATCTTCGCGTCTGGGACCCGCGGACGGGG
GCATCGCTCGCCGTCCTGCGCGGCCACGAGGCACCGGTAAACCTCGTGCG
CTTTGCGCCGGGAGACAGCGTCGCCATGTCCGCTTCGGAGGACGGTACCT
GTCGACTTTGGGACCTAAGAGATCGAGAGAGGTGCGCGTTCGTTTGTGCT
GGGTGTCTTACGGCGCTTATCCCACTGCCCAATATTGGGCCGACTTGTGG
GTGTCTACTCGTTAAGATGATTCCCCAAATTAATCCTTGCAGATGGTAGT
CCCAAGCACTGGGAAATATGATGGGCGTCTTTTTTGCCCGCCCACCTTTT
TACGTATATAATCAAACGGGGATATCGTTGGAGGTTCGTCACGCATTTTG
ACGCGATGTGGAGGAGAGCGGACATGGTCGCTGTGGCTTTCCGTACCGGT
GGTTATGGTCGTTATATTCGACAAGCAGCGTGCTTTCTCTTAACTTGCGT
GACTTGGTGTGTGTATGTGTGTGTGTTCTCGTCTCGGGTCAATACGTCAT
TGCCCCGTCTACTGCCCCCTCCGATCTGAATCATCCCCCCCCTCCCCCAA
CCAAAACTCCCAGCCTCATCACGGACGACGTGATTCCGATCGTGCTTCCT
CACAAGAACCACGCGGGCAACAACATCCCCGTTAAGTGCCTCTCCGTGAG
TCCCGCCGGCAACCTTATCGCCGCCGGCTGCGACGATGGCGCCGTGCGGG
TGTGGGCCTACGGTGACGCCGACGATGATGCAGCATGGGGAAGCGGCAAG
CACAACACCCGCGGTGCCGGCAGAGATAAGTTCGGCGGTGGCCAGGTCTA
CAGGAGGGAGGCGCCACAGCAGCAGCCCCGCCCGGCACCTCCACCTCCTG
CCGCCGTGGAACCGCCCCAGGGGGATATTTCCAATGGGTTGGCAGCGGCA
GTGACAGCAGCAGCTGCATGGGGGGTCGCCGCCGGAAACCGGGGTGAAGC
AGAGCGCGACGCGAGCGTCTCGGGCTCGGCAGCGGGATCGGCTTTCACCA
GGGCGTGGGAGCGAGCCGGCAGTATGGGCCTGATGGTGGGAGCGCTCGGT
GGCAACGATTTGCCCGGTCTCCAGGGCGGGCAGGAGGCGGCGGTTGCTGC
TGCTGCTGCTACTGTTGGAGAGGGCGATGTCGGTGTCGAGGTTAGTGGTG
GTGGTGTTGAGGTAGAAGATAGGGGACGAGAAAGGCGGACGCGAGGGCGA
GGGAGGGAGGGGGGAAGCGGCGCTGACGGAGCTGGAACCGCGGCCAAGGA
TAAGGGGGGGCTTGAGGTTCGCCTGGGGACGATGATGTTCGGT
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Coding sequence (CDS) from alignment at H-elongata_contig116646:356..1798-

>mRNA_H-elongata_contig116646.1305.1 ID=mRNA_H-elongata_contig116646.1305.1|Name=mRNA_H-elongata_contig116646.1305.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1836bp|location=Sequence derived from alignment at H-elongata_contig116646:356..1798- (Himanthalia elongata Himel1 dioecious)
ATGCTGTCCCTGCGAGGTCACTCCAGCGTGATCACAGACCTGGCCGTCAG
CCCCGATAACTCGATGCTCGTGAGCTCCTCCGAGGACCGCAATCTTCGCG
