mRNA_H-elongata_contig116602.1302.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116602.1302.1
Unique NamemRNA_H-elongata_contig116602.1302.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116602.1302.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116602contigH-elongata_contig116602:638..1606 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size969
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116602.1302.1prot_H-elongata_contig116602.1302.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116602 652..1305 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929678.0488062-UTR-H-elongata_contig116602:637..6511622929678.0488062-UTR-H-elongata_contig116602:637..651Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116602 638..651 +
1691679116.1803823-UTR-H-elongata_contig116602:637..6511691679116.1803823-UTR-H-elongata_contig116602:637..651Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116602 638..651 +
1622929678.0854082-UTR-H-elongata_contig116602:1305..16061622929678.0854082-UTR-H-elongata_contig116602:1305..1606Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116602 1306..1606 +
1691679116.2037144-UTR-H-elongata_contig116602:1305..16061691679116.2037144-UTR-H-elongata_contig116602:1305..1606Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116602 1306..1606 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929678.0691526-CDS-H-elongata_contig116602:651..13051622929678.0691526-CDS-H-elongata_contig116602:651..1305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116602 652..1305 +
1691679116.188091-CDS-H-elongata_contig116602:651..13051691679116.188091-CDS-H-elongata_contig116602:651..1305Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116602 652..1305 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116602.1302.1

>prot_H-elongata_contig116602.1302.1 ID=prot_H-elongata_contig116602.1302.1|Name=mRNA_H-elongata_contig116602.1302.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=218bp
MLASRYHSAPSLLSGVFLGFSPPALFKIKDNPPCTSLSSSCYSVISAART
TVVLDKQHVPSVITQRPSSCSLQSARRCGCTSTCYSEPNHRSSLSCLRGG
GGDVEHVPHSASAAGADDTGNTTSTFVSAAAKTGLELQDKGSSLRAISER
QRDAVSSSTKGEAFGMALVTERSTATGGGRGHVMYSILADGTLQVARSEK
HRSSLVSMSIIHGLYGR*
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mRNA from alignment at H-elongata_contig116602:638..1606+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116602.1302.1 ID=mRNA_H-elongata_contig116602.1302.1|Name=mRNA_H-elongata_contig116602.1302.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=969bp|location=Sequence derived from alignment at H-elongata_contig116602:638..1606+ (Himanthalia elongata Himel1 dioecious)
GCTCTTAGCGCGCGATGCTCGCAAGCAGGTACCACTCAGCGCCAAGCTTA
CTGAGCGGGGTATTTCTCGGGTTTTCGCCTCCTGCGCTGTTCAAGATTAA
