mRNA_H-elongata_contig116638.1304.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: D8LNB9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNB9_ECTSI) HSP 1 Score: 135 bits (339), Expect = 5.490e-38 Identity = 66/81 (81.48%), Postives = 69/81 (85.19%), Query Frame = 1
Query: 7 THKRYRKKGYTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
THKRYRKKGY+D VLNRTIAICRPCHSAVHRAHD LAERFTT EELL DE IGRFVAWA+KQR T D+ NNLLRYRR
Sbjct: 144 THKRYRKKGYSDAVLNRTIAICRPCHSAVHRAHDALALAERFTTVEELLADETIGRFVAWARKQRTTSVQDSRNNLLRYRR 224
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: A0A7R9U8X6_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U8X6_9STRA) HSP 1 Score: 97.1 bits (240), Expect = 2.800e-23 Identity = 48/83 (57.83%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 1 RVTHKRYRKKGYTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
R TH++YRKKG T E LN T ICRPCHSA+HR +D +TL F T E+LL DE I +FV WA KQR T D A N +YRR
Sbjct: 124 RETHRKYRKKGMTQEELNLTTKICRPCHSAIHRTYDNQTLGAHFNTVEKLLGDEAILKFVKWAAKQRPTNTDMAMNGTAKYRR 206
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: A0A2K3DDI0_CHLRE (Uncharacterized protein n=2 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DDI0_CHLRE) HSP 1 Score: 93.6 bits (231), Expect = 9.990e-22 Identity = 41/83 (49.40%), Postives = 59/83 (71.08%), Query Frame = 1
Query: 1 RVTHKRYRKKGYTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
R H +Y++K T E LNR + +CRPCHSA+HR +D +TLA ++T E LL+ E + +F+ WAQKQ+VT ++D +N RYRR
Sbjct: 146 RDVHAKYKRKALTAEELNRGVDVCRPCHSAIHRTYDNKTLAASYSTLEALLQSEPLQKFIRWAQKQKVTTREDMANPNFRYRR 228
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: A0A7S1U0G4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0G4_9STRA) HSP 1 Score: 90.9 bits (224), Expect = 3.510e-21 Identity = 43/83 (51.81%), Postives = 56/83 (67.47%), Query Frame = 1
Query: 1 RVTHKRYRKKGYTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
R TH++YRKKG + E LN ICRPCHS +H+ +D LA +T E+LL+D+ I RFV WA KQR T + A+NN +YRR
Sbjct: 94 RETHRKYRKKGLSQEFLNTCTMICRPCHSHIHKTYDNERLAAELSTVEKLLDDDAILRFVKWAAKQRTTSTEMAANNRAKYRR 176
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: A0A150GCJ7_GONPE (Uncharacterized protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150GCJ7_GONPE) HSP 1 Score: 89.0 bits (219), Expect = 4.780e-20 Identity = 43/83 (51.81%), Postives = 54/83 (65.06%), Query Frame = 1
Query: 1 RVTHKRYRKKGYTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
R H +Y+KKG E LN I ICRPCHSA+HR +D +TLA + T LL E + +FVAWA+KQ+VT D +N RYRR
Sbjct: 134 RDVHDKYKKKGLGTEQLNAGIDICRPCHSAIHRTYDNKTLAAHYYTLHRLLASEPLQKFVAWARKQKVTTASDITNPRFRYRR 216
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: A0A835WXC4_9CHLO (Uncharacterized protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WXC4_9CHLO) HSP 1 Score: 87.0 bits (214), Expect = 3.290e-19 Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 1
Query: 1 RVTHKRYRKKG--YTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
R H +Y+K+ + + LNR I ICRPCHSA+HR +D +TLA ++T E LL+ E + +F+ WAQKQ+VT ++D +N RYRR
Sbjct: 143 RDVHSKYKKRADLRSQQDLNRGIDICRPCHSAIHRTYDNKTLAASYSTLEALLQSEPLQKFIRWAQKQKVTTREDMANPNFRYRR 227
