mRNA_H-elongata_contig11637.1287.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig11637.1287.1
Unique NamemRNA_H-elongata_contig11637.1287.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig11637.1287.1 vs. uniprot
Match: A0A8D8J7U3_CULPI (Protein transport protein Sec61 subunit alpha-like 1 (Fragment) n=1 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8J7U3_CULPI)

HSP 1 Score: 86.3 bits (212), Expect = 7.390e-16
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 ATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLIITRPDKV 132
            ATNICETI+WKAFSPTT+NTGRGTEFEGAIIALFHL+ TR DKV
Sbjct:   98 ATNICETIVWKAFSPTTVNTGRGTEFEGAIIALFHLLATRTDKV 141
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BLAST of mRNA_H-elongata_contig11637.1287.1 vs. uniprot
Match: A0A8D0X408_PIG (Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9823 RepID=A0A8D0X408_PIG)

HSP 1 Score: 86.3 bits (212), Expect = 9.340e-16
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 ATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLIITRPDKV 132
            ATNICETI+WKAFSPTTINTGRGTEFEGA+IALFHL+ TR DKV
Sbjct:   61 ATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKV 104
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BLAST of mRNA_H-elongata_contig11637.1287.1 vs. uniprot
Match: A0A6H5L214_9PHAE (Plug_translocon domain-containing protein n=3 Tax=PX clade TaxID=569578 RepID=A0A6H5L214_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.480e-15
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:    1 ATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLIITRPDK 129
            ATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHL+ITRPDK
Sbjct:  183 ATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLMITRPDK 225
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BLAST of mRNA_H-elongata_contig11637.1287.1 vs. uniprot
Match: A0A1J4MIY9_9CRYT (Plug_translocon domain-containing protein n=7 Tax=Cryptosporidium TaxID=5806 RepID=A0A1J4MIY9_9CRYT)

HSP 1 Score: 90.1 bits (222), Expect = 1.980e-15
Identity = 39/45 (86.67%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 ATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLIITRPDKVS 135
            ATNICETI+WKAFSPTTINTGRGTEFEGA+IALFHL+ T+PDK+S
Sbjct:  187 ATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLFTKPDKIS 231
[Close]
BLAST of mRNA_H-elongata_contig11637.1287.1 vs. uniprot
Match: H7C1S8_HUMAN (Protein transport protein Sec61 subunit alpha isoform 2 (Fragment) n=3 Tax=Hominidae TaxID=9604 RepID=H7C1S8_HUMAN)

HSP 1 Score: 86.3 bits (212), Expect = 2.000e-15
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 ATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLIITRPDKV 132
            ATNICETI+WKAFSPTTINTGRGTEFEGA+IALFHL+ TR DKV
Sbjct:   66 ATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKV 109
[Close]
BLAST of mRNA_H-elongata_contig11637.1287.1 vs. uniprot
Match: A0A093CSY6_TAUER (Protein transport protein Sec61 subunit alpha-like 1 (Fragment) n=1 Tax=Tauraco erythrolophus TaxID=121530 RepID=A0A093CSY6_TAUER)

HSP 1 Score: 86.3 bits (212), Expect = 2.630e-15
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 ATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLIITRPDKV 132
            ATNICETI+WKAFSPTTINTGRGTEFEGA+IALFHL+ TR DKV
Sbjct:  167 ATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKV 210
[Close]
BLAST of mRNA_H-elongata_contig11637.1287.1 vs. uniprot
Match: A0A6G3MJA3_HENSL (Protein transport protein Sec61 subunit alpha (Trinotate prediction) (Fragment) n=1 Tax=Henneguya salminicola TaxID=69463 RepID=A0A6G3MJA3_HENSL)

HSP 1 Score: 82.8 bits (203), Expect = 2.950e-15
Identity = 37/44 (84.09%), Postives = 41/44 (93.18%), Query Frame = 1 
Query:    1 ATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLIITRPDKV 132
            ATNICETI+WKAFSP T NTGRGTEFEGAIIALFHL++TR D+V
Sbjct:   51 ATNICETIVWKAFSPATFNTGRGTEFEGAIIALFHLMLTRKDRV 94
[Close]
BLAST of mRNA_H-elongata_contig11637.1287.1 vs. uniprot
Match: A0A8J2MYS0_COTCN (Similar to Sec61a2: Protein transport protein Sec61 subunit alpha isoform 2 (Mus musculus) n=1 Tax=Cotesia congregata TaxID=51543 RepID=A0A8J2MYS0_COTCN)

