mRNA_H-elongata_contig116417.1291.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116417.1291.1
Unique NamemRNA_H-elongata_contig116417.1291.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: D8LGM6_ECTSI (RNA polymerase, sigma 70 subunit, RpoD subfamily n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGM6_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 3.030e-38
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 1
Query:    1 QESLQVCSSAKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFKVCGGGR 246
            +ESL+V  +AK+ M+ ANMRMVISIARKYQ++GVPL DLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQA+FKV  G R
Sbjct:   73 EESLKVGGAAKKTMVEANMRMVISIARKYQHLGVPLTDLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAIFKVRAGRR 154          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: A0A6H5LBV0_9PHAE (RNA_pol_sigma70 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LBV0_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.130e-35
Identity = 64/76 (84.21%), Postives = 72/76 (94.74%), Query Frame = 1
Query:    1 QESLQVCSSAKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFK 228
            +ESL+VC +AK+ M+ ANMRMVISIARKYQ++GVPL DLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQA+FK
Sbjct:  331 EESLKVCGAAKKTMVEANMRMVISIARKYQHLGVPLTDLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAIFK 406          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: A0A7S2Y444_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2Y444_9STRA)

HSP 1 Score: 105 bits (263), Expect = 7.700e-28
Identity = 47/67 (70.15%), Postives = 59/67 (88.06%), Query Frame = 1
Query:   28 AKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFK 228
            AK+ M+++NMR+V+SIARKY N+GV L DL+QEGSLGL RA EKFDP +GFK STY++WWIQQAVF+
Sbjct:    8 AKQTMVQSNMRLVVSIARKYMNVGVSLHDLVQEGSLGLSRAAEKFDPLKGFKFSTYASWWIQQAVFR 74          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: A0A835YXH6_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXH6_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.060e-27
Identity = 47/71 (66.20%), Postives = 61/71 (85.92%), Query Frame = 1
Query:   19 CSSAKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFKV 231
            C  AK AM+ +NMR+VI++A++Y  MGVPL+DL+QEGSLGL+RA EK+DP +GFK STY+AWWIQQA+FK 
Sbjct:  142 CLHAKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPAKGFKFSTYAAWWIQQAIFKA 212          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: A0A1Z5JZN1_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JZN1_FISSO)

HSP 1 Score: 112 bits (280), Expect = 4.130e-27
Identity = 50/75 (66.67%), Postives = 63/75 (84.00%), Query Frame = 1
Query:    4 ESLQVCSSAKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFK 228
            E +  C  AK+ M+++NMR+V+SIARKY N+GV L DLIQEGSLGL RA EKFDP++GFK STY++WWIQQAVF+
Sbjct:  375 ELMMTCREAKQKMVQSNMRLVVSIARKYSNVGVGLQDLIQEGSLGLSRAAEKFDPKKGFKFSTYASWWIQQAVFR 449          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: A0A835ZEC7_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEC7_9STRA)

HSP 1 Score: 107 bits (268), Expect = 3.310e-26
Identity = 44/68 (64.71%), Postives = 61/68 (89.71%), Query Frame = 1
Query:   28 AKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFKV 231
            AK AM+ +NMR+VI++A++Y  MGVPL+DL+QEGSLGL+RA EK+DP++GF+ STY+AWWIQQA++K 
Sbjct:  123 AKHAMVSSNMRLVIAVAKRYGRMGVPLSDLVQEGSLGLIRAAEKYDPDKGFRFSTYAAWWIQQAIYKA 190          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: A0A7S2XUY2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUY2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 3.410e-26
Identity = 49/74 (66.22%), Postives = 61/74 (82.43%), Query Frame = 1
Query:    1 QESLQVCSSAKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAV 222
            Q+ L +C  A+  M+  NMR+VISIA+KYQN+GV L DLIQEG++GLVRA EKFDP+RGFK STY+AWWI+ AV
Sbjct:  157 QDELILCHEARSTMVEHNMRLVISIAKKYQNLGVSLQDLIQEGAMGLVRATEKFDPKRGFKFSTYAAWWIRHAV 230          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: B7FPT1_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FPT1_PHATC)

HSP 1 Score: 107 bits (266), Expect = 3.600e-26
Identity = 47/75 (62.67%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    4 ESLQVCSSAKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFK 228
            E +     AK+ M+++NMR+V+SIARKY N+GV L DL+QEGSLGL RA EKF+P++GFK STY++WWIQQAVF+
Sbjct:   63 EMVMTSREAKQRMVQSNMRLVVSIARKYSNVGVSLQDLVQEGSLGLSRAAEKFEPKKGFKFSTYASWWIQQAVFR 137          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: A0A7S2AXT5_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2AXT5_9STRA)

