mRNA_H-elongata_contig11639.1290.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig11639.1290.1 vs. uniprot
Match: A0A6H5KP87_9PHAE (Endo/exonuclease/phosphatase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP87_9PHAE) HSP 1 Score: 115 bits (289), Expect = 4.640e-29 Identity = 80/181 (44.20%), Postives = 100/181 (55.25%), Query Frame = 1
Query: 7 LDVLNIYDRLEYDVIGLQKTRRSGHLAFNQAGYGEC--GGENGGKKRQG--GVGLTIRT----SITRAAHPPEFRSDCLLKVTLELRGRAKAVTFVVVYAPTETQ------NASNKHAFWTNLDRAVEEVPRHDQLFVLMDANACTGMREKGQVGSKDRKILGAYGRDTLNDNGELLLSFA 507
+ V+ I + DVIGLQ+TRR+G A GY G G K ++G GVG+ I+ S+ E S L+KV L++ GR VTFVV YAPTET + + K +FWT LD + EV D L VLMDANA TG R G D KI+GAYGRD +N+NGE LL A
Sbjct: 1 MTVMQICAATDCDVIGLQETRRAGQGAITHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWDSVGEGGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETARNTAGGDVNAKDSFWTALDAEIREVHSRDHLVVLMDANARTGRRRDGCC---DAKIMGAYGRDIMNNNGERLLGLA 177
BLAST of mRNA_H-elongata_contig11639.1290.1 vs. uniprot
Match: A0A6H5K9G5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9G5_9PHAE) HSP 1 Score: 118 bits (296), Expect = 7.410e-28 Identity = 66/172 (38.37%), Postives = 97/172 (56.40%), Query Frame = 1
Query: 1 RALDVLNIYDRLEYDVIGLQKTRRSGHLAFNQAGYG--ECGGENGGKKRQGGVGLTIRTSITRAA-HPPEFRSDCLLKVTLELRGRAKAVTFVVVYAPTETQNASNKHAFWTNLDRAVEEVPRHDQLFVLMDANACTGMREKGQVGSKDRKILGAYGRDTLNDNGELLLSFA 507
RA VL+ + + +GLQ+ RR G F +G+ CG + GG GVG+ + ++ +A+ + E+ + L+ + E+ G AV FV YAPT+ A +K FW LD V +P + LFVLMDANA TG G + ++ + +G YGR+ LNDNG LLL+FA
Sbjct: 64 RADKVLHEAAKQDISFVGLQEVRRPGRTEFTASGFRVFTCGTDKGGTH---GVGIAVEEALCKASQYTTEYVDERLMAMRFEMTGHRGAVNFVAAYAPTDVATADSKRMFWEKLDSLVRRIPAKEYLFVLMDANAQTG----GGIAGENERTMGEYGRNELNDNGRLLLTFA 228
BLAST of mRNA_H-elongata_contig11639.1290.1 vs. uniprot
Match: A0A6H5K3U7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3U7_9PHAE) HSP 1 Score: 112 bits (280), Expect = 1.300e-27 Identity = 62/156 (39.74%), Postives = 90/156 (57.69%), Query Frame = 1
Query: 49 IGLQKTRRSGHLAFNQAGYG--ECGGENGGKKRQGGVGLTIRTSITRAA-HPPEFRSDCLLKVTLELRGRAKAVTFVVVYAPTETQNASNKHAFWTNLDRAVEEVPRHDQLFVLMDANACTGMREKGQVGSKDRKILGAYGRDTLNDNGELLLSFA 507
+GLQ+ R+ G F +G+ CG + GG GVG+T+ ++ +A+ + E+ + L+ + E+ G AV FV +APT+ A +K FW LD V VP + LFVLMDANA TG G + ++ +G YGR+ LNDNG LLL+FA
Sbjct: 19 VGLQEVRKPGRTEFTASGFRVFTCGTDKGGTH---GVGITVEEALCKASQYTMEYVDERLMAMRFEMTGHRGAVNFVAAHAPTDVATADSKRMFWEKLDSLVRRVPAKECLFVLMDANAQTG----GGIAGENEGTMGEYGRNELNDNGRLLLTFA 167
BLAST of mRNA_H-elongata_contig11639.1290.1 vs. uniprot
Match: A0A6H5KQZ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ7_9PHAE) HSP 1 Score: 117 bits (294), Expect = 1.440e-27 Identity = 66/172 (38.37%), Postives = 96/172 (55.81%), Query Frame = 1
Query: 1 RALDVLNIYDRLEYDVIGLQKTRRSGHLAFNQAGYG--ECGGENGGKKRQGGVGLTIRTSITRAA-HPPEFRSDCLLKVTLELRGRAKAVTFVVVYAPTETQNASNKHAFWTNLDRAVEEVPRHDQLFVLMDANACTGMREKGQVGSKDRKILGAYGRDTLNDNGELLLSFA 507
RA VL+ + +GLQ+ RR G F +G+ CG + GG GVG+ + ++ +++ + E+ + L+ + E+ G AVTFV YAPT+ +KH FW LD V P + LFVLMDANA TG G + ++ + +G YGR+ LNDNG LLL+FA
