mRNA_H-elongata_contig116285.1283.1 (mRNA) Himanthalia elongata Himel1 dioecious
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Overview
Homology
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: D8LEP1_ECTSI (WD-repeat protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEP1_ECTSI) HSP 1 Score: 187 bits (474), Expect = 1.630e-51 Identity = 112/208 (53.85%), Postives = 139/208 (66.83%), Query Frame = 1
Query: 1 KARAELAVRVVEACVRTKRVQAEAGRISSEVAMARSKLDALALDIEEEAAA-ADAEG--------------------------RRTLEGLLAKDAEIPTRAGLAQDEKEAAVTEARRRHALRNSLTRYRGKAVPTILSNRQMMGRRFGS-RIAGSVSLRGMSSRLLGDHMRPIVTANGHGINPVYCIKFDQTGQFIFTGADDHLIKVW 540
+AR A RVVEAC+ + RV+A A ++ S++A +SKL+AL LD EA A A A G RR E LLA++ +P LA+DEK+AA+ EAR+R A+ NSLTRY GKAVPTILSNR+ G RFG RIAG V LRG SSRLL D MRP++TANGHG++PV+CIKFD+TGQ+IFTGADD L+KVW
Sbjct: 176 RARTRCATRVVEACIESVRVRASARKVYSDLATVKSKLEALELDAASEARAIASAAGSATRGRCRAALVPGQESQAELTRLALRRQREELLAREVVLPEEVTLAEDEKDAALAEARQRGAMHNSLTRYAGKAVPTILSNRRAGGARFGGGRIAGRVPLRGASSRLLDDRMRPLITANGHGVHPVFCIKFDRTGQYIFTGADDALVKVW 383
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE) HSP 1 Score: 102 bits (255), Expect = 4.390e-22 Identity = 48/65 (73.85%), Postives = 56/65 (86.15%), Query Frame = 1
Query: 349 GRRFGS-RIAGSVSLRGMSSRLLGDHMRPIVTANGHGINPVYCIKFDQTGQFIFTGADDHLIKVW 540
G RFG RIAG V LRG SSRLL D MRP++TANGHG++PV+CIKFD+TGQ+IFTGADD L+KVW
Sbjct: 4 GTRFGGGRIAGRVPLRGASSRLLDDRMRPLITANGHGVHPVFCIKFDRTGQYIFTGADDALVKVW 68
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: A0A196S8W8_BLAHN (Bromodomain and WD repeat-containing protein n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196S8W8_BLAHN) HSP 1 Score: 59.3 bits (142), Expect = 5.030e-7 Identity = 26/47 (55.32%), Postives = 32/47 (68.09%), Query Frame = 1
Query: 400 SSRLLGDHMRPIVTANGHGINPVYCIKFDQTGQFIFTGADDHLIKVW 540
SS LL RP++T GH +P+Y + D T +F FTGADDHLIKVW
Sbjct: 293 SSSLLLSKYRPLITLAGHSNSPIYGLAIDSTQRFAFTGADDHLIKVW 339
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: A0A482RVX8_9ARCH (Bromo domain-containing protein (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RVX8_9ARCH) HSP 1 Score: 58.2 bits (139), Expect = 1.240e-6 Identity = 20/36 (55.56%), Postives = 29/36 (80.56%), Query Frame = 1
Query: 433 IVTANGHGINPVYCIKFDQTGQFIFTGADDHLIKVW 540
++T +GH +NP YC FD TGQ++ TGADD+L+K+W
Sbjct: 235 LLTVSGHMLNPAYCSVFDSTGQYVLTGADDYLVKIW 270
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: A0A0P5P4W6_9CRUS (Bromodomain and WD repeat-containing protein (Fragment) n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5P4W6_9CRUS) HSP 1 Score: 58.2 bits (139), Expect = 1.250e-6 Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 1
Query: 358 FGSRIAGSVSLRGMSSRLLGDHMRPIVTANGHGINPVYCIKFDQTGQFIFTGADDHLIKVW 540
FG GS RG++ L ++ GH ++ VYC+ FD+TGQ+IFTGADD LIK+W
Sbjct: 82 FGREFTGSFDQRGIAPAKLYSRVQLFCRTLGH-LSAVYCVLFDRTGQYIFTGADDLLIKIW 141
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: A0A162PTZ1_9CRUS (Putative Bromodomain and WD repeat-containing protein n=3 Tax=Daphnia magna TaxID=35525 RepID=A0A162PTZ1_9CRUS) HSP 1 Score: 58.2 bits (139), Expect = 1.270e-6 Identity = 28/61 (45.90%), Postives = 38/61 (62.30%), Query Frame = 1
Query: 358 FGSRIAGSVSLRGMSSRLLGDHMRPIVTANGHGINPVYCIKFDQTGQFIFTGADDHLIKVW 540