HSP 1 Score: 108 bits (270), Expect = 9.770e-26
Identity = 49/67 (73.13%), Postives = 60/67 (89.55%), Query Frame = 1
Query:   28 AKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFK 228
            AK+ MI +NMR+VISIAR+YQ++GV L DLIQEGSLGL+RA EKFDP RGF+ STY++WWIQQAVF+
Sbjct:  261 AKDVMINSNMRLVISIARRYQHLGVSLQDLIQEGSLGLIRASEKFDPSRGFRFSTYASWWIQQAVFR 327          
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.160e-25
Identity = 49/69 (71.01%), Postives = 60/69 (86.96%), Query Frame = 1
Query:   25 SAKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRAVEKFDPERGFKLSTYSAWWIQQAVFKV 231
            SAK+AMI +N+R+VISIA++YQ  G+ L DLIQEGSLGLVRAVEKFDPE+GFK STYS WWI+QA+ + 
Sbjct:  231 SAKKAMISSNLRLVISIAKRYQKRGLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRA 299          
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116417.1291.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGM6_ECTSI3.030e-3880.49RNA polymerase, sigma 70 subunit, RpoD subfamily n... [more]
A0A6H5LBV0_9PHAE1.130e-3584.21RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A7S2Y444_9STRA7.700e-2870.15Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A835YXH6_9STRA2.060e-2766.20RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A1Z5JZN1_FISSO4.130e-2766.67Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A835ZEC7_9STRA3.310e-2664.71RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A7S2XUY2_9STRA3.410e-2666.22Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
B7FPT1_PHATC3.600e-2662.67Predicted protein n=2 Tax=Phaeodactylum tricornutu... [more]
A0A7S2AXT5_9STRA9.770e-2673.13Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2WX55_9STRA1.160e-2571.01Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116417contigH-elongata_contig116417:1665..1910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score106.7
Seed ortholog evalue5.3e-21
Seed eggNOG ortholog2850.Phatr9312
EggNOG free text desc.Sigma-70 region 3
EggNOG OGs2QV7Q@2759,2XE8Y@2836,COG0568@1
COG Functional cat.K
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase sigma-70
Ec32 orthologEc-10_002800.1
Exons1
Model size246
Cds size246
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929676.5839403-CDS-H-elongata_contig116417:1664..19101622929676.5839403-CDS-H-elongata_contig116417:1664..1910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116417 1665..1910 -
1691679115.6350002-CDS-H-elongata_contig116417:1664..19101691679115.6350002-CDS-H-elongata_contig116417:1664..1910Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116417 1665..1910 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116417.1291.1prot_H-elongata_contig116417.1291.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116417 1665..1910 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116417.1291.1

>prot_H-elongata_contig116417.1291.1 ID=prot_H-elongata_contig116417.1291.1|Name=mRNA_H-elongata_contig116417.1291.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=82bp
QESLQVCSSAKEAMIRANMRMVISIARKYQNMGVPLADLIQEGSLGLVRA
VEKFDPERGFKLSTYSAWWIQQAVFKVCGGGR
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mRNA from alignment at H-elongata_contig116417:1665..1910-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116417.1291.1 ID=mRNA_H-elongata_contig116417.1291.1|Name=mRNA_H-elongata_contig116417.1291.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=246bp|location=Sequence derived from alignment at H-elongata_contig116417:1665..1910- (Himanthalia elongata Himel1 dioecious)
CAGGAGAGCCTACAGGTGTGCAGTTCCGCCAAGGAGGCCATGATCCGCGC CAACATGCGGATGGTGATATCGATCGCCCGCAAGTACCAAAACATGGGGG TCCCCCTGGCAGACCTTATCCAGGAAGGATCTCTGGGACTCGTGCGTGCC GTCGAGAAGTTCGACCCCGAGCGGGGTTTCAAGCTCAGCACATACTCGGC GTGGTGGATCCAGCAGGCGGTTTTCAAGGTGTGCGGAGGCGGTCGA
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Coding sequence (CDS) from alignment at H-elongata_contig116417:1665..1910-

>mRNA_H-elongata_contig116417.1291.1 ID=mRNA_H-elongata_contig116417.1291.1|Name=mRNA_H-elongata_contig116417.1291.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=492bp|location=Sequence derived from alignment at H-elongata_contig116417:1665..1910- (Himanthalia elongata Himel1 dioecious)
CAGGAGAGCCTACAGGTGTGCAGTTCCGCCAAGGAGGCCATGATCCGCGC
CAACATGCGGATGGTGATATCGATCGCCCGCAAGTACCAAAACATGGGGG
TCCCCCTGGCAGACCTTATCCAGGAAGGATCTCTGGGACTCGTGCGTGCC
GTCGAGAAGTTCGACCCCGAGCGGGGTTTCAAGCTCAGCACATACTCGGC
GTGGTGGATCCAGCAGGCGGTTTTCAAGGTGTGCGGAGGCGGTCGACAGG
AGAGCCTACAGGTGTGCAGTTCCGCCAAGGAGGCCATGATCCGCGCCAAC
ATGCGGATGGTGATATCGATCGCCCGCAAGTACCAAAACATGGGGGTCCC
CCTGGCAGACCTTATCCAGGAAGGATCTCTGGGACTCGTGCGTGCCGTCG
AGAAGTTCGACCCCGAGCGGGGTTTCAAGCTCAGCACATACTCGGCGTGG
TGGATCCAGCAGGCGGTTTTCAAGGTGTGCGGAGGCGGTCGA
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