Sbjct: 94 RADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTDKGGTH---GVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG----GGIAGENERTMGEYGRNELNDNGRLLLTFA 258
BLAST of mRNA_H-elongata_contig11639.1290.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE) HSP 1 Score: 117 bits (294), Expect = 1.670e-27 Identity = 66/172 (38.37%), Postives = 97/172 (56.40%), Query Frame = 1
Query: 1 RALDVLNIYDRLEYDVIGLQKTRRSGHLAFNQAGYG--ECGGENGGKKRQGGVGLTIRTSITRAA-HPPEFRSDCLLKVTLELRGRAKAVTFVVVYAPTETQNASNKHAFWTNLDRAVEEVPRHDQLFVLMDANACTGMREKGQVGSKDRKILGAYGRDTLNDNGELLLSFA 507
RA VL+ + +GLQ+ RR G F +G+ CG + GG GVG+ + ++ +++ + E+ + L+ + E+ G AVTFV YAPT+ +KH FW LD V +P + LFVLMDANA TG G + ++ +G YGR+ LN+NGELLL+FA
Sbjct: 326 RADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTDKGGTH---GVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRIPAKEYLFVLMDANAQTG----GGIAGENEGTMGEYGRNELNENGELLLTFA 490
BLAST of mRNA_H-elongata_contig11639.1290.1 vs. uniprot
Match: A0A6H5JMM5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMM5_9PHAE) HSP 1 Score: 110 bits (276), Expect = 3.760e-27 Identity = 79/181 (43.65%), Postives = 99/181 (54.70%), Query Frame = 1
Query: 7 LDVLNIYDRLEYDVIGLQKTRRSGHLAFNQAGYGEC--GGENGGKKRQG--GVGLTIRT----SITRAAHPPEFRSDCLLKVTLELRGRAKAVTFVVVYAPTETQ------NASNKHAFWTNLDRAVEEVPRHDQLFVLMDANACTGMREKGQVGSKDRKILGAYGRDTLNDNGELLLSFA 507
+ V+ I DVIGLQ+TRR G + GY G G K ++G GVG I+ S+ E S L+KV L++ GR VTFVV YAPTET + + K +FWT LD A+ EV D L VLMDANA TG R +VG D K++GAYGRD + +NGE LL A
Sbjct: 1 MTVMQICSPTSCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGRAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFVVGYAPTETVRTTAGGDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRR---RVGCCDGKMMGAYGRDIMTNNGERLLGLA 177
BLAST of mRNA_H-elongata_contig11639.1290.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE) HSP 1 Score: 116 bits (291), Expect = 4.150e-27 Identity = 66/172 (38.37%), Postives = 96/172 (55.81%), Query Frame = 1
Query: 1 RALDVLNIYDRLEYDVIGLQKTRRSGHLAFNQAGYG--ECGGENGGKKRQGGVGLTIRTSITRAA-HPPEFRSDCLLKVTLELRGRAKAVTFVVVYAPTETQNASNKHAFWTNLDRAVEEVPRHDQLFVLMDANACTGMREKGQVGSKDRKILGAYGRDTLNDNGELLLSFA 507
RA VL+ + +GLQ+ RR G F +G+ CG + GG GVG+ + ++ +++ + E+ + L+ + E+ G AVTFV YAPT+ +KH FW LD V P + LFVLMDANA TG G + ++ +G YGR+ LN+NGELLL+FA
Sbjct: 39 RADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTDKGGTH---GVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG----GGIAGENEGTMGEYGRNELNENGELLLTFA 203
BLAST of mRNA_H-elongata_contig11639.1290.1 vs. uniprot
Match: A0A6H5K3Q1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3Q1_9PHAE) HSP 1 Score: 116 bits (290), Expect = 4.270e-27 Identity = 80/182 (43.96%), Postives = 100/182 (54.95%), Query Frame = 1
Query: 4 ALDVLNIYDRLEYDVIGLQKTRRSGHLAFNQAGYGEC--GGENGGKKRQG--GVGLTIRT----SITRAAHPPEFRSDCLLKVTLELRGRAKAVTFVVVYAPTETQNASN------KHAFWTNLDRAVEEVPRHDQLFVLMDANACTGMREKGQVGSKDRKILGAYGRDTLNDNGELLLSFA 507
