mRNA_H-elongata_contig116280.1282.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116280.1282.1
Unique NamemRNA_H-elongata_contig116280.1282.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig116280.1282.1 vs. uniprot
Match: D7FTV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTV7_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.160e-29
Identity = 54/63 (85.71%), Postives = 59/63 (93.65%), Query Frame = 1 
Query:    1 FQETLNRGLKHLPMEHDISVEAFHPEAVSEANPLDHRFTRSPFPTLHLCYHGLRPRSTPLHPK 189
            FQETLNRGLKHLPMEHDISVEAFHPEAVS+A+PLDHRFTRSPFPTLH+CYHGLR   T L+P+
Sbjct:  677 FQETLNRGLKHLPMEHDISVEAFHPEAVSDASPLDHRFTRSPFPTLHVCYHGLREEGTALNPR 739
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BLAST of mRNA_H-elongata_contig116280.1282.1 vs. uniprot
Match: A0A6H5KW26_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW26_9PHAE)

HSP 1 Score: 114 bits (284), Expect = 1.040e-28
Identity = 51/61 (83.61%), Postives = 58/61 (95.08%), Query Frame = 1 
Query:    7 ETLNRGLKHLPMEHDISVEAFHPEAVSEANPLDHRFTRSPFPTLHLCYHGLRPRSTPLHPK 189
            ETLNRGLKHLPMEHDISVEAFHPEAVS+A+PLDHRFTRSP+PTLH+CYHGLR + T L+P+
Sbjct:  249 ETLNRGLKHLPMEHDISVEAFHPEAVSDASPLDHRFTRSPYPTLHVCYHGLREKGTALNPR 309
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116280.1282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTV7_ECTSI1.160e-2985.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KW26_9PHAE1.040e-2883.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116280contigH-elongata_contig116280:1264..1461 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_002670.1
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.8177888-CDS-H-elongata_contig116280:1263..14611622929675.8177888-CDS-H-elongata_contig116280:1263..1461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116280 1264..1461 -
1691679115.395337-CDS-H-elongata_contig116280:1263..14611691679115.395337-CDS-H-elongata_contig116280:1263..1461Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116280 1264..1461 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116280.1282.1prot_H-elongata_contig116280.1282.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116280 1264..1461 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116280.1282.1

>prot_H-elongata_contig116280.1282.1 ID=prot_H-elongata_contig116280.1282.1|Name=mRNA_H-elongata_contig116280.1282.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=66bp
FQETLNRGLKHLPMEHDISVEAFHPEAVSEANPLDHRFTRSPFPTLHLCY
HGLRPRSTPLHPKPRA
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mRNA from alignment at H-elongata_contig116280:1264..1461-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116280.1282.1 ID=mRNA_H-elongata_contig116280.1282.1|Name=mRNA_H-elongata_contig116280.1282.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=198bp|location=Sequence derived from alignment at H-elongata_contig116280:1264..1461- (Himanthalia elongata Himel1 dioecious)
TTCCAGGAAACCCTGAACCGCGGCCTGAAGCACCTGCCAATGGAGCACGA
CATATCTGTCGAGGCGTTCCATCCGGAGGCGGTTAGCGAGGCGAACCCGC
TGGACCATCGTTTCACTCGCTCCCCGTTCCCCACTCTCCATCTGTGCTAC
CACGGGCTTCGTCCGAGAAGCACTCCGCTCCACCCCAAGCCGCGGGCG
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Coding sequence (CDS) from alignment at H-elongata_contig116280:1264..1461-

>mRNA_H-elongata_contig116280.1282.1 ID=mRNA_H-elongata_contig116280.1282.1|Name=mRNA_H-elongata_contig116280.1282.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=396bp|location=Sequence derived from alignment at H-elongata_contig116280:1264..1461- (Himanthalia elongata Himel1 dioecious)
TTCCAGGAAACCCTGAACCGCGGCCTGAAGCACCTGCCAATGGAGCACGA
CATATCTGTCGAGGCGTTCCATCCGGAGGCGGTTAGCGAGGCGAACCCGC
TGGACCATCGTTTCACTCGCTCCCCGTTCCCCACTCTCCATCTGTGCTAC
CACGGGCTTCGTCCGAGAAGCACTCCGCTCCACCCCAAGCCGCGGGCGTT
CCAGGAAACCCTGAACCGCGGCCTGAAGCACCTGCCAATGGAGCACGACA
TATCTGTCGAGGCGTTCCATCCGGAGGCGGTTAGCGAGGCGAACCCGCTG
GACCATCGTTTCACTCGCTCCCCGTTCCCCACTCTCCATCTGTGCTACCA
CGGGCTTCGTCCGAGAAGCACTCCGCTCCACCCCAAGCCGCGGGCG
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