HSP 1 Score: 86.7 bits (213), Expect = 4.070e-15
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 ATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLIITRPDKV 132
            ATNICETI+WKAFSP T+NTGRGTEFEGAIIALFHL+ T+PDKV
Sbjct:  184 ATNICETIVWKAFSPATVNTGRGTEFEGAIIALFHLVATKPDKV 227
[Close]
BLAST of mRNA_H-elongata_contig11637.1287.1 vs. uniprot
Match: A0A7S3UM98_OXYMA (Hypothetical protein (Fragment) n=2 Tax=Oxyrrhis marina TaxID=2969 RepID=A0A7S3UM98_OXYMA)

HSP 1 Score: 82.4 bits (202), Expect = 4.360e-15
Identity = 34/45 (75.56%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 ATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLIITRPDKVS 135
            ATNICE+I+WKAFSPTT+N+G+GTEFEGA+IALFH+++T+ DKVS
Sbjct:   64 ATNICESIVWKAFSPTTLNSGKGTEFEGALIALFHMLVTKTDKVS 108
[Close]
BLAST of mRNA_H-elongata_contig11637.1287.1 vs. uniprot
Match: A0A1U7RGR0_MESAU (protein transport protein Sec61 subunit alpha-like n=1 Tax=Mesocricetus auratus TaxID=10036 RepID=A0A1U7RGR0_MESAU)

HSP 1 Score: 86.3 bits (212), Expect = 4.440e-15
Identity = 39/44 (88.64%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 ATNICETIIWKAFSPTTINTGRGTEFEGAIIALFHLIITRPDKV 132
            ATNICETI+WKAFSPTTINTGRGTEFEGA+IALFHL+ TR DKV
Sbjct:  123 ATNICETIVWKAFSPTTINTGRGTEFEGAVIALFHLLATRTDKV 166
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig11637.1287.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8D8J7U3_CULPI7.390e-1688.64Protein transport protein Sec61 subunit alpha-like... [more]
A0A8D0X408_PIG9.340e-1688.64Uncharacterized protein n=1 Tax=Sus scrofa TaxID=9... [more]
A0A6H5L214_9PHAE1.480e-1597.67Plug_translocon domain-containing protein n=3 Tax=... [more]
A0A1J4MIY9_9CRYT1.980e-1586.67Plug_translocon domain-containing protein n=7 Tax=... [more]
H7C1S8_HUMAN2.000e-1588.64Protein transport protein Sec61 subunit alpha isof... [more]
A0A093CSY6_TAUER2.630e-1588.64Protein transport protein Sec61 subunit alpha-like... [more]
A0A6G3MJA3_HENSL2.950e-1584.09Protein transport protein Sec61 subunit alpha (Tri... [more]
A0A8J2MYS0_COTCN4.070e-1586.36Similar to Sec61a2: Protein transport protein Sec6... [more]
A0A7S3UM98_OXYMA4.360e-1575.56Hypothetical protein (Fragment) n=2 Tax=Oxyrrhis m... [more]
A0A1U7RGR0_MESAU4.440e-1588.64protein transport protein Sec61 subunit alpha-like... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig11637contigH-elongata_contig11637:1938..3781 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score87.0
Seed ortholog evalue3.4e-15
Seed eggNOG ortholog2880.D7FWL7
Preferred nameSEC61A1
KEGG koko:K10956
KEGG TC3.A.5.4,3.A.5.8,3.A.5.9
KEGG Pathwayko03060,ko04141,ko04145,ko05110,map03060,map04141,map04145,map05110
KEGG ModuleM00401
GOsGO:0000322,GO:0000323,GO:0000324,GO:0001655,GO:0001700,GO:0001822,GO:0002009,GO:0002376,GO:0003674,GO:0005048,GO:0005215,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005783,GO:0005784,GO:0005789,GO:0005791,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006616,GO:0006620,GO:0006807,GO:0006810,GO:0006886,GO:0006950,GO:0006952,GO:0006955,GO:0006996,GO:0007029,GO:0007275,GO:0007391,GO:0007399,GO:0007417,GO:0007420,GO:0008104,GO:0008150,GO:0008152,GO:0008258,GO:0008320,GO:0008565,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009790,GO:0009792,GO:0009888,GO:0009892,GO:0009894,GO:0009895,GO:0009987,GO:0010033,GO:0010243,GO:0010256,GO:0010498,GO:0010506,GO:0010507,GO:0010941,GO:0010942,GO:0010959,GO:0012505,GO:0012506,GO:0015031,GO:0015399,GO:0015405,GO:0015450,GO:0015833,GO:0016020,GO:0016021,GO:0016043,GO:0016331,GO:0017038,GO:0019222,GO:0019538,GO:0019941,GO:0021536,GO:0021