FG GS RG++ L ++ GH ++ VYC+ FD+TGQ+IFTGADD LIK+W
Sbjct: 155 FGREFTGSFDQRGIAPAKLYSRVQLFCRTLGH-LSAVYCVLFDRTGQYIFTGADDLLIKIW 214
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: A0A7S4N995_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N995_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 3.390e-6 Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 1
Query: 349 GRRFGSRIAGSVSLRGMSSRLLGDHMRPIVTANGHGINPVYCIKFDQTGQFIFTGADDHLIKVW 540
G R R+ G SL +LL + VTA+ H PVYC++FD+TG++ TGADDHL K++
Sbjct: 263 GHRCPGRLPGPASLVLPRKQLLSQRLSHSVTASCHLFYPVYCLRFDRTGRYFVTGADDHLAKLF 326
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: A0A7S4JSM7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4JSM7_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 3.700e-6 Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 1
Query: 349 GRRFGSRIAGSVSLRGMSSRLLGDHMRPIVTANGHGINPVYCIKFDQTGQFIFTGADDHLIKVW 540
G R R+ G SL +LL + VTA+ H PVYC++FD+TG++ TGADDHL K++
Sbjct: 429 GHRCPGRLPGPASLVLPRKQLLSQRLSHSVTASCHLFYPVYCLRFDRTGRYFVTGADDHLAKLF 492
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: T1FRU6_HELRO (Uncharacterized protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1FRU6_HELRO) HSP 1 Score: 56.2 bits (134), Expect = 5.810e-6 Identity = 32/82 (39.02%), Postives = 46/82 (56.10%), Query Frame = 1
Query: 307 GKAVPTILSNRQMMGRRFGSRIAGSVSLRGMSSRLLGDHMRPIVTAN----GHGINPVYCIKFDQTGQFIFTGADDHLIKVW 540
G +P +LS+R+ MG +R L+ HM +T GH ++ VYC+ FD+TG +IFTG+DDHL+KVW
Sbjct: 105 GPPLPVLLSSRETMG-----------CIR--MDLLMSSHMYNQMTLQFRLLGH-LSSVYCVLFDRTGHYIFTGSDDHLVKVW 172
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Match: UPI001EE61CA4 (bromodomain and WD repeat-containing protein 3-like n=1 Tax=Haliotis rubra TaxID=36100 RepID=UPI001EE61CA4) HSP 1 Score: 55.8 bits (133), Expect = 7.290e-6 Identity = 21/31 (67.74%), Postives = 28/31 (90.32%), Query Frame = 1
Query: 448 GHGINPVYCIKFDQTGQFIFTGADDHLIKVW 540
GH ++ VYC+ FD+TGQ+IFTGADDHL+K+W
Sbjct: 183 GH-LSAVYCVSFDRTGQYIFTGADDHLVKIW 212 The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116285.1283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-elongata_contig116285.1283.1 >prot_H-elongata_contig116285.1283.1 ID=prot_H-elongata_contig116285.1283.1|Name=mRNA_H-elongata_contig116285.1283.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=180bp KARAELAVRVVEACVRTKRVQAEAGRISSEVAMARSKLDALALDIEEEAAback to top mRNA from alignment at H-elongata_contig116285:391..1809+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-elongata_contig116285.1283.1 ID=mRNA_H-elongata_contig116285.1283.1|Name=mRNA_H-elongata_contig116285.1283.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=1419bp|location=Sequence derived from alignment at H-elongata_contig116285:391..1809+ (Himanthalia elongata Himel1 dioecious)back to top Coding sequence (CDS) from alignment at H-elongata_contig116285:391..1809+ >mRNA_H-elongata_contig116285.1283.1 ID=mRNA_H-elongata_contig116285.1283.1|Name=mRNA_H-elongata_contig116285.1283.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=1080bp|location=Sequence derived from alignment at H-elongata_contig116285:391..1809+ (Himanthalia elongata Himel1 dioecious)back to top |