mRNA_H-elongata_contig116217.1279.1 (mRNA) Himanthalia elongata Himel1 dioecious

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-elongata_contig116217.1279.1
Unique NamemRNA_H-elongata_contig116217.1279.1
TypemRNA
OrganismHimanthalia elongata Himel1 dioecious (Himanthalia elongata Himel1 dioecious)
Homology
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BLAST of mRNA_H-elongata_contig116217.1279.1 vs. uniprot
Match: D7FXP8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXP8_ECTSI)

HSP 1 Score: 75.9 bits (185), Expect = 6.140e-14
Identity = 36/47 (76.60%), Postives = 41/47 (87.23%), Query Frame = 1 
Query:    4 NEIRFGRHLASSDKHVRDRTVSALREWLYHRSKGGALTDLDLLKARR 144
            NE++FG+HLASSDK VRDRTV ALREWL  RS+GG+LTDLDLLK  R
Sbjct:   33 NEVKFGKHLASSDKRVRDRTVGALREWLRQRSRGGSLTDLDLLKIWR 79
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BLAST of mRNA_H-elongata_contig116217.1279.1 vs. uniprot
Match: A0A836CJU2_9STRA (Nucleolar protein,Nop52-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJU2_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 6.860e-5
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 3 
Query:  207 IHTGQIWRGLWYCMFMCDKAPVQRELAQNL 296
            +   +IW+GLWYCM+MCDKA VQ+ELA  L
Sbjct:   94 LDLAKIWKGLWYCMWMCDKAEVQQELAVTL 123
The following BLAST results are available for this feature:
BLAST of mRNA_H-elongata_contig116217.1279.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FXP8_ECTSI6.140e-1476.60Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CJU2_9STRA6.860e-563.33Nucleolar protein,Nop52-domain-containing protein ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-elongata_contig116217contigH-elongata_contig116217:1038..1817 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Himanthalia elongata Himel1 dioecious2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue9.2e-12
Seed eggNOG ortholog2880.D7FXP8
Preferred nameRRP1B
KEGG koko:K14849
GOsGO:0000785,GO:0000791,GO:0000792,GO:0001652,GO:0003674,GO:0003712,GO:0003713,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005730,GO:0006139,GO:0006355,GO:0006357,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009605,GO:0009607,GO:0009615,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010628,GO:0010921,GO:0010923,GO:0010941,GO:0010942,GO:0016070,GO:0016072,GO:0019219,GO:0019220,GO:0019222,GO:0022613,GO:0030684,GO:0030687,GO:0030688,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032991,GO:0034260,GO:0034470,GO:0034641,GO:0034660,GO:0035303,GO:0035305,GO:0035821,GO:0042254,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043087,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043484,GO:0043900,GO:0043902,GO:0043903,GO:0043921,GO:0043923,GO:0044085,GO:0044092,GO:0044237,GO:0044238,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044452,GO:0044464,GO:0045893,GO:0045935,GO:0045936,GO:0045944,GO:0046483,GO:0046782,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048524,GO:0050434,GO:0050789,GO:0050790,GO:0050792,GO:0050794,GO:0050896,GO:0051171,GO:0051173,GO:0051174,GO:0051252,GO:0051254,GO:0051336,GO:0051346,GO:0051702,GO:0051704,GO:0051707,GO:0051817,GO:0051851,GO:0052312,GO:0052472,GO:0060255,GO:0065007,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0098586,GO:0140110,GO:1901360,GO:1902680,GO:1903506,GO:1903508,GO:1990904,GO:2000112,GO:2001141
EggNOG free text desc.rRNA processing
EggNOG OGsKOG3911@1,KOG3911@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size298
Cds size297
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-elongata_contig116217.1279.1prot_H-elongata_contig116217.1279.1Himanthalia elongata Himel1 dioeciouspolypeptideH-elongata_contig116217 1038..1816 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.5091147-CDS-H-elongata_contig116217:1037..11721622929675.5091147-CDS-H-elongata_contig116217:1037..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116217 1038..1172 +
1691679115.274106-CDS-H-elongata_contig116217:1037..11721691679115.274106-CDS-H-elongata_contig116217:1037..1172Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116217 1038..1172 +
1622929675.5263555-CDS-H-elongata_contig116217:1654..18161622929675.5263555-CDS-H-elongata_contig116217:1654..1816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116217 1655..1816 +
1691679115.284179-CDS-H-elongata_contig116217:1654..18161691679115.284179-CDS-H-elongata_contig116217:1654..1816Himanthalia elongata Himel1 dioeciousCDSH-elongata_contig116217 1655..1816 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929675.5460207-UTR-H-elongata_contig116217:1816..18171622929675.5460207-UTR-H-elongata_contig116217:1816..1817Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116217 1817..1817 +
1691679115.2924392-UTR-H-elongata_contig116217:1816..18171691679115.2924392-UTR-H-elongata_contig116217:1816..1817Himanthalia elongata Himel1 dioeciousUTRH-elongata_contig116217 1817..1817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-elongata_contig116217.1279.1