538,GO:0021986,GO:0022804,GO:0022857,GO:0022884,GO:0030139,GO:0030163,GO:0030176,GO:0030433,GO:0030659,GO:0030666,GO:0030670,GO:0030867,GO:0030900,GO:0030970,GO:0031090,GO:0031204,GO:0031224,GO:0031227,GO:0031323,GO:0031324,GO:0031329,GO:0031330,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032527,GO:0032879,GO:0032991,GO:0033036,GO:0033218,GO:0033365,GO:0033554,GO:0034097,GO:0034341,GO:0034613,GO:0034756,GO:0034758,GO:0034759,GO:0034761,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0034976,GO:0036503,GO:0039019,GO:0042175,GO:0042221,GO:0042277,GO:0042335,GO:0042886,GO:0042887,GO:0043021,GO:0043022,GO:0043161,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043270,GO:0043632,GO:0043900,GO:0043902,GO:0043903,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044433,GO:0044444,GO:0044446,GO:0044464,GO:0044743,GO:0044877,GO:0045047,GO:0045087,GO:0045169,GO:0045184,GO:0045335,GO:0046596,GO:0046598,GO:0046907,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0048598,GO:0048729,GO:0048731,GO:0048793,GO:0048856,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0051716,GO:0055085,GO:0060322,GO:0060429,GO:0065002,GO:0065007,GO:0070727,GO:0070843,GO:0070972,GO:0071256,GO:0071261,GO:0071702,GO:0071704,GO:0071705,GO:0071806,GO:0071840,GO:0071944,GO:0072001,GO:0072006,GO:0072594,GO:0072599,GO:0072657,GO:0090150,GO:0097708,GO:0098586,GO:0098588,GO:0098796,GO:0098805,GO:0098827,GO:1901564,GO:1901565,GO:1901575,GO:1901698,GO:1903513,GO:1903900,GO:1903902,GO:1904062,GO:1904064,GO:1904680
EggNOG free text desc.protein transport
EggNOG OGsCOG0201@1,KOG1373@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko02044
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionputative Sec61/secY
Ec32 orthologEc-11_002390.1
Exons3
Model size811
Cds size192
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig11637.1287.1prot_H-elongata_contig11637.1287.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig11637 2487..2678 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929676.245011-UTR-H-elongata_contig11637:1937..23131622929676.245011-UTR-H-elongata_contig11637:1937..2313Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11637 1938..2313 -
1691679115.4870903-UTR-H-elongata_contig11637:1937..23131691679115.4870903-UTR-H-elongata_contig11637:1937..2313Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11637 1938..2313 -
1622929676.2612877-UTR-H-elongata_contig11637:2372..24861622929676.2612877-UTR-H-elongata_contig11637:2372..2486Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11637 2373..2486 -
1691679115.507876-UTR-H-elongata_contig11637:2372..24861691679115.507876-UTR-H-elongata_contig11637:2372..2486Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11637 2373..2486 -
1622929676.2910836-UTR-H-elongata_contig11637:3652..37811622929676.2910836-UTR-H-elongata_contig11637:3652..3781Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11637 3653..3781 -
1691679115.5327153-UTR-H-elongata_contig11637:3652..37811691679115.5327153-UTR-H-elongata_contig11637:3652..3781Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig11637 3653..3781 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929676.2759159-CDS-H-elongata_contig11637:2486..26781622929676.2759159-CDS-H-elongata_contig11637:2486..2678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11637 2487..2678 -
1691679115.5228364-CDS-H-elongata_contig11637:2486..26781691679115.5228364-CDS-H-elongata_contig11637:2486..2678Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig11637 2487..2678 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig11637.1287.1