TCTGGGACCCGCGGACGGGGGCATCGCTCGCCGTCCTGCGCGGCCACGAG
GCACCGGTAAACCTCGTGCGCTTTGCGCCGGGAGACAGCGTCGCCATGTC
CGCTTCGGAGGACGGTACCTGTCGACTTTGGGACCTAAGAGATCGAGAGA
GATGCTGTCCCTGCGAGGTCACTCCAGCGTGATCACAGACCTGGCCGTCA
GCCCCGATAACTCGATGCTCGTGAGCTCCTCCGAGGACCGCAATCTTCGC
GTCTGGGACCCGCGGACGGGGGCATCGCTCGCCGTCCTGCGCGGCCACGA
GGCACCGGTAAACCTCGTGCGCTTTGCGCCGGGAGACAGCGTCGCCATGT
CCGCTTCGGAGGACGGTACCTGTCGACTTTGGGACCTAAGAGATCGAGAG
AGCCTCATCACGGACGACGTGATTCCGATCGTGCTTCCTCACAAGAACCA
CGCGGGCAACAACATCCCCGTTAAGTGCCTCTCCGTGAGTCCCGCCGGCA
ACCTTATCGCCGCCGGCTGCGACGATGGCGCCGTGCGGGTGTGGGCCTAC
GGTGACGCCGACGATGATGCAGCATGGGGAAGCGGCAAGCACAACACCCG
CGGTGCCGGCAGAGATAAGTTCGGCGGTGGCCAGGTCTACAGGAGGGAGG
CGCCACAGCAGCAGCCCCGCCCGGCACCTCCACCTCCTGCCGCCGTGGAA
CCGCCCCAGGGGGATATTTCCAATGGGTTGGCAGCGGCAGTGACAGCAGC
AGCTGCATGGGGGGTCGCCGCCGGAAACCGGGGTGAAGCAGAGCGCGACG
CGAGCGTCTCGGGCTCGGCAGCGGGATCGGCTTTCACCAGGGCGTGGGAG
CGAGCCGGCAGTATGGGCCTGATGGTGGGAGCGCTCGGTGGCAACGATTT
GCCCGGTCTCCAGGGCGGGCAGGAGGCGGCGGTTGCTGCTGCTGCTGCTA
CTGTTGGAGAGGGCGATGTCGCCTCATCACGGACGACGTGATTCCGATCG
TGCTTCCTCACAAGAACCACGCGGGCAACAACATCCCCGTTAAGTGCCTC
TCCGTGAGTCCCGCCGGCAACCTTATCGCCGCCGGCTGCGACGATGGCGC
CGTGCGGGTGTGGGCCTACGGTGACGCCGACGATGATGCAGCATGGGGAA
GCGGCAAGCACAACACCCGCGGTGCCGGCAGAGATAAGTTCGGCGGTGGC
CAGGTCTACAGGAGGGAGGCGCCACAGCAGCAGCCCCGCCCGGCACCTCC
ACCTCCTGCCGCCGTGGAACCGCCCCAGGGGGATATTTCCAATGGGTTGG
CAGCGGCAGTGACAGCAGCAGCTGCATGGGGGGTCGCCGCCGGAAACCGG
GGTGAAGCAGAGCGCGACGCGAGCGTCTCGGGCTCGGCAGCGGGATCGGC
TTTCACCAGGGCGTGGGAGCGAGCCGGCAGTATGGGCCTGATGGTGGGAG
CGCTCGGTGGCAACGATTTGCCCGGTCTCCAGGGCGGGCAGGAGGCGGCG
GTTGCTGCTGCTGCTGCTACTGTTGGAGAGGGCGATGTCGGGCGAGGGAG
GGAGGGGGGAAGCGGCGCTGACGGAGCTGGAACCGCGGCCAAGGATAAGG
GGGGGCTTGAGGTTCGCCTGGGGACGATGATGTTCGGTGGCGAGGGAGGG
AGGGGGGAAGCGGCGCTGACGGAGCTGGAACCGCGGCCAAGGATAAGGGG
GGGCTTGAGGTTCGCCTGGGGACGATGATGTTCGGT
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