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: A0A383W3Z1_TETOB (Uncharacterized protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W3Z1_TETOB) HSP 1 Score: 84.0 bits (206), Expect = 2.000e-17 Identity = 38/84 (45.24%), Postives = 57/84 (67.86%), Query Frame = 1
Query: 1 RVTHKRYRKKGYTDEVLNRTIAICRPCHSAVHRA-HDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
R HK ++K+GY+ + L + +CRPCHSA+HRA D + LA ++T E L + E++ +F AWA++QRVT K D S+ +YRR
Sbjct: 241 RDVHKEFKKRGYSSDQLQAGLMVCRPCHSAIHRAVPDNKQLAAHYSTAEALSQHEEVAKFAAWARRQRVTSKVDVSSKHFKYRR 324
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: W7T1W2_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T1W2_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 2.580e-17 Identity = 43/83 (51.81%), Postives = 52/83 (62.65%), Query Frame = 1
Query: 1 RVTHKRYRKKGYTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
R HK K+G + + LN AICRPCHSAVHR +D TLA F T LL DE IG+FV WA KQR ++ N LL+Y+R
Sbjct: 141 RAMHKILLKQGMSQDELNICAAICRPCHSAVHRTYDNETLAINFYTVSALLADEKIGKFVRWASKQRGREQKMGHNPLLKYQR 223
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: A0A7S4C8S4_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4C8S4_9EUGL) HSP 1 Score: 74.7 bits (182), Expect = 8.120e-15 Identity = 41/82 (50.00%), Postives = 50/82 (60.98%), Query Frame = 1
Query: 7 THKRYRKKG-YTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
TH KKG ++ + + R I ICRPCHSA+H HD +TLA ++ T E LLE E I RF+ W KQRV K D L YRR
Sbjct: 106 THSDLLKKGTFSKDKICRGIWICRPCHSAIHSLHDNKTLAAQYNTLEALLELEQIQRFIKWVSKQRVRSKKDGQ---LHYRR 184
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Match: A0A7J7PRS8_9CHLO (Uncharacterized protein n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PRS8_9CHLO) HSP 1 Score: 73.9 bits (180), Expect = 1.380e-13 Identity = 35/84 (41.67%), Postives = 54/84 (64.29%), Query Frame = 1
Query: 1 RVTHKRYRKKGYTDEVLNRTIAICRPCHSAVHRAHD-ERTLAERFTTREELLEDEDIGRFVAWAQKQRVTKKDDASNNLLRYRR 249
R HK ++K G + E L + +CRPCHSA+HRA + LA ++T E + + E++ +F AWA++QRVT K D ++ +YRR
Sbjct: 312 RDVHKEFKKWGCSFEQLQAGLMVCRPCHSAIHRAVPVNKQLAMHYSTAEAISQHEEVAKFAAWARRQRVTSKGDVTSKHFKYRR 395 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116638.1304.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig116638.1304.1 >prot_H-elongata_contig116638.1304.1 ID=prot_H-elongata_contig116638.1304.1|Name=mRNA_H-elongata_contig116638.1304.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=84bp RVTHKRYRKKGYTDEVLNRTIAICRPCHSAVHRAHDERTLAERFTTREELback to top mRNA from alignment at H-elongata_contig116638:298..549+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig116638.1304.1 ID=mRNA_H-elongata_contig116638.1304.1|Name=mRNA_H-elongata_contig116638.1304.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=252bp|location=Sequence derived from alignment at H-elongata_contig116638:298..549+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig116638:298..549+ >mRNA_H-elongata_contig116638.1304.1 ID=mRNA_H-elongata_contig116638.1304.1|Name=mRNA_H-elongata_contig116638.1304.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=504bp|location=Sequence derived from alignment at H-elongata_contig116638:298..549+ (Himanthalia elongata Himel1 dioecious)back to top |