>prot_H-elongata_contig11637.1287.1 ID=prot_H-elongata_contig11637.1287.1|Name=mRNA_H-elongata_contig11637.1287.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=64bp
MRALQEAFYRQNLPNITNLLATALVFIVVIYFQGWRVDLPVRRQLDFVLE
IMYVVYVYVPSRA*
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mRNA from alignment at H-elongata_contig11637:1938..3781-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig11637.1287.1 ID=mRNA_H-elongata_contig11637.1287.1|Name=mRNA_H-elongata_contig11637.1287.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1844bp|location=Sequence derived from alignment at H-elongata_contig11637:1938..3781- (Himanthalia elongata Himel1 dioecious)
GCGACGAACATCTGCGAGACAATAATCTGGAAGGCGTTTTCTCCTACGAC
GATTAACACGGGGAGAGGGACGGAGTTCGAGGGGGCCATCATCGCCCTCT
TTCACCTTATCATCACGAGGCCGGACAAAGTGAGTCCTTGTATATATATA
TATATATATATATATATACCAGCTCTAGTGTACCATATACTGTATGATTT
ATTATTAGCTTTAATAAGGACGGTAGCATAACACTTTTCGGAGGGAAAGA
GAGGGAGAGACGTAAATATATTGACAAAATAGGGACATAGTTGAAGCTAG
AGGCGTGATAAGGAGCGGAGGAGACACTTCAAAGTATTCCGGGGTAATAT
GACGTCACGCGGCATATGCCCGTCTTGCCCGCTGCTGACGTGACGTCCCA
TGGTGATGTTTGGTAGGGGTTTACCTATTTTTAACCCATGGGTTAGAAGT
TAGAACCCTAACCCAAGCACGCATGGGATGGAAACCCCGGGATAGGACAC
CTTACTGCCCCCCCCCCGAGCACCCCATGGGTGGTTGGTGTGGGTTAGGG
GCGGGTTGGGTCAGCCAGTATATAAATGGTTTCGAAGAAATGGCTATTTT
ACTCTGCATGAAATCACCGTTTTTGCACGTTTTTCGAAGTGAAGTCCGGA
GGCCGTGGGTTAGAAGTTAGGACCTAACCCAAGCACGCTTTGGATGGAAA
CCCCGGGGTAGGAAATCTTGCTGCCCCCCTCTCCGGAATTCACTTCGAAA
AAATAGCAAAAAACGTTGATTTGATGCAGAGTAGAATAGCTGTTTCTCTG
AAACCATTTATATACTGGCCTCAGGAGGACAAAATCGTATCCTATCCCGG
AGTTTCTATCCCATGCGTGCTTGGGTTAGGGTTCTAACTTCCAACCCATG
GGTTAAAAATAGGAGCTCCCGTTTGGTAGTATAATAGTGATGATATGTCT
TTTAAAATGATACACTAGGTACTTGTACTTCGTACTAAAATTCTGACACA
AAAGCTCAATCTTATCCTTTCAAAAATAATATCATTATGCCTTTACTTTA
TCAACTATATACATATATCTCTCTCTATATATTTCTTTGCCTCTATATAT
CAGATGCGCGCTCTTCAGGAGGCTTTCTACAGGCAAAACCTTCCCAACAT
CACGAACCTGCTGGCCACCGCCTTGGTATTCATCGTGGTGATTTATTTCC
AGGGCTGGAGAGTCGACCTACCGGTAAGACGACAACTTGATTTTGTTTTG
GAAATAATGTACGTAGTATATGTTTATGTCCCTTCCAGGGCTTGAGCAAT
CTCGGTCGTCTTGCTTTGTCTGGTCTTGAGAACATTAAGATATAGACTTT
AGATATATTCGTTATTTTCGACACCGTTATACAGTACAGTATAGTACTTT
ATATAGTATGTACTTTATACAGTGTATAGTACAGTACTCTTTACAGTATA
ATACTTTATACAGTGTAGTACTTTATATAGTACAGTTCTTTGATGTATTT
AAGTGAAGCAGTGTGTTGAGTGTGTGTATCTTAATCAAATACGGCGTCAG
CCACAGCGGTATAAGCGTTCTATATGGCGCGCTCGTGCTGGTGCTGGTTT
GCTCGCCATAGTTGATTAGCCACGAGTGGCGCGAACTTATCCCCCCCGGG
CAGGTTTTTCGCTTGCCAATGTCACGTTGCCTTTTTCTGGCGTTTCGTTT
TTTCTTTCTTGTTTTTCTTTTTTATGTCGCTTTTCCGAATATTTGTATTG
TGCACCATTATTGTCGTTTCCTTTTTTATTGGAGAGTACCTTGAACGTTT
TTCTCCTTCCCGGATGGTGCATTTTTTCTACTTTTTGACCACGG
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Coding sequence (CDS) from alignment at H-elongata_contig11637:1938..3781-

>mRNA_H-elongata_contig11637.1287.1 ID=mRNA_H-elongata_contig11637.1287.1|Name=mRNA_H-elongata_contig11637.1287.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=384bp|location=Sequence derived from alignment at H-elongata_contig11637:1938..3781- (Himanthalia elongata Himel1 dioecious)
ATGCGCGCTCTTCAGGAGGCTTTCTACAGGCAAAACCTTCCCAACATCAC
GAACCTGCTGGCCACCGCCTTGGTATTCATCGTGGTGATTTATTTCCAGG
GCTGGAGAGTCGACCTACCGGTAAGACGACAACTTGATTTTGTTTTGGAA
ATAATGTACGTAGTATATGTTTATGTCCCTTCCAGGGCTTGAATGCGCGC
TCTTCAGGAGGCTTTCTACAGGCAAAACCTTCCCAACATCACGAACCTGC
TGGCCACCGCCTTGGTATTCATCGTGGTGATTTATTTCCAGGGCTGGAGA
GTCGACCTACCGGTAAGACGACAACTTGATTTTGTTTTGGAAATAATGTA
CGTAGTATATGTTTATGTCCCTTCCAGGGCTTGA
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