>prot_H-elongata_contig116217.1279.1 ID=prot_H-elongata_contig116217.1279.1|Name=mRNA_H-elongata_contig116217.1279.1|organism=Himanthalia elongata Himel1 dioecious|type=polypeptide|length=99bp
KNEIRFGRHLASSDKHVRDRTVSALREWLYHRSKGGALTDLDLLKARRAS
ESPGSGVLTVDGVSPPIIASTRGRSGAVCGIACSCATRPPSRGSSPKT*
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mRNA from alignment at H-elongata_contig116217:1038..1817+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-elongata_contig116217.1279.1 ID=mRNA_H-elongata_contig116217.1279.1|Name=mRNA_H-elongata_contig116217.1279.1|organism=Himanthalia elongata Himel1 dioecious|type=mRNA|length=780bp|location=Sequence derived from alignment at H-elongata_contig116217:1038..1817+ (Himanthalia elongata Himel1 dioecious)
AAGAACGAGATCCGCTTCGGGCGGCATCTTGCCTCGAGCGACAAGCATGT
TCGGGACCGAACGGTTTCGGCGCTGAGAGAGTGGCTTTACCACCGGAGCA
AAGGGGGCGCCCTCACCGATCTTGATCTGCTGAAGGTGAAAGGGGGGGGG
TATCGTTGTGTAGGTGACGCTTGAAATCGGACTCCAGGGGATGGTTGATG
AATATACCTTGTCAACTCTCCTGGCGGCAACACGTTGCTTGCAGGCACCC
CATCCCTAAATGTAGACTCTTCGGACTAAAAATGATGACGATTTTGGCGA
TACCTAACTATATTTCGGTCGGGCAAGGCAGCACCATGTTGGTCGGGAAC
CAGTTTTATCGGTGTCATCTTTCGAAATATCGGGAATCGACAAGCCACTG
TGTGTGATCCATTCCACGAGAATGGAAGCCACGATCTTGCTCTTGCTGTC
ATGCCGGGGATGCCCCGTGTTTGTTCGGCATGGAGGGGATCGGGGTGATG
TCTTGAGTCGTAAGTTATGTTATCCGAGTGTGGTGGCTAGTTTGTAATCC
TTTTAGCGATGGCGATCGTGTCGGGTTGGTATTGTATTGTATTGCTTTGC
GTTTCCCTTTTGTGTAGGCCAGGCGAGCGAGCGAATCACCGGGTTCTGGT
GTTCTCACCGTGGACGGCGTTTCCCCTCCCATTATTGCATCCACACGGGG
CAGATCTGGCGCGGTCTGTGGTATTGCATGTTCATGTGCGACAAGGCCCC
CGTCCAGAGGGAGCTCGCCCAAAACCTGAC
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Coding sequence (CDS) from alignment at H-elongata_contig116217:1038..1817+

>mRNA_H-elongata_contig116217.1279.1 ID=mRNA_H-elongata_contig116217.1279.1|Name=mRNA_H-elongata_contig116217.1279.1|organism=Himanthalia elongata Himel1 dioecious|type=CDS|length=594bp|location=Sequence derived from alignment at H-elongata_contig116217:1038..1817+ (Himanthalia elongata Himel1 dioecious)
AAGAACGAGATCCGCTTCGGGCGGCATCTTGCCTCGAGCGACAAGCATGT
TCGGGACCGAACGGTTTCGGCGCTGAGAGAGTGGCTTTACCACCGGAGCA
AAGGGGGCGCCCTCACCGATCTTGATCTGCTGAAGAAGAACGAGATCCGC
TTCGGGCGGCATCTTGCCTCGAGCGACAAGCATGTTCGGGACCGAACGGT
TTCGGCGCTGAGAGAGTGGCTTTACCACCGGAGCAAAGGGGGCGCCCTCA
CCGATCTTGATCTGCTGAAGGCCAGGCGAGCGAGCGAATCACCGGGTTCT
GGTGTTCTCACCGTGGACGGCGTTTCCCCTCCCATTATTGCATCCACACG
GGGCAGATCTGGCGCGGTCTGTGGTATTGCATGTTCATGTGCGACAAGGC
CCCCGTCCAGAGGGAGCTCGCCCAAAACCTGAGCCAGGCGAGCGAGCGAA
TCACCGGGTTCTGGTGTTCTCACCGTGGACGGCGTTTCCCCTCCCATTAT
TGCATCCACACGGGGCAGATCTGGCGCGGTCTGTGGTATTGCATGTTCAT
GTGCGACAAGGCCCCCGTCCAGAGGGAGCTCGCCCAAAACCTGA
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