+ V+ I DVIGLQ+TRR+G + GY G G K ++G GVG+ I+ S+ E S L+KV L++ GR VTF+V YAPTET + K +FWT LD A+ EV D L VLMDANA TG R KG D KI+GAYGRD +N+NGE LL A
Sbjct: 197 VMTVMQICSATGCDVIGLQETRRAGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKEAMWESVGEEGRTVECISPRLMKVRLQI-GRTCGVTFLVGYAPTETVRTTEGCDVNAKDSFWTALDAAIREVHSRDHLVVLMDANARTGRRRKGCC---DAKIMGAYGRDIMNNNGERLLGLA 374
BLAST of mRNA_H-elongata_contig11639.1290.1 vs. uniprot
Match: A0A6H5JLM6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLM6_9PHAE) HSP 1 Score: 116 bits (291), Expect = 4.280e-27 Identity = 66/172 (38.37%), Postives = 96/172 (55.81%), Query Frame = 1
Query: 1 RALDVLNIYDRLEYDVIGLQKTRRSGHLAFNQAGYG--ECGGENGGKKRQGGVGLTIRTSITRAA-HPPEFRSDCLLKVTLELRGRAKAVTFVVVYAPTETQNASNKHAFWTNLDRAVEEVPRHDQLFVLMDANACTGMREKGQVGSKDRKILGAYGRDTLNDNGELLLSFA 507
RA VL+ + +GLQ+ RR G F +G+ CG + GG GVG+ + ++ +++ + E+ + L+ + E+ G AVTFV YAPT+ +KH FW LD V P + LFVLMDANA TG G + ++ +G YGR+ LN+NGELLL+FA
Sbjct: 530 RADSVLHEAAKQGISFVGLQEVRRPGRTEFAASGFRVFTCGTDKGGTH---GVGIAVEETLCKSSQYTTEYVDERLMAMRFEMMGHRGAVTFVAAYAPTDVATTESKHMFWEKLDSLVRRTPAKEYLFVLMDANAQTG----GGIAGENEGTMGEYGRNELNENGELLLTFA 694
BLAST of mRNA_H-elongata_contig11639.1290.1 vs. uniprot
Match: A0A6H5L660_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L660_9PHAE) HSP 1 Score: 113 bits (283), Expect = 5.370e-27 Identity = 76/182 (41.76%), Postives = 98/182 (53.85%), Query Frame = 1
Query: 4 ALDVLNIYDRLEYDVIGLQKTRRSGHLAFNQAGYGEC--GGENGGKKRQG--GVGLTIRTSITRAAHPPEFRSDC----LLKVTLELRGRAKAVTFVVVYAPTETQNASN------KHAFWTNLDRAVEEVPRHDQLFVLMDANACTGMREKGQVGSKDRKILGAYGRDTLNDNGELLLSFA 507
+ V+ I DVIGLQ+TRR G + GY G G K ++G GVG+ I+ ++ + + +C L+KV L + GR +TFVV YAPTET + K +FWT LD + EV HD L VLMDANA TG R G D KI+G YGRD +N+NGE LL A
Sbjct: 170 VMTVMQICSATGCDVIGLQETRREGQGSIAHDGYVIIWSGARAGTKDKRGVHGVGIAIKETMWESVGEEGRKVECIGPRLMKVRLRI-GRTCGITFVVRYAPTETVRTTAGGDINAKDSFWTALDAVIREVHSHDHLVVLMDANARTGRRRDGCC---DAKIMGVYGRDIMNNNGERLLGLA 347 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11639.1290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig11639.1290.1 >prot_H-elongata_contig11639.1290.1 ID=prot_H-elongata_contig11639.1290.1|Name=mRNA_H-elongata_contig11639.1290.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=169bp RALDVLNIYDRLEYDVIGLQKTRRSGHLAFNQAGYGECGGENGGKKRQGGback to top mRNA from alignment at H-elongata_contig11639:7..528- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig11639.1290.1 ID=mRNA_H-elongata_contig11639.1290.1|Name=mRNA_H-elongata_contig11639.1290.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=522bp|location=Sequence derived from alignment at H-elongata_contig11639:7..528- (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig11639:7..528- >mRNA_H-elongata_contig11639.1290.1 ID=mRNA_H-elongata_contig11639.1290.1|Name=mRNA_H-elongata_contig11639.1290.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1014bp|location=Sequence derived from alignment at H-elongata_contig11639:7..528- (Himanthalia elongata Himel1 dioecious)back to top |