GGACAATCCTCCTTGCACGAGTTTATCCTCATCGTGCTACTCTGTGATAA
GCGCAGCGCGCACTACTGTTGTTCTCGATAAACAACATGTTCCGTCGGTT
ATCACTCAACGACCGTCGTCCTGCAGTTTGCAGAGTGCTCGTCGCTGCGG
TTGCACAAGCACATGTTACTCTGAACCAAATCATCGTAGCAGCCTCTCCT
GTCTAAGGGGTGGGGGTGGTGACGTTGAACATGTGCCTCATTCGGCATCA
GCAGCAGGAGCAGATGACACAGGAAACACTACCTCAACATTTGTCAGTGC
AGCAGCCAAAACGGGTCTTGAGCTCCAAGATAAGGGATCGTCGCTACGGG
CGATCTCCGAGCGACAAAGAGACGCCGTCTCTTCATCGACAAAGGGAGAA
GCATTCGGGATGGCCCTTGTCACGGAGCGATCGACTGCCACCGGCGGGGG
TAGAGGCCACGTGATGTACAGTATACTCGCCGATGGCACCCTCCAGGTTG
CCCGTTCGGAGAAGCATCGCTCGTCTTTGGTGAGCATGAGCATCATCCAC
GGGCTCTATGGAAGATGACCCTAAAATAAAGATTTGGAGGGCAGCACGAT
TTTTTCCCGCATGAGAGGGTGCCTGAAGTTTTCAAAGAACTGGAGGGATT
CATGTCAACCGGGGGGATGACTTTTTAGGGCATCATCTTTAGAAGCCCAG
ACAAAACGGGACGCCAACTGAGAGTTCGCGCATTGGCGTGAAAATGGCTG
GGTACCCGGGAACTACCCCAAGGAAAGCTTGGTTCGAAGGGGGACATATA
AATTGCCAGAATTGAGTTGAAAATAGCTGAAAGTGTTGGCACGTATACCC
GGGGATGGTTCGTCTAAAT
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Coding sequence (CDS) from alignment at H-elongata_contig116602:638..1606+

>mRNA_H-elongata_contig116602.1302.1 ID=mRNA_H-elongata_contig116602.1302.1|Name=mRNA_H-elongata_contig116602.1302.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1308bp|location=Sequence derived from alignment at H-elongata_contig116602:638..1606+ (Himanthalia elongata Himel1 dioecious)
ATGCTCGCAAGCAGGTACCACTCAGCGCCAAGCTTACTGAGCGGGGTATT
TCTCGGGTTTTCGCCTCCTGCGCTGTTCAAGATTAAGGACAATCCTCCTT
GCACGAGTTTATCCTCATCGTGCTACTCTGTGATAAGCGCAGCGCGCACT
ACTGTTGTTCTCGATAAACAACATGTTCCGTCGGTTATCACTCAACGACC
GTCGTCCTGCAGTTTGCAGAGTGCTCGTCGCTGCGGTTGCACAAGCACAT
GTTACTCTGAACCAAATCATCGTAGCAGCCTCTCCTGTCTAAGGGGTGGG
GGTGGTGACGTTGAACATGTGCCTCATTCGGCATCAGCAGCAGGAGCAGA
TGACACAGGAAACACTACCTCAACATTTGTCAGTGCAGCAGCCAAAACGG
GTCTTGAGCTCCAAGATAAGGGATCGTCGCTACGGGCGATCTCCGAGCGA
CAAAGAGACGCCGTCTCTTCATCGACAAAGGGAGAAGCATTCGGGATGGC
CCTTGTCACGGAGCGATCGACTGCCACCGGCGGGGGTAGAGGCCACGTGA
TGTACAGTATACTCGCCGATGGCACCCTCCAGGTTGCCCGTTCGGAGAAG
CATCGCTCGTCTTTGGTGAGCATGAGCATCATCCACGGGCTCTATGGAAG
ATGAATGCTCGCAAGCAGGTACCACTCAGCGCCAAGCTTACTGAGCGGGG
TATTTCTCGGGTTTTCGCCTCCTGCGCTGTTCAAGATTAAGGACAATCCT
CCTTGCACGAGTTTATCCTCATCGTGCTACTCTGTGATAAGCGCAGCGCG
CACTACTGTTGTTCTCGATAAACAACATGTTCCGTCGGTTATCACTCAAC
GACCGTCGTCCTGCAGTTTGCAGAGTGCTCGTCGCTGCGGTTGCACAAGC
ACATGTTACTCTGAACCAAATCATCGTAGCAGCCTCTCCTGTCTAAGGGG
TGGGGGTGGTGACGTTGAACATGTGCCTCATTCGGCATCAGCAGCAGGAG
CAGATGACACAGGAAACACTACCTCAACATTTGTCAGTGCAGCAGCCAAA
ACGGGTCTTGAGCTCCAAGATAAGGGATCGTCGCTACGGGCGATCTCCGA
GCGACAAAGAGACGCCGTCTCTTCATCGACAAAGGGAGAAGCATTCGGGA
TGGCCCTTGTCACGGAGCGATCGACTGCCACCGGCGGGGGTAGAGGCCAC
GTGATGTACAGTATACTCGCCGATGGCACCCTCCAGGTTGCCCGTTCGGA
GAAGCATCGCTCGTCTTTGGTGAGCATGAGCATCATCCACGGGCTCTATG
GAAGATGA
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